Properties
| Property Name | Value |
|---|
| TranscriptId | 552153 |
| Track | FilteredModels2 |
| ProteinId | 552067 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:132792..135922 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2355 ID=mRNA_2355|Name=jgi.p|Nanoce1779_2|552067|organism=Nannochloropsis oceanica|type=mRNA|length=2847bp
CAGCTGCTAAATTTGGAAGCCAGGAATATTCGTGCTTCTTCCTGCTGGTA
CCATCCAGCGCACGCCGCAGTGTAGCTAATCAGGTCTTTAAAGTGGGAAA
TGCGATGTGCGTGTTTTGCGACACCACACTCTCAGGTCACCCACCCATTC
AATGGCCAGGAGACGAGACGGGAGCCAGAAGCATAAGCAGTTTCCCCGCC
CCCGGGTGCGTGCTCGTCGCCCACCCCTTTTCACACCTGCCTTGTGGAGC
CTTTCCCGACCTACAGCTTACGATATGATACTGCATCCGCTGGGATGAGT
AGAAGTTACAACAAAAGCAATGTCGTAGACAAGCTTGCATGCATCCTGCA
ACGTGGCTTGTTTGCCCATTAGTGCTGGGAGGCTCGAACTCCTTCCACTG
GCCAGCCACGACTTGCTGCTTGTGTGCGACATCCTTCTGCTTTCCAATGC
GCTGACTCCACTCTCCTCCTTTCCTTCTCATGCGAAGAACACAGAAATCA
CCAACAACATATATTCCAATACTCTACAGGCAATGGCACCCCTCGGTCCG
TTTGACCCCTTGCCGGAGCGCGGGCACCAGCAACACCACCAACCTCAAGT
CACCGCTGCGCACGTGGCCGAGGAGGAGGCCCTAACGAGCAGCAGACCAA
TTACTACCACCGCACACAAGAATGGAAGAGCACAAGGCGCTTTGGTCATC
GTCGACCCCATTTCCAGTGGGGCAATTCTGGCCTTACTGGGCCAGAAACG
CGATTACCGTTTGATCGCAGTGTACAGCGAGGGGTTAGAAGCCGAGCTCA
AGGCCTTGGTCCCAGCCGAGTGCAACAAAGCAGGGTTGCATTTTGACCAC
GTAGTCGAGCACACTGGTAACATCCCTGCCACAGCCGCCAAGATACGGGC
CCTCTTTTCCTCTTCCCCCTCCTACCCCTCCCTCCCTCCCCCTCTCGTCC
TCAAGTCCCTCCTTGTCGGCTGCGAATCTGGTGTTGCCCTCTATGATGCG
TTGATTGAAGAACTCCTTCTCTCATCCAGGGATGGAGGGTGGGAGGGAGG
GAGTACTCCCTCCATCCCTGCCGCTGCCTTGAAGGGAAACGTACCGTCCC
TCTCCCTGGCCCGTCGTAACAAGTACCTGATGGGCGAGGCCATCCGTTCC
GCCGGTCTCCGTGCGGTCAAACAAATTCAGACGTCCGATTGGACGGATAT
CCCTCCTTTCCTCGACACTTGCCGCAAGCCTTCCCTCCATCCCTCCCTTC
CTCCCTCCCTCAAGGTGGTGCTCAAGCCCCTGTCGTCCGCGGGTTCGGAT
GGTGTTTTTTTTGCGTCTTCAGAACAGGAGGTAAGGGAAGCTTTCGACAC
TATTTTATCGTCTAAAAATGTATTTGGGGAGAAGAATACAAGTGTGCTGG
TACAGGAGTACCTGCGCGGGACGGAGTTCGTAGTGGACTCCATTTCTCAC
GAGGGGGTCCATCGCGTAACGGCTTTGTGGCGTTACGACAAACGGCCCTT
GAACGGCGCGGCATTTGTTTACTACGGTTTACGTCTGTTTGAGAGTGAGG
