jgi.p|Nanoce1779_2|356779, mRNA_10783 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|356779
Unique Name	mRNA_10783
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1053
Alignment location	scaffold_59:28823..30385 -

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Properties


Property Name	Value
TranscriptId	356865
Track	FilteredModels2
ProteinId	356779

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_59	supercontig	scaffold_59:28823..30385 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|356779	gene_10783	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|356779	mRNA_10783-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10783	CDS_10783	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_59:28823..30385-
coding sequence from alignment at scaffold_59:28823..30385-

mRNA sequence

>mRNA_10783 ID=mRNA_10783|Name=jgi.p|Nanoce1779_2|356779|organism=Nannochloropsis oceanica|type=mRNA|length=1053bp
TCACCAACCAAGCACACACGCGCAGATCGAGTATGGCGGCGATTGAGCAC
CGGTCCTGCCTGTACACAAAGCGCCTGACCCAGCGGCAAAAAAAATGGCA
GGACGGCACAATGCTCCTCGACCGCAGCACGGGCAAAGTGCTTATTAAAG
CAGAAAATGGGGACACGGTCCACTCCGCCCTTCTCAAGCCCAACGAAGTC
GCCACTTGGGCGGACGACGACGAAGCGACGGTTGAAGGCGTCTTGCTGGT
CACGGTCGGTGCCTTGTTGGAAGAAGGAGGAGGAAGTGGAGGAGGGGGAG
AAGTTCCCATTTCTGCTCCTGCTGCTGCAATTGCTGGCCCCCCCTCATCT
TTTTCAGTGGCAGCACGGTGCTTTATTCAACGCCCACGTTCACAGGATGA
CCAAGAAGGAGGGGTAGGGGGAGGTAATAAAAAGATGCGAAAAGGATTCA
CCTCTCCTTTTGTCCGTCTCCTGGCAGTCCGTCCGTCCCTCCCTCCCTCC
CCACCCATAGGAGGAGGAGGATGGGAGGGTGGTAGTGATCGTGGTAGTGG
CGGAGGAGGGAGGGAAGGGCCGTCACCGGTGCGACGGAGCGTGCTGCCTC
TCCGCGTTCGAAATAAATTTGTCGCCGCACCGGCTTCTATTCAGGGAGGG
CACGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGTTGGAC
TGACGATAAAAATGGCGGAGAGCCAAGACCTTATCGTTCCCAAGCAGCAG
CAGCAGCTGCTGCTGCCCTTCCTCCTCCTCCTCCTCCTTCACTAGCGCTT
CTTCCAACTCCTCACTCCGCCACCCGTCCTCATCATATTCCTCTCTCCTC
CTCCTCCTCCTCCTCCTTTCGCCCGCCCTCCCTCTGTTCCTCTCTCCCTC
CCTCCCCTTCTTTTCGGGCCAGCACTGCGTCTCTGGAGTTCATGACACCC
GCCGTCCGGGCAGGCATGCCGGCCGTGCGTCCATCACGGAAGAAGTCAAC
TTGGCTTTAGCCGAGGTCGCCACACGCCTTCTGGGGGCTGTCAAAAGGCT
CAA

protein sequence of jgi.p|Nanoce1779_2|356779

>mRNA_10783-protein ID=mRNA_10783-protein|Name=jgi.p|Nanoce1779_2|356779|organism=Nannochloropsis oceanica|type=polypeptide|length=326bp
MAAIEHRSCLYTKRLTQRQKKWQDGTMLLDRSTGKVLIKAENGDTVHSAL
LKPNEVATWADDDEATVEGVLLVTVGALLEEGGGSGGGGEVPISAPAAAI
AGPPSSFSVAARCFIQRPRSQDDQEGGVGGGNKKMRKGFTSPFVRLLAVR
PSLPPSPPIGGGGWEGGSDRGSGGGGREGPSPVRRSVLPLRVRNKFVAAP
ASIQGGHGGGGGGGRGGGGGGWTDDKNGGEPRPYRSQAAAAAAAALPPPP
PPSLALLPTPHSATRPHHIPLSSSSSSSFRPPSLCSSLPPSPSFRASTAS
LEFMTPAVRAGMPAVRPSRKKSTWL*

