jgi.p|Nanoce1779_2|581007, mRNA_2636 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581007
Unique NamemRNA_2636
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length806
Alignment locationscaffold_5:816787..817951 -

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Properties
Property NameValue
TranscriptId581093
TrackFilteredModels2
ProteinId581007
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:816787..817951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581007gene_2636Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581007mRNA_2636-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2636CDS_2636Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2636 ID=mRNA_2636|Name=jgi.p|Nanoce1779_2|581007|organism=Nannochloropsis oceanica|type=mRNA|length=806bp
GTCAAGAGTAGTATGACAAGAGTTCTCAGTGTGAAAGAGATCTTCAGTGC
TGATTGGCTTCATCTTCGCCGCACGACTACGTCAACGGGGTTGGGGGACT
TGCCGGAATGGGTGATATAGTGGGAAATAAAACGGGGAGCACGTCAATTT
CCGTCCACGTAAATCTACAACCAGGGCAATATAATGTGCCTGCCCAGAAG
GACTTTGCGTTATGGTATTCGTACCTTATCTGGGCTCATCGGTCACCTCA
ACACGGCTTCAACGTCTGGACCACACACAGGCGAACTAACGTGACGATTT
CTCTCGAGAAGGAAGAACTCCTACGGGACGGCCTAGTCGCAGCAGGCAAG
GGGTCGAATGGGGTCGGACCAACTCGCGGGGGCCTTCTTGCTCGCCGTGG
CCGTCATTGTCTTCGTCTACTACACGCTTTGGGTCATAGTATTGCCATTC
ATCGACCCCGACGTAGGCCTTCACGCTTTCTTCCCTCCTCGATTTTACGC
AATCGCTATTCCTACCGTCCTCCTCGTCGTTTTTGTCGGCCTTGTGACTC
TGTTTATTGGCCTAACCATGCTCAGGGCTGCGTCGGCGGAGAAGCGGAAA
AAGAAGCAGCCACAAGCATCTACGGCGTCGGCGAAAAATAAAAGGAAGGT
TACGTAAAGAATGACATGGAATGCGAAGGAAGTTTAAATGTCGTGAAATG
ATGAAGACGCAGAATGAAAGTACATTTTGCCGAAGTAGCGCTTGAATCGA
CGTCAGCAGGCGGTGACAACAGGGCTCAACAAAGAAGTAAATCGTGTACA
TTCCAA
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protein sequence of jgi.p|Nanoce1779_2|581007