GCGGGGGGGAGGGAGGGAGGGGTGGGGGGAGGGAGGTGGAGTGGGCCTTG
GCGAGGTATGCTCACAGGTGCTTGGATGCCTTGGGGATTAAAAATGGGTT
TAGTCATGCGGAGGTGATGTGGGTGGAGGGGGAGGGAGGGATGGGAGGGG
AGCCTTGTTTGGTGGAGGTGGGTGCTCGGCCGCATGGAGGGGAAGGGACG
TTTGTGTCGTTAACAGAGGCGGCCATAGGCTATAACCAGCTGTCGGTCGC
GCTGGACCTGATTGAGGATCCGCATGCCCTCACCCTCCTTCCCATCCTCC
CCCCGCGGCTCAAGGCACACGCGGCGGAGGTGTGTTTGGTTTCACGGCAG
GCCGGGCGGTTAGTGAGGCATTTTTTGGAGGAGAGGGTAAATACGGACGT
GCTGCCCGTGGCTCTTCACGTCAACGTCGGCGACTGTCTCAAAAAGACAG
TGGACATGCTCTCTTCTCCTGGCTCGGCGATTTTATGCCATCCTGACCCG
ACGGTCCTCGAGGAGGATTACGAGATGCTTCATGCGATGGACAACTTGTT
TTTGGTTGAGAAAGAGGGCGAAGGAGGGGGAGAGGAGGGGACGACGACGA
CGGAGGAAGGGGGGAGTAGCGATTGTGGAGCGAGCTTGGAGGGGGAGGAG
GAGGAGGAGGAAGAGGGGGAGGAGGAGGAAGCGGTGCAGGCGCTGAAGGA
TGGGGAAAGATGAGGAGGGGAGGGTGGGAGGGAGGGAGAGAATGAGAGTG
TTTGGCAGTCAGTATAGTTTCTTTATCGGCTTGTGTCTATCAACGAGAGA
AAGGGAAAGAATAAGGAGGGATGAGAAATTAGAGAATGCGAACGAGAGGG
CGACGGGCGTGGTCAAGGCCAAGGCAAGCTCTTGTAAGGTGATTGAAATA
ATAATTAGGGGGCGGTAGAAGCAAGAAGATGAAGGGTGATTGCGCTTGGT
GTAAGTGCGCTTGATGGAATGATTTGTGGTTGTCTGAGTAGATTGTGAAG
TAGGGCGAGTGGAAAGGGGGAGGAAATGAGTCAGTGGCAGAAGGCGAAAG
GGAAAGATAGAAGACTGAAGACGTCGGAGTAGCTGCAGAGGGGGTGACAA
TACCAGCAGCAATACAAATGGCGGGAAAGAGGACGCAGTCTCATTTTCAA
CAATCAGGCCGCACATGAGTGAGTGGCAGAAGACAAAAAGGAGGAAAGAA
GGCTGCACACACATACACACACACACACACACATATATATACATACATAC
ATACATGTACACCCATTGGGGATAAGGAAAGTGAAGGAGGAAGCGAG back to topprotein sequence of jgi.p|Nanoce1779_2|552067 >mRNA_2355-protein ID=mRNA_2355-protein|Name=jgi.p|Nanoce1779_2|552067|organism=Nannochloropsis oceanica|type=polypeptide|length=577bp
MAPLGPFDPLPERGHQQHHQPQVTAAHVAEEEALTSSRPITTTAHKNGRA
QGALVIVDPISSGAILALLGQKRDYRLIAVYSEGLEAELKALVPAECNKA
GLHFDHVVEHTGNIPATAAKIRALFSSSPSYPSLPPPLVLKSLLVGCESG
VALYDALIEELLLSSRDGGWEGGSTPSIPAAALKGNVPSLSLARRNKYLM
GEAIRSAGLRAVKQIQTSDWTDIPPFLDTCRKPSLHPSLPPSLKVVLKPL
SSAGSDGVFFASSEQEVREAFDTILSSKNVFGEKNTSVLVQEYLRGTEFV
VDSISHEGVHRVTALWRYDKRPLNGAAFVYYGLRLFESEGGGEGGRGGGR