mRNA from alignment at scaffold_59:28823..30385-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10783 ID=mRNA_10783|Name=jgi.p|Nanoce1779_2|356779|organism=Nannochloropsis oceanica|type=mRNA|length=1563bp|location=Sequence derived from alignment at scaffold_59:28823..30385- (Nannochloropsis oceanica)
TCACCAACCAAGCACACACGCGCAGATCGAGTATGGCGGCGATTGAGCAC
CGGTCCTGCCTGTACACAAAGCGCCTGACCCAGCGGCAAAAAAAATGGCA
GGACGGCACAATGCTCCTCGACCGCAGCACGGGCAAAGTGCTTATTAAAG
CAGAAAATGGGGTACGTGCGTAAAGGAGGACATACTCACTGTTGTTGCAA
CGGCTGGACGCTATACATTTCTTCACTCTTTCCCACTCCCTCCCTCTCCC
TCTACGTAGCTATTACTGCACGTTGATCCCCCCTGTCCTCCCTTGTAATC
CTCGCCTCTCTTCCTCATGCCCTCCTCCCCCTTTCCTCCCTCTTCCCCTC
GAAACCCTAGGACACGGTCCACTCCGCCCTTCTCAAGCCCAACGAAGTCG
CCACTTGGGCGGACGACGACGAAGCGACGGTTGAAGGCGTCTTGCTGGTC
ACGGTCGGTGCCTTGTTGGAAGAAGGAGGAGGAAGTGGAGGAGGGGGAGA
AGTTCCCATTTCTGCTCCTGCTGCTGCAATTGCTGGCCCCCCCTCATCTT
TTTCAGTGGCAGCACGGTGCTTTATTCAACGCCCACGTTCACAGGATGAC
CAAGAAGGAGGGGTAGGGGGAGGTAATAAAAAGATGCGAAAAGGATTCAC
CTCTCCTTTTGTCCGTCTCCTGGCAGTCCGTCCGTCCCTCCCTCCCTCCC
CACCCATAGGAGGAGGAGGATGGGAGGGTGGTAGTGATCGTGGTAGTGGC
GGAGGAGGGAGGGAAGGGCCGTCACCGGTGCGACGGAGCGTGCTGCCTCT
CCGCGTTCGAAATAAATTTGTCGCCGCACCGGCTTCTATTCAGGGAGGGC
ACGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGTTGGACT
GACGATAAAAATGGCGGAGAGCCAAGACCTTATCGTTCCCAAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGGTACTCCAATCTCTGTCG
ACGCCCCTTCCTTCGACCTTCCTGCTGCTGCTGCTGCCCTTCCTCCTCCT
CCTCCTCCTTCACTAGCGCTTCTTCCAACTCCTCACTCCGCCACCCGTCC
TCATCATATTCCTCTCTCCTCCTCCTCCTCCTCCTCCTTTCGCCCGCCCT
CCCTCTGTTCCTCTCTCCCTCCCTCCCCTTCTTTTCGGGCCAGCACTGCG
TCTCTGGAGTTCATGACACCCGCCGTCCGGGCAGGCATGCCGGCCGTGCG
GTAAGGGAGGGAGGGAGGGACGGAGGGAGGCAGGGAGGGAGTGGTGTCGT
GGAAATATTAACGTTCATCATTTTTACCCGAGCGAATTGGACGAAATCCT
TAGCCCTTTCTCCCTCCCTCCCTCCCTCCTTTCCTCCCTCCCTCCCTCCT
TTCCTCCCTCCCTCCCTCCCGCCGTCAGGCATGTCCTCCTCCCTTCCTCC
TTCCCCTCCCCCTCCTCCTATATCCACCTCCTCCTCCAGTCCATCACGGA
AGAAGTCAACTTGGCTTTAGCCGAGGTCGCCACACGCCTTCTGGGGGCTG
TCAAAAGGCTCAA

