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Properties
| Property Name | Value |
|---|
| TranscriptId | 581031 |
| Track | FilteredModels2 |
| ProteinId | 580945 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:776996..780442 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2616 ID=mRNA_2616|Name=jgi.p|Nanoce1779_2|580945|organism=Nannochloropsis oceanica|type=mRNA|length=2774bp
CAGCCACCCACACAAGCAGCATGTCCATGGAAGAGCACACTCTGTCGGAT
TCTGGCAACAGCACCGGCAGCTTGCACGATGTTACGGACAACGATGCCTC
TAATGCAAACGCGGCCATGGCAGCGGCGGCTGCCGAGGAGGAGGAGGGCA
CACAGCACAACAGCAGCCAAAACGTCATTCCCACCGACAGTCTGGCCAAC
GGGCTAAGCGTCGCCAAGGGGCTGTTTACCTCCGGGTGGTCGCAAGCGAA
AAAAGGCCTGACGCAGATGCAGGAATCGGAGACGATGGCGAAAGTCCGTG
AGGCCTCCAAGCCGCTGGTGGGTGCAGTCGTGGAGGGTGGAAAGGTGGTC
GGGGAGAAGCTGCACCAGTCGGCAGAAGCGGCCAAACCTGGACTGGAAGC
AGTTGGGAGGTACGTACATTTTTTGTCTATCGTTAAGTCTTGTCGAACAC
TCAAGATAGATTCGAATCTCACTCTGTCTTCCTTCCTTTTCGCCCGCTAT
CCCTCCCTTCCTGCCTCCATCCCTTCCAGGCGCGTATCGGGCGCGGTGGA
GAGTTTAGCCGAGAAGACTAAGCCGGCATTGGAGAAGGCTGGAGATGCGA
TCAAGACAACGACGAAGCATGTGGTGGATGAGGGCAAGCCGATTGTGAAG
AAGGTGAGTCTAGAGAGAGCGAGGGAGGGAGGACAAGGCCGGGCTATCTG
GGTCGTGGCTAACAATACACCTCCCTTTATACATGTACAGGTGGGAACAT
TCATCAATCACAACATGGGCGGCAAGAGCGAGGGCGGTGGTCGTGGCGAT
CCGCCCACGACGGTCTAAGCGCAGCAGCAGTGCAGGTCTAAGGCGGCAGG
CTTGTAGAGTGGAGGAAAAGAACAGAGGGAAACAGAGATGATTGACGTGA
CAGAAGGGGAGAAGTTTACGTGTCTATCCATAGGATGTGTTATTTGAGAT
CAAGTTTTTTTGGTGTGGGAATGTAGGGAAGGTATGGGAGGGGAGAGAGA
GAGGGATTGTCGACGTGGAGACCGCGTCAAATAAAAGCGGGGGCGAAATC
AAAACACACCGTCTTTATTCATATGGAGTGGAAAGGAACATACACAGGAA
GCGTCTCGTGTTTGTGTTTCCTTTTTTGTGCCCGACAAAGGGCGCTCGAC
CTCCCCCCCCATCTCGTTCTTCTTCCTCTCTCATAAGTGCTGCCGATTAG
ACGTAGCAGGTCCATCTCATTTATGCAGCCACATAAAAGTATGGGATGGA
GACGCCGTTGCACTAGAAACAATCCTTTCGTGATCTCGTAAATTTTCGCA
AAAATAAAATACGTTTACTTTTGCAGAAGGCATGAACGCGTTCACGTCAT
GACGCTCGCAAAGCTCTCACTATTAATGTCCTTCCAGAGAGCAATGCATA
CAGCTCTCGAGCACAGGGACGCCGATCAGCTGTAAAGAAACGGCACTCGC
CATTTCTCGGCGCCTCTTAGTAATCGCCCAGCTTCTGCCCAGAAGGCTGG
GGACTCGGAATCAACGTGATGACGAACTCCTCGGAGGTCATCTCCGTTCA
AACTCTTGCTCACTTATTCATCCACCGGCCTCGCCTATGAATTGTCCAGC
ATGTCAAGCTTGCTTCCGAGACATGCGTGAAATCTATGACACAGGCCTTG