EVEWALARYAHRCLDALGIKNGFSHAEVMWVEGEGGMGGEPCLVEVGARP
HGGEGTFVSLTEAAIGYNQLSVALDLIEDPHALTLLPILPPRLKAHAAEV
CLVSRQAGRLVRHFLEERVNTDVLPVALHVNVGDCLKKTVDMLSSPGSAI
LCHPDPTVLEEDYEMLHAMDNLFLVEKEGEGGGEEGTTTTEEGGSSDCGA
SLEGEEEEEEEGEEEEAVQALKDGER* back to topmRNA from alignment at scaffold_5:132792..135922- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2355 ID=mRNA_2355|Name=jgi.p|Nanoce1779_2|552067|organism=Nannochloropsis oceanica|type=mRNA|length=3131bp|location=Sequence derived from alignment at scaffold_5:132792..135922- (Nannochloropsis oceanica)
CAGCTGCTAAATTTGGAAGCCAGGAATATTCGTGCTTCTTCCTGCTGGTA
CCATCCAGCGCACGCCGCAGTGTAGCTAATCAGGTCTTTAAAGTGGGAAA
TGCGATGTGCGTGTTTTGCGACACCACACTCTCAGGTCACCCACCCATTC
AATGGCCAGGAGACGAGACGGGAGCCAGAAGCATAAGCAGTTTCCCCGCC
CCCGGGTGCGTGCTCGTCGCCCACCCCTTTTCACACCTGCCTTGTGGAGC
CTTTCCCGACCTACAGCTTACGATATGATACTGCATCCGCTGGGATGAGT
AGAAGTTACAACAAAAGCAATGTCGTAGACAAGCTTGCATGCATCCTGCA
ACGTGGCTTGTTTGCCCATTAGTGCTGGGAGGCTCGAACTCCTTCCACTG
GCCAGCCACGACTTGCTGCTTGTGTGCGACATCCTTCTGCTTTCCAATGC
GCTGACTCCACTCTCCTCCTTTCCTTCTCATGCGAAGAACACAGAAATCA
CCAACAACATATATTCCAATACTCTACAGGCAATGGCACCCCTCGGTCCG
TTTGACCCCTTGCCGGAGCGCGGGCACCAGCAACACCACCAACCTCAAGT
CACCGCTGCGCACGTGGCCGAGGAGGAGGCCCTAACGAGCAGCAGACCAA
TTACTACCACCGCACACAAGAATGGAAGAGCACAAGGCGCTTTGGTCATC
GTCGACCCCATTTCCAGTGGGGCAATTCTGGCCTTACTGGGCCAGAAACG
CGATTACCGTTTGATCGCAGTGTACAGCGAGGGGTTAGAAGCCGAGCTCA
AGGCCTTGGTCCCAGCCGAGTGCAACAAAGCAGGGTTGCATTTTGACCAC
GTAGTCGAGCACACTGGTAACATCCCTGCCACAGCCGCCAAGATACGGGC
CCTCTTTTCCTCTTCCCCCTCCTACCCCTCCCTCCCTCCCCCTCTCGTCC
TCAAGTCCCTCCTTGTCGGCTGCGAATCTGGTGTTGCCCTCTATGATGCG
TTGATTGAAGAACTCCTTCTCTCATCCAGGGATGGAGGGTGGGAGGGAGG
GAGTACTCCCTCCATCCCTGCCGCTGCCTTGAAGGGAAACGTACCGTCCC
TCTCCCTGGCCCGTCGTAACAAGTACCTGATGGGCGAGGCCATCCGTTCC
GCCGGTCTCCGTGCGGTCAAACAAATTCAGACGTCCGATTGGACGGATAT
CCCTCCTTTCCTCGACACTTGCCGCAAGCCTTCCCTCCATCCCTCCCTTC
CTCCCTCCCTCAAGGTGGTGCTCAAGCCCCTGTCGTCCGCGGGTTCGGAT
GGTGTTTTTTTTGCGTCTTCAGAACAGGAGGTAAGGGAAGCTTTCGACAC