Coding sequence (CDS) from alignment at scaffold_59:28823..30385-

>mRNA_10783 ID=mRNA_10783|Name=jgi.p|Nanoce1779_2|356779|organism=Nannochloropsis oceanica|type=CDS|length=3912bp|location=Sequence derived from alignment at scaffold_59:28823..30385- (Nannochloropsis oceanica)
TCCATCACGGAAGAAGTCAACTTGGCTTTAGGCTGCTGCTGCCCTTCCTC
CTCCTCCTCCTCCTTCACTAGCGCTTCTTCCAACTCCTCACTCCGCCACC
CGTCCTCATCATATTCCTCTCTCCTCCTCCTCCTCCTCCTCCTTTCGCCC
GCCCTCCCTCTGTTCCTCTCTCCCTCCCTCCCCTTCTTTTCGGGCCAGCA
CTGCGTCTCTGGAGTTCATGACACCCGCCGTCCGGGCAGGCATGCCGGCC
GTGCGGACACGGTCCACTCCGCCCTTCTCAAGCCCAACGAAGTCGCCACT
TGGGCGGACGACGACGAAGCGACGGTTGAAGGCGTCTTGCTGGTCACGGT
CGGTGCCTTGTTGGAAGAAGGAGGAGGAAGTGGAGGAGGGGGAGAAGTTC
CCATTTCTGCTCCTGCTGCTGCAATTGCTGGCCCCCCCTCATCTTTTTCA
GTGGCAGCACGGTGCTTTATTCAACGCCCACGTTCACAGGATGACCAAGA
AGGAGGGGTAGGGGGAGGTAATAAAAAGATGCGAAAAGGATTCACCTCTC
CTTTTGTCCGTCTCCTGGCAGTCCGTCCGTCCCTCCCTCCCTCCCCACCC
ATAGGAGGAGGAGGATGGGAGGGTGGTAGTGATCGTGGTAGTGGCGGAGG
AGGGAGGGAAGGGCCGTCACCGGTGCGACGGAGCGTGCTGCCTCTCCGCG
TTCGAAATAAATTTGTCGCCGCACCGGCTTCTATTCAGGGAGGGCACGGA
GGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGTTGGACTGACGA
TAAAAATGGCGGAGAGCCAAGACCTTATCGTTCCCAAGCAGCAGCAGCAA
TGGCGGCGATTGAGCACCGGTCCTGCCTGTACACAAAGCGCCTGACCCAG
CGGCAAAAAAAATGGCAGGACGGCACAATGCTCCTCGACCGCAGCACGGG
CAAAGTGCTTATTAAAGCAGAAAATGGGTCCATCACGGAAGAAGTCAACT
TGGCTTTAGGCTGCTGCTGCCCTTCCTCCTCCTCCTCCTCCTTCACTAGC
GCTTCTTCCAACTCCTCACTCCGCCACCCGTCCTCATCATATTCCTCTCT
CCTCCTCCTCCTCCTCCTCCTTTCGCCCGCCCTCCCTCTGTTCCTCTCTC
CCTCCCTCCCCTTCTTTTCGGGCCAGCACTGCGTCTCTGGAGTTCATGAC
ACCCGCCGTCCGGGCAGGCATGCCGGCCGTGCGGACACGGTCCACTCCGC
CCTTCTCAAGCCCAACGAAGTCGCCACTTGGGCGGACGACGACGAAGCGA
CGGTTGAAGGCGTCTTGCTGGTCACGGTCGGTGCCTTGTTGGAAGAAGGA
GGAGGAAGTGGAGGAGGGGGAGAAGTTCCCATTTCTGCTCCTGCTGCTGC
AATTGCTGGCCCCCCCTCATCTTTTTCAGTGGCAGCACGGTGCTTTATTC
AACGCCCACGTTCACAGGATGACCAAGAAGGAGGGGTAGGGGGAGGTAAT
AAAAAGATGCGAAAAGGATTCACCTCTCCTTTTGTCCGTCTCCTGGCAGT
CCGTCCGTCCCTCCCTCCCTCCCCACCCATAGGAGGAGGAGGATGGGAGG
GTGGTAGTGATCGTGGTAGTGGCGGAGGAGGGAGGGAAGGGCCGTCACCG
GTGCGACGGAGCGTGCTGCCTCTCCGCGTTCGAAATAAATTTGTCGCCGC
ACCGGCTTCTATTCAGGGAGGGCACGGAGGAGGAGGAGGAGGAGGAAGAG
GAGGAGGAGGAGGAGGTTGGACTGACGATAAAAATGGCGGAGAGCCAAGA
CCTTATCGTTCCCAAGCAGCAGCAGCAATGGCGGCGATTGAGCACCGGTC