GGGGCTTCGATGGTTCATTTGATCCCTAGAATTCATCAGCGATTTGATCA
GAGCGACGCGATGCCGCAGAAGAAACGCGAATGCTTTCTATATATGGCTT
TGTACCCTTGACGACTTCCCTCCTCAATACACACAGCTAGACTGTTTGGA
TCACGGGTGACGACGACGGTGGCGGTGCGACGACGAGGCAGGCGCATTTT
AGCGGCGGAACAAAACAGAGCGGCTCTTGAAACGTGTACGGGCCCTGCCC
ATCTCCCCTTTGATCCTTCACAACAATGGTGGCGCGGCCCTTGATCGTCA
ACGATGAAGTCAATGTTGGTTCAAGGAGCAGCAACGGCGGCAGCAGTAGT
AGCAGCAGCGGGCGCAGTAGCAGCAGCAGGAGTAGCAACAAACGGAGCAG
CTACGGCAGCAGCACGGTCAGCAGCCCCCACAGCCCCCGGTCATTAGTAC
GCCGCTCCCAGCTACTCTGGATGGTGACCCTAGCTGGGGTCGCCTGGCTC
ATCAAACGCTTACAGCGAAAGACGGGCCCCGCTCTATTCAATCCCCCCTA
CTGTGCTTGGCGTTTCGTTGGGAATCATGACGCATGGAACGTGGCTTTTC
CTGACATGCGCTCGCTATACCATGTGATGCAGATGCAAATGAATGAAGGC
GACGAATTTAAACTTGTTGCCGACTCGTTCCCTTATGCCCGATATGCGTC
CTATCAGACCTATGATTTGAACACACTCATGTCACATCAGAGCTTGCGTG
ATGTTGATATCATCCCCGACGACAACGGCCCCAACTGCTACGCGAACCTA
ACCGCGGCCCAGCTCGGGGAAAAGCAAGGCGGGTACACCATCTACATCAC
CGGACACGGCGACCAAAATTACACCAATGAACTCCGTGCCCTCCCCAATG
GCGTGCGCTCGGGGCAGTTTGACGTGTTTTTCCGGATCTACGTGGAGGAA
GCCCTCCAGGGCCCCCTCCAATCCCCTTGGGGTCATCTGCCCCCTTACGG
GAAAGAGCTGGCATTCGAATGGGGATGGGCCCCACCTCCACGGTTATACA
TCAAACGTGCCCACCTGCACGACGGGAACACGTGGGAAGAGCTCCCCTTC
TGTCAGTACCGTCGGCGAAAAGGC back to topprotein sequence of jgi.p|Nanoce1779_2|580945 >mRNA_2616-protein ID=mRNA_2616-protein|Name=jgi.p|Nanoce1779_2|580945|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MSMEEHTLSDSGNSTGSLHDVTDNDASNANAAMAAAAAEEEEGTQHNSSQ
NVIPTDSLANGLSVAKGLFTSGWSQAKKGLTQMQESETMAKVREASKPLV
GAVVEGGKVVGEKLHQSAEAAKPGLEAVGRYVHFLSIVKSCRTLKIDSNL
TLSSFLFARYPSLPASIPSRRVSGAVESLAEKTKPALEKAGDAIKTTTKH
VVDEGKPIVKKVSLERAREGGQGRAIWVVANNTPPFIHVQVGTFINHNMG
GKSEGGGRGDPPTTV* back to topmRNA from alignment at scaffold_5:776996..780442+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2616 ID=mRNA_2616|Name=jgi.p|Nanoce1779_2|580945|organism=Nannochloropsis oceanica|type=mRNA|length=3447bp|location=Sequence derived from alignment at scaffold_5:776996..780442+ (Nannochloropsis oceanica)
CAGCCACCCACACAAGCAGCATGTCCATGGAAGAGCACACTCTGTCGGAT
TCTGGCAACAGCACCGGCAGCTTGCACGATGTTACGGACAACGATGGTAA