TATTTTATCGTCTAAAAATGTATTTGGGGAGAAGAATACAAGTGTGCTGG
TACAGGAGTACCTGCGCGGGACGGAGTTCGTAGTGGACTCCATTTCTCAC
GAGGGGGTCCATCGCGTAACGGCTTTGTGGCGTTACGACAAACGGCCCTT
GAACGGCGCGGCATTTGTTTACTACGGTTTACGTCTGTTTGAGAGTGAGG
GCGGGGGGGAGGGAGGGAGGGGTGGGGGGAGGGAGGTGGAGTGGGCCTTG
GCGAGGTATGCTCACAGGTGCTTGGATGCCTTGGGGATTAAAAATGGGTT
TAGTCATGCGGAGGTGATGTGGGTGGAGGGGGAGGGAGGGATGGGAGGGG
AGCCTTGTTTGGTGGAGGTGGGTGCTCGGCCGCATGGAGGGGAAGGGACG
TTTGTGTCGTTAACAGAGGCGGCCATAGGCTATAACCAGCTGTCGGTCGC
GCTGGACCTGATTGAGGATCCGCATGCCCTCACCCTCCTTCCCATCCTCC
CCCCGCGGCTCAAGGCACACGCGGCGGAGGTGTGTTTGGTTTCACGGCAG
GCCGGGCGGTTAGTGAGGCATTTTTTGGAGGAGAGGGTAAATACGGACGT
GCTGCCGTCGCTTAAGGTACGTGTGGGTGTGTTCATGTCAGGGTGGTAGA
TATGTGTTTGTGTGTCAGGGGTGGAAGGTGCTGTCATGTTCTTCCTCCTC
TTCCTTGTTTCCTGACAGTCGCCCGTCTCACAGTCACCCGCGTTGTGTGT
CTGTGGTAAGATACTGATTCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCT
CCCTCTCTCTCTCCGTCCCTCTCTCCCTCCTCCCCTCCCTCTCTCCCTCC
CTCCCTCCCTCCCTCCCTTCCTTCCTTCCTCCTCACAGAGCGTGGCTCTT
CACGTCAACGTCGGCGACTGTCTCAAAAAGACAGTGGACATGCTCTCTTC
TCCTGGCTCGGCGATTTTATGCCATCCTGACCCGACGGTCCTCGAGGAGG
ATTACGAGATGCTTCATGCGATGGACAACTTGTTTTTGGTTGAGAAAGAG
GGCGAAGGAGGGGGAGAGGAGGGGACGACGACGACGGAGGAAGGGGGGAG
TAGCGATTGTGGAGCGAGCTTGGAGGGGGAGGAGGAGGAGGAGGAAGAGG
GGGAGGAGGAGGAAGCGGTGCAGGCGCTGAAGGATGGGGAAAGATGAGGA
GGGGAGGGTGGGAGGGAGGGAGAGAATGAGAGTGTTTGGCAGTCAGTATA
GTTTCTTTATCGGCTTGTGTCTATCAACGAGAGAAAGGGAAAGAATAAGG
AGGGATGAGAAATTAGAGAATGCGAACGAGAGGGCGACGGGCGTGGTCAA
GGCCAAGGCAAGCTCTTGTAAGGTGATTGAAATAATAATTAGGGGGCGGT
AGAAGCAAGAAGATGAAGGGTGATTGCGCTTGGTGTAAGTGCGCTTGATG
GAATGATTTGTGGTTGTCTGAGTAGATTGTGAAGTAGGGCGAGTGGAAAG
GGGGAGGAAATGAGTCAGTGGCAGAAGGCGAAAGGGAAAGATAGAAGACT
GAAGACGTCGGAGTAGCTGCAGAGGGGGTGACAATACCAGCAGCAATACA
AATGGCGGGAAAGAGGACGCAGTCTCATTTTCAACAATCAGGCCGCACAT
GAGTGAGTGGCAGAAGACAAAAAGGAGGAAAGAAGGCTGCACACACATAC
ACACACACACACACACATATATATACATACATACATACATGTACACCCAT