>mRNA_2636-protein ID=mRNA_2636-protein|Name=jgi.p|Nanoce1779_2|581007|organism=Nannochloropsis oceanica|type=polypeptide|length=100bp
MGSDQLAGAFLLAVAVIVFVYYTLWVIVLPFIDPDVGLHAFFPPRFYAIA
IPTVLLVVFVGLVTLFIGLTMLRAASAEKRKKKQPQASTASAKNKRKVT*
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mRNA from alignment at scaffold_5:816787..817951-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2636 ID=mRNA_2636|Name=jgi.p|Nanoce1779_2|581007|organism=Nannochloropsis oceanica|type=mRNA|length=1165bp|location=Sequence derived from alignment at scaffold_5:816787..817951- (Nannochloropsis oceanica)
GTCAAGAGTAGTATGACAAGAGTTCTCAGTGTGAAAGAGATCTTCAGTGC
TGATTGGCTTCATCTTCGCCGCACGACTACGTCAACGGGGTTGGGGGACT
TGCCGGAATGGGTGATATAGTGGGAAATAAAACGGGGAGCACGTCAATTT
CCGTCCACGTAAATCTACAACCAGGGCAATATAATGTGCCTGCCCAGAAG
GACTTTGCGTTATGGTATTCGTACCTTATCTGGGCTCATCGGTCACCTCA
ACACGGCTTCAACGTCTGGACCACACACAGGCGAACTAACGTGACGATTT
CTCTCGAGAAGGAAGAACTCCTACGGGACGGCCTAGTCGCAGCAGGCAAG
GGGTCGAATGGGGGTAAGTGACTAAACAAGATTTTTGAGTGTCTCTCCAT
CTGTGCTTCCACTGCCTCCGTCCCTTACCCACTTACACTCACTTACGCAG
TCGGACCAACTCGCGGGGGCCTTCTTGCTCGCCGTGGCCGTCATTGTCTT
CGTCTACTACACGCTTTGGGTCATAGTATTGGTAAGTAGCCATTCGTACG
GTCATATAATCCGTCATGGGTATTCACCGCGGCTGTGTATGTTAAAAGTT
GTGTGTGTGCCTTGCGGCGGAGTAATAGCATGCGCTTATACCGAGTCTTG
ACCTCCCCACCCTCTCGGCCCACCTGTGACCACGATCCCCTCTCACTTGC
TTTCGTGGATGTCGCATCAATGCTAATTCTGGGCTGGTGGACTCGCCAGC
GTGTGTCTTTGTACCTGTAGTGCTCATGTCCTCCTCCTGCCCCCCAAAAC
CAGCCATTCATCGACCCCGACGTAGGCCTTCACGCTTTCTTCCCTCCTCG
ATTTTACGCAATCGCTATTCCTACCGTCCTCCTCGTCGTTTTTGTCGGCC
TTGTGACTCTGTTTATTGGCCTAACCATGCTCAGGGCTGCGTCGGCGGAG
AAGCGGAAAAAGAAGCAGCCACAAGCATCTACGGCGTCGGCGAAAAATAA
AAGGAAGGTTACGTAAAGAATGACATGGAATGCGAAGGAAGTTTAAATGT
CGTGAAATGATGAAGACGCAGAATGAAAGTACATTTTGCCGAAGTAGCGC
TTGAATCGACGTCAGCAGGCGGTGACAACAGGGCTCAACAAAGAAGTAAA
TCGTGTACATTCCAA
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Coding sequence (CDS) from alignment at scaffold_5:816787..817951-

>mRNA_2636 ID=mRNA_2636|Name=jgi.p|Nanoce1779_2|581007|organism=Nannochloropsis oceanica|type=CDS|length=900bp|location=Sequence derived from alignment at scaffold_5:816787..817951- (Nannochloropsis oceanica)
CCATTCATCGACCCCGACGTAGGCCTTCACGCTTTCTTCCCTCCTCGATT
TTACGCAATCGCTATTCCTACCGTCCTCCTCGTCGTTTTTGTCGGCCTTG
TGACTCTGTTTATTGGCCTAACCATGCTCAGGGCTGCGTCGGCGGAGAAG
CGGAAAAAGAAGCAGCCACAAGCATCTACGGCGTCGGCGAAAAATAAAAG
GAAGGTTACGTAATCGGACCAACTCGCGGGGGCCTTCTTGCTCGCCGTGG
CCGTCATTGTCTTCGTCTACTACACGCTTTGGGTCATAGTATTGATGGGG
CCATTCATCGACCCCGACGTAGGCCTTCACGCTTTCTTCCCTCCTCGATT
TTACGCAATCGCTATTCCTACCGTCCTCCTCGTCGTTTTTGTCGGCCTTG
TGACTCTGTTTATTGGCCTAACCATGCTCAGGGCTGCGTCGGCGGAGAAG
CGGAAAAAGAAGCAGCCACAAGCATCTACGGCGTCGGCGAAAAATAAAAG
GAAGGTTACGTAATCGGACCAACTCGCGGGGGCCTTCTTGCTCGCCGTGG
CCGTCATTGTCTTCGTCTACTACACGCTTTGGGTCATAGTATTGATGGGG
CCATTCATCGACCCCGACGTAGGCCTTCACGCTTTCTTCCCTCCTCGATT
TTACGCAATCGCTATTCCTACCGTCCTCCTCGTCGTTTTTGTCGGCCTTG
TGACTCTGTTTATTGGCCTAACCATGCTCAGGGCTGCGTCGGCGGAGAAG
CGGAAAAAGAAGCAGCCACAAGCATCTACGGCGTCGGCGAAAAATAAAAG
GAAGGTTACGTAATCGGACCAACTCGCGGGGGCCTTCTTGCTCGCCGTGG
CCGTCATTGTCTTCGTCTACTACACGCTTTGGGTCATAGTATTGATGGGG
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Synonyms
Publications