GTTGACGACAACCCGCTTGGCCATGTTCCGTTTAGTTGCCCCTGTCTGTG
CCCTTAAACAGCAAGCACTCAACCTCTCACGCACCATAACCCTCGTTCTT
TCAAATGACATACAGCCTCTAATGCAAACGCGGCCATGGCAGCGGCGGCT
GCCGAGGAGGAGGAGGGCACAGTGAGTCAAGGGCGGAAATGTCGAGGGTG
ACTGGTAGTGCAAATGCCTCGCATGTGTTCATGCTGGTGCAAAGATGTTT
GACAGACATAGGCATTTGGTGATGTAGTATGATATCATGCTACATGCTGC
ATCCACGGCGCCGAATTCACAGCATGGAGGATGCATCGTACCATGCTAAT
TGTTGTAAGATGTGCGAAAGGCCACTCAGTGATCATTTGTGTCAGACAGA
TTCAGTTAGAGTCGAGAAGGCTGTCCGATGACCTCGATTGGAAACAACGA
GAATGAGGAAAGCATGGAATGGCAGTGCCGAATAAGCACCAGTGGCAGCT
TAAGAAGGGGAAAGCACACGCCTCTTTTTAGCGACACGAAAGTGCTTTGG
AAGACAGAACTGCAAGCTTCGAAGGACGGAGCTGTAGCCGATTTTTCGGT
CCCCCCCCCCCCTTTTACATTACCCTCCTTTCTCCCCCGTGGTAATACCC
CGCGAGAAAGGCCACGGTCTCTCCGACAACCTTCCGTCCTAACCCACCTC
TCCCCCTTTCTTTGCATCCCTCCAGCAGCACAACAGCAGCCAAAACGTCA
TTCCCACCGACAGTCTGGCCAACGGGCTAAGCGTCGCCAAGGGGCTGTTT
ACCTCCGGGTGGTCGCAAGCGAAAAAAGGCCTGACGCAGATGCAGGAATC
GGAGACGATGGCGAAAGTCCGTGAGGCCTCCAAGCCGCTGGTGGGTGCAG
TCGTGGAGGGTGGAAAGGTGGTCGGGGAGAAGCTGCACCAGTCGGCAGAA
GCGGCCAAACCTGGACTGGAAGCAGTTGGGAGGTACGTACATTTTTTGTC
TATCGTTAAGTCTTGTCGAACACTCAAGATAGATTCGAATCTCACTCTGT
CTTCCTTCCTTTTCGCCCGCTATCCCTCCCTTCCTGCCTCCATCCCTTCC
AGGCGCGTATCGGGCGCGGTGGAGAGTTTAGCCGAGAAGACTAAGCCGGC
ATTGGAGAAGGCTGGAGATGCGATCAAGACAACGACGAAGCATGTGGTGG
ATGAGGGCAAGCCGATTGTGAAGAAGGTGAGTCTAGAGAGAGCGAGGGAG
GGAGGACAAGGCCGGGCTATCTGGGTCGTGGCTAACAATACACCTCCCTT
TATACATGTACAGGTGGGAACATTCATCAATCACAACATGGGCGGCAAGA
GCGAGGGCGGTGGTCGTGGCGATCCGCCCACGACGGTCTAAGCGCAGCAG
CAGTGCAGGTCTAAGGCGGCAGGCTTGTAGAGTGGAGGAAAAGAACAGAG
GGAAACAGAGATGATTGACGTGACAGAAGGGGAGAAGTTTACGTGTCTAT
CCATAGGATGTGTTATTTGAGATCAAGTTTTTTTGGTGTGGGAATGTAGG
GAAGGTATGGGAGGGGAGAGAGAGAGGGATTGTCGACGTGGAGACCGCGT
CAAATAAAAGCGGGGGCGAAATCAAAACACACCGTCTTTATTCATATGGA
GTGGAAAGGAACATACACAGGAAGCGTCTCGTGTTTGTGTTTCCTTTTTT
GTGCCCGACAAAGGGCGCTCGACCTCCCCCCCCATCTCGTTCTTCTTCCT
CTCTCATAAGTGCTGCCGATTAGACGTAGCAGGTCCATCTCATTTATGCA
GCCACATAAAAGTATGGGATGGAGACGCCGTTGCACTAGAAACAATCCTT
TCGTGATCTCGTAAATTTTCGCAAAAATAAAATACGTTTACTTTTGCAGA
AGGCATGAACGCGTTCACGTCATGACGCTCGCAAAGCTCTCACTATTAAT
GTCCTTCCAGAGAGCAATGCATACAGCTCTCGAGCACAGGGACGCCGATC
AGCTGTAAAGAAACGGCACTCGCCATTTCTCGGCGCCTCTTAGTAATCGC