TGGGGATAAGGAAAGTGAAGGAGGAAGCGAG back to topCoding sequence (CDS) from alignment at scaffold_5:132792..135922- >mRNA_2355 ID=mRNA_2355|Name=jgi.p|Nanoce1779_2|552067|organism=Nannochloropsis oceanica|type=CDS|length=3462bp|location=Sequence derived from alignment at scaffold_5:132792..135922- (Nannochloropsis oceanica)
CGTGGCTCTTCACGTCAACGTCGGCGACTGTCTCAAAAAGACAGTGGACA
TGCTCTCTTCTCCTGGCTCGGCGATTTTATGCCATCCTGACCCGACGGTC
CTCGAGGAGGATTACGAGATGCTTCATGCGATGGACAACTTGTTTTTGGT
TGAGAAAGAGGGCGAAGGAGGGGGAGAGGAGGGGACGACGACGACGGAGG
AAGGGGGGAGTAGCGATTGTGGAGCGAGCTTGGAGGGGGAGGAGGAGGAG
GAGGAAGAGGGGGAGGAGGAGGAAGCGGTGCAGGCGCTGAAGGATGGGGA
AAGATGAATGGCACCCCTCGGTCCGTTTGACCCCTTGCCGGAGCGCGGGC
ACCAGCAACACCACCAACCTCAAGTCACCGCTGCGCACGTGGCCGAGGAG
GAGGCCCTAACGAGCAGCAGACCAATTACTACCACCGCACACAAGAATGG
AAGAGCACAAGGCGCTTTGGTCATCGTCGACCCCATTTCCAGTGGGGCAA
TTCTGGCCTTACTGGGCCAGAAACGCGATTACCGTTTGATCGCAGTGTAC
AGCGAGGGGTTAGAAGCCGAGCTCAAGGCCTTGGTCCCAGCCGAGTGCAA
CAAAGCAGGGTTGCATTTTGACCACGTAGTCGAGCACACTGGTAACATCC
CTGCCACAGCCGCCAAGATACGGGCCCTCTTTTCCTCTTCCCCCTCCTAC
CCCTCCCTCCCTCCCCCTCTCGTCCTCAAGTCCCTCCTTGTCGGCTGCGA
ATCTGGTGTTGCCCTCTATGATGCGTTGATTGAAGAACTCCTTCTCTCAT
CCAGGGATGGAGGGTGGGAGGGAGGGAGTACTCCCTCCATCCCTGCCGCT
GCCTTGAAGGGAAACGTACCGTCCCTCTCCCTGGCCCGTCGTAACAAGTA
CCTGATGGGCGAGGCCATCCGTTCCGCCGGTCTCCGTGCGGTCAAACAAA
TTCAGACGTCCGATTGGACGGATATCCCTCCTTTCCTCGACACTTGCCGC
AAGCCTTCCCTCCATCCCTCCCTTCCTCCCTCCCTCAAGGTGGTGCTCAA
GCCCCTGTCGTCCGCGGGTTCGGATGGTGTTTTTTTTGCGTCTTCAGAAC
AGGAGGTAAGGGAAGCTTTCGACACTATTTTATCGTCTAAAAATGTATTT
GGGGAGAAGAATACAAGTGTGCTGGTACAGGAGTACCTGCGCGGGACGGA
GTTCGTAGTGGACTCCATTTCTCACGAGGGGGTCCATCGCGTAACGGCTT
TGTGGCGTTACGACAAACGGCCCTTGAACGGCGCGGCATTTGTTTACTAC
GGTTTACGTCTGTTTGAGAGTGAGGGCGGGGGGGAGGGAGGGAGGGGTGG
GGGGAGGGAGGTGGAGTGGGCCTTGGCGAGGTATGCTCACAGGTGCTTGG
ATGCCTTGGGGATTAAAAATGGGTTTAGTCATGCGGAGGTGATGTGGGTG
GAGGGGGAGGGAGGGATGGGAGGGGAGCCTTGTTTGGTGGAGGTGGGTGC
TCGGCCGCATGGAGGGGAAGGGACGTTTGTGTCGTTAACAGAGGCGGCCA
TAGGCTATAACCAGCTGTCGGTCGCGCTGGACCTGATTGAGGATCCGCAT
GCCCTCACCCTCCTTCCCATCCTCCCCCCGCGGCTCAAGGCACACGCGGC
