jgi.p|Nanoce1779_2|611592, mRNA_10459 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611592
Unique NamemRNA_10459
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length947
Alignment locationscaffold_57:75721..76759 +

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Properties
Property NameValue
TranscriptId611678
TrackFilteredModels2
ProteinId611592
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:75721..76759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611592gene_10459Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611592mRNA_10459-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10459CDS_10459Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10459 ID=mRNA_10459|Name=jgi.p|Nanoce1779_2|611592|organism=Nannochloropsis oceanica|type=mRNA|length=947bp
GACTTTCCAGGCTTAATTCTTCTTTTATACGATCTATCTTCTCATCGCTC
GTCTAATTTCATTCTTTTATTTATGCAATTTATGCCATGCACTTAAATTC
CACTCTTGCAAATTTACACACATAAAGACGCGCACCACAGCCACGTATAC
ACGCACGCACTTTTACATACTCACACGATGATACACAGATTTAATTTCGA
GTCTTGCTATCGGTGTTTTCAATTGGGCCGGTTTTCTTCCTCTGCTGCAT
TTTTCTTCCTCCGATCCTTCACCTCCTACCCTTCCTTCTTCTTCTTCTTC
TTCTTCTTTTTTTGTATTCCCCTCAGTGTCGTTTTTCTTCCCTTCGAACA
AAATCCACGACCGCCGTCACTCTTCGCATCCTCCCTCCCTTTCAACTTCC
TAGAACCGCAGCTGGCAACAAGTATGGTCATCCGGCACAAACTCCACCCT
CTTCCACAACGCCTTCCTACTCCCCTTCCTTCCCTCCTTCCCACCACTCA
AAACCTCCTCCACCTCATTCTTCAACTTCTCCCACGCCTCCTGCTGCTGC
TGCCACAGCTGTTCCTCCTCCCTCCCGGCCTTCCTCCTCCCCATCCCCCT
TCCACCTCGACCTCTCCCGGCCTTCCTCTCTCCCTCCCCCTCTTCCTCAA
CCTGCCTCCAGACCTCCCTCAGAGCCGTTGCCAAGTCACTTCCAAACTCT
TGCCAGTGCACCTGCAGCAGTTCTGGCAGCACCAACACTGCCCTCCCTCC
CTCCCTTGTCACCCTCACGTTTCGCAAAATAAAGGTTCGCGCCTGCTGGC
GGAGGGAGAGAGGGAGGGAGGAAGGACACCGATAGGACGTAATGAAGGGC
GAGGCGTCAGTGCCGTAGGAGAGGGCGAATAAAAGGAGGGGATGAGAGGA
ACGGAGGGCGAGCTGCTTGGGCTTGAGGGGGGAAGGAAGGGAGGGAG
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protein sequence of jgi.p|Nanoce1779_2|611592

>mRNA_10459-protein ID=mRNA_10459-protein|Name=jgi.p|Nanoce1779_2|611592|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MVIRHKLHPLPQRLPTPLPSLLPTTQNLLHLILQLLPRLLLLLPQLFLLP
PGLPPPHPPSTSTSPGLPLSLPLFLNLPPDLPQSRCQVTSKLLPVHLQQF
WQHQHCPPSLPCHPHVSQNKGSRLLAEGEREGGRTPIGRNEGRGVSAVGE
GE*
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mRNA from alignment at scaffold_57:75721..76759+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10459 ID=mRNA_10459|Name=jgi.p|Nanoce1779_2|611592|organism=Nannochloropsis oceanica|type=mRNA|length=1039bp|location=Sequence derived from alignment at scaffold_57:75721..76759+ (Nannochloropsis oceanica)
GACTTTCCAGGCTTAATTCTTCTTTTATACGATCTATCTTCTCATCGCTC
GTCTAATTTCATTCTTTTATTTATGCAATTTATGCCATGCACTTAAATTC
CACTCTTGCAAATTTACACACATAAAGACGCGCACCACAGCCACGTATAC
ACGCACGCACTTTTACATACTCACACGATGATACACAGATTTAATTTCGA
GTCTTGCTATCGGTGTTTTCAATTGGGCCGGTTTTCTTCCTCTGCTGCAT
TTTTCTTCCTCCGATCCTTCACCTCCTACCCTTCCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TTTTTGTATTCCCCTCAGTGTCGTTTTTCTTCCCTTCGAACAAAATCCAC
GACCGCCGTCACTCTTCGCATCCTCCCTCCCTTTCAACTTCCTAGAACCG
CAGCTGGCAACAAGTATGGTCATCCGGCACAAACTCCACCCTCTTCCACA
ACGCCTTCCTACTCCCCTTCCTTCCCTCCTTCCCACCACTCAAAACCTCC
TCCACCTCATTCTTCAACTTCTCCCACGCCTCCTGCTGCTGCTGCCACAG
CTGTTCCTCCTCCCTCCCGGCCTTCCTCCTCCCCATCCCCCTTCCACCTC
GACCTCTCCCGGCCTTCCTCTCTCCCTCCCCCTCTTCCTCAACCTGCCTC
CAGACCTCCCTCAGAGCCGTTGCCAAGTCACTTCCAAACTCTTGCCAGTG
CACCTGCAGCAGTTCTGGCAGCACCAACACTGCCCTCCCTCCCTCCCTTG
TCACCCTCACGTTTCGCAAAATAAAGGTTCGCGCCTGCTGGCGGAGGGAG
AGAGGGAGGGAGGAAGGACACCGATAGGACGTAATGAAGGGCGAGGCGTC
AGTGCCGTAGGAGAGGGCGAATAAAAGGAGGGGATGAGAGGAACGGAGGG
CGAGCTGCTTGGGCTTGAGGGGGGAAGGAAGGGAGGGAG
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Coding sequence (CDS) from alignment at scaffold_57:75721..76759+

>mRNA_10459 ID=mRNA_10459|Name=jgi.p|Nanoce1779_2|611592|organism=Nannochloropsis oceanica|type=CDS|length=459bp|location=Sequence derived from alignment at scaffold_57:75721..76759+ (Nannochloropsis oceanica)
ATGGTCATCCGGCACAAACTCCACCCTCTTCCACAACGCCTTCCTACTCC
CCTTCCTTCCCTCCTTCCCACCACTCAAAACCTCCTCCACCTCATTCTTC
AACTTCTCCCACGCCTCCTGCTGCTGCTGCCACAGCTGTTCCTCCTCCCT
CCCGGCCTTCCTCCTCCCCATCCCCCTTCCACCTCGACCTCTCCCGGCCT
TCCTCTCTCCCTCCCCCTCTTCCTCAACCTGCCTCCAGACCTCCCTCAGA
GCCGTTGCCAAGTCACTTCCAAACTCTTGCCAGTGCACCTGCAGCAGTTC
TGGCAGCACCAACACTGCCCTCCCTCCCTCCCTTGTCACCCTCACGTTTC
GCAAAATAAAGGTTCGCGCCTGCTGGCGGAGGGAGAGAGGGAGGGAGGAA
GGACACCGATAGGACGTAATGAAGGGCGAGGCGTCAGTGCCGTAGGAGAG
GGCGAATAA
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Synonyms
Publications