CCAGCTTCTGCCCAGAAGGCTGGGGACTCGGAATCAACGTGATGACGAAC
TCCTCGGAGGTCATCTCCGTTCAAACTCTTGCTCACTTATTCATCCACCG
GCCTCGCCTATGAATTGTCCAGCATGTCAAGCTTGCTTCCGAGACATGCG
TGAAATCTATGACACAGGCCTTGGGGGCTTCGATGGTTCATTTGATCCCT
AGAATTCATCAGCGATTTGATCAGAGCGACGCGATGCCGCAGAAGAAACG
CGAATGCTTTCTATATATGGCTTTGTACCCTTGACGACTTCCCTCCTCAA
TACACACAGCTAGACTGTTTGGATCACGGGTGACGACGACGGTGGCGGTG
CGACGACGAGGCAGGCGCATTTTAGCGGCGGAACAAAACAGAGCGGCTCT
TGAAACGTGTACGGGCCCTGCCCATCTCCCCTTTGATCCTTCACAACAAT
GGTGGCGCGGCCCTTGATCGTCAACGATGAAGTCAATGTTGGTTCAAGGA
GCAGCAACGGCGGCAGCAGTAGTAGCAGCAGCGGGCGCAGTAGCAGCAGC
AGGAGTAGCAACAAACGGAGCAGCTACGGCAGCAGCACGGTCAGCAGCCC
CCACAGCCCCCGGTCATTAGTACGCCGCTCCCAGCTACTCTGGATGGTGA
CCCTAGCTGGGGTCGCCTGGCTCATCAAACGCTTACAGCGAAAGACGGGC
CCCGCTCTATTCAATCCCCCCTACTGTGCTTGGCGTTTCGTTGGGAATCA
TGACGCATGGAACGTGGCTTTTCCTGACATGCGCTCGCTATACCATGTGA
TGCAGATGCAAATGAATGAAGGCGACGAATTTAAACTTGTTGCCGACTCG
TTCCCTTATGCCCGATATGCGTCCTATCAGACCTATGATTTGAACACACT
CATGTCACATCAGAGCTTGCGTGATGTTGATATCATCCCCGACGACAACG
GCCCCAACTGCTACGCGAACCTAACCGCGGCCCAGCTCGGGGAAAAGCAA
GGCGGGTACACCATCTACATCACCGGACACGGCGACCAAAATTACACCAA
TGAACTCCGTGCCCTCCCCAATGGCGTGCGCTCGGGGCAGTTTGACGTGT
TTTTCCGGATCTACGTGGAGGAAGCCCTCCAGGGCCCCCTCCAATCCCCT
TGGGGTCATCTGCCCCCTTACGGGAAAGAGCTGGCATTCGAATGGGGATG
GGCCCCACCTCCACGGTTATACATCAAACGTGCCCACCTGCACGACGGGA
ACACGTGGGAAGAGCTCCCCTTCTGTCAGTACCGTCGGCGAAAAGGC back to topCoding sequence (CDS) from alignment at scaffold_5:776996..780442+ >mRNA_2616 ID=mRNA_2616|Name=jgi.p|Nanoce1779_2|580945|organism=Nannochloropsis oceanica|type=CDS|length=2394bp|location=Sequence derived from alignment at scaffold_5:776996..780442+ (Nannochloropsis oceanica)
ATGTCCATGGAAGAGCACACTCTGTCGGATTCTGGCAACAGCACCGGCAG
CTTGCACGATGTTACGGACAACGATGCCTCTAATGCAAACGCGGCCATGG
CAGCGGCGGCTGCCGAGGAGGAGGAGGGCACACAGCACAACAGCAGCCAA
AACGTCATTCCCACCGACAGTCTGGCCAACGGGCTAAGCGTCGCCAAGGG
GCTGTTTACCTCCGGGTGGTCGCAAGCGAAAAAAGGCCTGACGCAGATGC
AGGAATCGGAGACGATGGCGAAAGTCCGTGAGGCCTCCAAGCCGCTGGTG
GGTGCAGTCGTGGAGGGTGGAAAGGTGGTCGGGGAGAAGCTGCACCAGTC
GGCAGAAGCGGCCAAACCTGGACTGGAAGCAGTTGGGAGGTACGTACATT
TTTTGTCTATCGTTAAGTCTTGTCGAACACTCAAGATAGATTCGAATCTC