GGAGGTGTGTTTGGTTTCACGGCAGGCCGGGCGGTTAGTGAGGCATTTTT
TGGAGGAGAGGGTAAATACGGACGTGCTGCCCGTGGCTCTTCACGTCAAC
GTCGGCGACTGTCTCAAAAAGACAGTGGACATGCTCTCTTCTCCTGGCTC
GGCGATTTTATGCCATCCTGACCCGACGGTCCTCGAGGAGGATTACGAGA
TGCTTCATGCGATGGACAACTTGTTTTTGGTTGAGAAAGAGGGCGAAGGA
GGGGGAGAGGAGGGGACGACGACGACGGAGGAAGGGGGGAGTAGCGATTG
TGGAGCGAGCTTGGAGGGGGAGGAGGAGGAGGAGGAAGAGGGGGAGGAGG
AGGAAGCGGTGCAGGCGCTGAAGGATGGGGAAAGATGAATGGCACCCCTC
GGTCCGTTTGACCCCTTGCCGGAGCGCGGGCACCAGCAACACCACCAACC
TCAAGTCACCGCTGCGCACGTGGCCGAGGAGGAGGCCCTAACGAGCAGCA
GACCAATTACTACCACCGCACACAAGAATGGAAGAGCACAAGGCGCTTTG
GTCATCGTCGACCCCATTTCCAGTGGGGCAATTCTGGCCTTACTGGGCCA
GAAACGCGATTACCGTTTGATCGCAGTGTACAGCGAGGGGTTAGAAGCCG
AGCTCAAGGCCTTGGTCCCAGCCGAGTGCAACAAAGCAGGGTTGCATTTT
GACCACGTAGTCGAGCACACTGGTAACATCCCTGCCACAGCCGCCAAGAT
ACGGGCCCTCTTTTCCTCTTCCCCCTCCTACCCCTCCCTCCCTCCCCCTC
TCGTCCTCAAGTCCCTCCTTGTCGGCTGCGAATCTGGTGTTGCCCTCTAT
GATGCGTTGATTGAAGAACTCCTTCTCTCATCCAGGGATGGAGGGTGGGA
GGGAGGGAGTACTCCCTCCATCCCTGCCGCTGCCTTGAAGGGAAACGTAC
CGTCCCTCTCCCTGGCCCGTCGTAACAAGTACCTGATGGGCGAGGCCATC
CGTTCCGCCGGTCTCCGTGCGGTCAAACAAATTCAGACGTCCGATTGGAC
GGATATCCCTCCTTTCCTCGACACTTGCCGCAAGCCTTCCCTCCATCCCT
CCCTTCCTCCCTCCCTCAAGGTGGTGCTCAAGCCCCTGTCGTCCGCGGGT
TCGGATGGTGTTTTTTTTGCGTCTTCAGAACAGGAGGTAAGGGAAGCTTT
CGACACTATTTTATCGTCTAAAAATGTATTTGGGGAGAAGAATACAAGTG
TGCTGGTACAGGAGTACCTGCGCGGGACGGAGTTCGTAGTGGACTCCATT
TCTCACGAGGGGGTCCATCGCGTAACGGCTTTGTGGCGTTACGACAAACG
GCCCTTGAACGGCGCGGCATTTGTTTACTACGGTTTACGTCTGTTTGAGA
GTGAGGGCGGGGGGGAGGGAGGGAGGGGTGGGGGGAGGGAGGTGGAGTGG
GCCTTGGCGAGGTATGCTCACAGGTGCTTGGATGCCTTGGGGATTAAAAA
TGGGTTTAGTCATGCGGAGGTGATGTGGGTGGAGGGGGAGGGAGGGATGG
GAGGGGAGCCTTGTTTGGTGGAGGTGGGTGCTCGGCCGCATGGAGGGGAA
GGGACGTTTGTGTCGTTAACAGAGGCGGCCATAGGCTATAACCAGCTGTC
GGTCGCGCTGGACCTGATTGAGGATCCGCATGCCCTCACCCTCCTTCCCA
TCCTCCCCCCGCGGCTCAAGGCACACGCGGCGGAGGTGTGTTTGGTTTCA
CGGCAGGCCGGGCGGTTAGTGAGGCATTTTTTGGAGGAGAGGGTAAATAC
GGACGTGCTGCC back to top
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