CTGCCTGTACACAAAGCGCCTGACCCAGCGGCAAAAAAAATGGCAGGACG
GCACAATGCTCCTCGACCGCAGCACGGGCAAAGTGCTTATTAAAGCAGAA
AATGGGTCCATCACGGAAGAAGTCAACTTGGCTTTAGGCTGCTGCTGCCC
TTCCTCCTCCTCCTCCTCCTTCACTAGCGCTTCTTCCAACTCCTCACTCC
GCCACCCGTCCTCATCATATTCCTCTCTCCTCCTCCTCCTCCTCCTCCTT
TCGCCCGCCCTCCCTCTGTTCCTCTCTCCCTCCCTCCCCTTCTTTTCGGG
CCAGCACTGCGTCTCTGGAGTTCATGACACCCGCCGTCCGGGCAGGCATG
CCGGCCGTGCGGACACGGTCCACTCCGCCCTTCTCAAGCCCAACGAAGTC
GCCACTTGGGCGGACGACGACGAAGCGACGGTTGAAGGCGTCTTGCTGGT
CACGGTCGGTGCCTTGTTGGAAGAAGGAGGAGGAAGTGGAGGAGGGGGAG
AAGTTCCCATTTCTGCTCCTGCTGCTGCAATTGCTGGCCCCCCCTCATCT
TTTTCAGTGGCAGCACGGTGCTTTATTCAACGCCCACGTTCACAGGATGA
CCAAGAAGGAGGGGTAGGGGGAGGTAATAAAAAGATGCGAAAAGGATTCA
CCTCTCCTTTTGTCCGTCTCCTGGCAGTCCGTCCGTCCCTCCCTCCCTCC
CCACCCATAGGAGGAGGAGGATGGGAGGGTGGTAGTGATCGTGGTAGTGG
CGGAGGAGGGAGGGAAGGGCCGTCACCGGTGCGACGGAGCGTGCTGCCTC
TCCGCGTTCGAAATAAATTTGTCGCCGCACCGGCTTCTATTCAGGGAGGG
CACGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGTTGGAC
TGACGATAAAAATGGCGGAGAGCCAAGACCTTATCGTTCCCAAGCAGCAG
CAGCAATGGCGGCGATTGAGCACCGGTCCTGCCTGTACACAAAGCGCCTG
ACCCAGCGGCAAAAAAAATGGCAGGACGGCACAATGCTCCTCGACCGCAG
CACGGGCAAAGTGCTTATTAAAGCAGAAAATGGGTCCATCACGGAAGAAG
TCAACTTGGCTTTAGGCTGCTGCTGCCCTTCCTCCTCCTCCTCCTCCTTC
ACTAGCGCTTCTTCCAACTCCTCACTCCGCCACCCGTCCTCATCATATTC
CTCTCTCCTCCTCCTCCTCCTCCTCCTTTCGCCCGCCCTCCCTCTGTTCC
TCTCTCCCTCCCTCCCCTTCTTTTCGGGCCAGCACTGCGTCTCTGGAGTT
CATGACACCCGCCGTCCGGGCAGGCATGCCGGCCGTGCGGACACGGTCCA
CTCCGCCCTTCTCAAGCCCAACGAAGTCGCCACTTGGGCGGACGACGACG
AAGCGACGGTTGAAGGCGTCTTGCTGGTCACGGTCGGTGCCTTGTTGGAA
GAAGGAGGAGGAAGTGGAGGAGGGGGAGAAGTTCCCATTTCTGCTCCTGC
TGCTGCAATTGCTGGCCCCCCCTCATCTTTTTCAGTGGCAGCACGGTGCT
TTATTCAACGCCCACGTTCACAGGATGACCAAGAAGGAGGGGTAGGGGGA
GGTAATAAAAAGATGCGAAAAGGATTCACCTCTCCTTTTGTCCGTCTCCT
GGCAGTCCGTCCGTCCCTCCCTCCCTCCCCACCCATAGGAGGAGGAGGAT
GGGAGGGTGGTAGTGATCGTGGTAGTGGCGGAGGAGGGAGGGAAGGGCCG
TCACCGGTGCGACGGAGCGTGCTGCCTCTCCGCGTTCGAAATAAATTTGT
CGCCGCACCGGCTTCTATTCAGGGAGGGCACGGAGGAGGAGGAGGAGGAG
GAAGAGGAGGAGGAGGAGGAGGTTGGACTGACGATAAAAATGGCGGAGAG
CCAAGACCTTATCGTTCCCAAGCAGCAGCAGCAATGGCGGCGATTGAGCA
CCGGTCCTGCCTGTACACAAAGCGCCTGACCCAGCGGCAAAAAAAATGGC
AGGACGGCACAATGCTCCTCGACCGCAGCACGGGCAAAGTGCTTATTAAA
GCAGAAAATGGG

Synonyms

Publications