ACTCTGTCTTCCTTCCTTTTCGCCCGCTATCCCTCCCTTCCTGCCTCCAT
CCCTTCCAGGCGCGTATCGGGCGCGGTGGAGAGTTTAGCCGAGAAGACTA
AGCCGGCATTGGAGAAGGCTGGAGATGCGATCAAGACAACGACGAAGCAT
GTGGTGGATGAGGGCAAGCCGATTGTGAAGAAGGTGAGTCTAGAGAGAGC
GAGGGAGGGAGGACAAGGCCGGGCTATCTGGGTCGTGGCTAACAATACAC
CTCCCTTTATACATGTACAGGTGGGAACATTCATCAATCACAACATGGGC
GGCAAGAGCGAGGGCGGTGGTCGTGGCGATCCGCCCACGACGGTCTAAAT
GTCCATGGAAGAGCACACTCTGTCGGATTCTGGCAACAGCACCGGCAGCT
TGCACGATGTTACGGACAACGATGCCTCTAATGCAAACGCGGCCATGGCA
GCGGCGGCTGCCGAGGAGGAGGAGGGCACACAGCACAACAGCAGCCAAAA
CGTCATTCCCACCGACAGTCTGGCCAACGGGCTAAGCGTCGCCAAGGGGC
TGTTTACCTCCGGGTGGTCGCAAGCGAAAAAAGGCCTGACGCAGATGCAG
GAATCGGAGACGATGGCGAAAGTCCGTGAGGCCTCCAAGCCGCTGGTGGG
TGCAGTCGTGGAGGGTGGAAAGGTGGTCGGGGAGAAGCTGCACCAGTCGG
CAGAAGCGGCCAAACCTGGACTGGAAGCAGTTGGGAGGTACGTACATTTT
TTGTCTATCGTTAAGTCTTGTCGAACACTCAAGATAGATTCGAATCTCAC
TCTGTCTTCCTTCCTTTTCGCCCGCTATCCCTCCCTTCCTGCCTCCATCC
CTTCCAGGCGCGTATCGGGCGCGGTGGAGAGTTTAGCCGAGAAGACTAAG
CCGGCATTGGAGAAGGCTGGAGATGCGATCAAGACAACGACGAAGCATGT
GGTGGATGAGGGCAAGCCGATTGTGAAGAAGGTGAGTCTAGAGAGAGCGA
GGGAGGGAGGACAAGGCCGGGCTATCTGGGTCGTGGCTAACAATACACCT
CCCTTTATACATGTACAGGTGGGAACATTCATCAATCACAACATGGGCGG
CAAGAGCGAGGGCGGTGGTCGTGGCGATCCGCCCACGACGGTCTAAATGT
CCATGGAAGAGCACACTCTGTCGGATTCTGGCAACAGCACCGGCAGCTTG
CACGATGTTACGGACAACGATGCCTCTAATGCAAACGCGGCCATGGCAGC
GGCGGCTGCCGAGGAGGAGGAGGGCACACAGCACAACAGCAGCCAAAACG
TCATTCCCACCGACAGTCTGGCCAACGGGCTAAGCGTCGCCAAGGGGCTG
TTTACCTCCGGGTGGTCGCAAGCGAAAAAAGGCCTGACGCAGATGCAGGA
ATCGGAGACGATGGCGAAAGTCCGTGAGGCCTCCAAGCCGCTGGTGGGTG
CAGTCGTGGAGGGTGGAAAGGTGGTCGGGGAGAAGCTGCACCAGTCGGCA
GAAGCGGCCAAACCTGGACTGGAAGCAGTTGGGAGGTACGTACATTTTTT
GTCTATCGTTAAGTCTTGTCGAACACTCAAGATAGATTCGAATCTCACTC
TGTCTTCCTTCCTTTTCGCCCGCTATCCCTCCCTTCCTGCCTCCATCCCT
TCCAGGCGCGTATCGGGCGCGGTGGAGAGTTTAGCCGAGAAGACTAAGCC
GGCATTGGAGAAGGCTGGAGATGCGATCAAGACAACGACGAAGCATGTGG
TGGATGAGGGCAAGCCGATTGTGAAGAAGGTGAGTCTAGAGAGAGCGAGG
GAGGGAGGACAAGGCCGGGCTATCTGGGTCGTGGCTAACAATACACCTCC
CTTTATACATGTACAGGTGGGAACATTCATCAATCACAACATGGGCGGCA
AGAGCGAGGGCGGTGGTCGTGGCGATCCGCCCACGACGGTCTAA back to top
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