jgi.p|Nanoce1779_2|611681, mRNA_10707 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|611681
Unique Name	mRNA_10707
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2864
Alignment location	scaffold_58:26045..28908 +

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Properties


Property Name	Value
TranscriptId	611767
Track	FilteredModels2
ProteinId	611681

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_58	supercontig	scaffold_58:26045..28908 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611681	gene_10707	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611681	mRNA_10707-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10707	CDS_10707	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_58:26045..28908+
coding sequence from alignment at scaffold_58:26045..28908+

mRNA sequence

>mRNA_10707 ID=mRNA_10707|Name=jgi.p|Nanoce1779_2|611681|organism=Nannochloropsis oceanica|type=mRNA|length=2864bp
AGCAACTCATGGCTATAAGATATATAGATGTAGAACATCTATATAGTGAG
TGCAAGAAGATTTGTCGTATTCTCCCTTGCTTCTTCGAGACACAAGACAC
ATGATTGTCCTTTCTGTTGGGCTTGGAATCAATGAGCATGCGGTCCTTGC
CCCTGTTTGTGGGCAGCCCTTCGTCGTGAGAAGCCAAGGCGATGCTGTGT
GTGGCCGGGAGGCCCATGCGACGAGGCGTTACTTTCTTGGGAGACTTTCT
GGGGGCATCACTCGTCCCTCTTTCCCCTATGTATACCACATGTAGAAACA
GACGATACAAACGATCTCACACACCATGCATACACTCATGGGTGACCTCC
ATGCACGAGGCAGAAAAGGGACAGATCATACACCGTGGTGTCCGTGGAAA
TGGGACTTACGTTCTCATTCTCCTGGTTCTCTCTCACGCTACAGTCTCAA
ACACTTCATACTTCAAGACACAGATACAGATACACGCCGTCTTATAGACT
GGTATTCAACCGAGAAGCATGTACCTGCCCCTCGCCCTCCCCCTGCTTGC
CGTCCTGGGCGGCGCCTGGGCGCCTACCGCCGTCGCCCAGGACTGTCCCG
ATCTTGTTCTGGGCGCCAAGGTGCAACCCAATGCCAAGCGTGGGATCCTG
GCAGGCCGACAGAAGGCCAAGATCACCATCAGGCTTCGAAGTCTGGAAGC
CGCACAGGACGTCAATTTCAAGATGGATCTGCCCGCCGGCTTGTCCGTGG
TGAAGCTGAAGGCCCGCCCGTCCCGCATGCTCTCCCCGGCGCAGAGCATC
CAGAACCCGGATGGGACGACGGCCATCTACTGGACGGACTTTGACTTCAA
AAAGAGCTCCAAGCGTGTCTTCCAGGCCGTGGTGATCGCCGACGACTGTG
CCCCTGAGACGCTGGATGTCACTGCCCTGGCGTACCTTGTCAACGCCACG
GACCTGTCCGCTTACTGTGCTGTACCCTTGGCCGAGCCCGCGGTCGTGCG
TGTGCGGTATCCAGGCGACAAGAAGACGGGCAAACACGCTTCGTCGAAAC
CTGTCACATGCGCGCCGACCCCGGCCCCGAGCGTCAACCCCGCAACTCCC
TTCCAACTTTTTGGTGAGGGGCAGCGATGCTTGCAGGCAGGGCAACTGGC
GCCTTTTGCTCCAGATCGCCGTCTGTCGGCCCTAGATGATGGGGAACTTG
ATTCGCTAAGCGATGTTGGTGGCAAGCACCGTCGACTGCCTGTGCAGATT
GATACCCCGACGGAGTGCTTCGAATACTGCTCGATCAATGGGAATGAATC
GACTCCGTTTTTCTTCAACTGGAACACGGTGACCACTCAGTGCTTTTGCT
GCGGTGGAGAATGTACTTTGATTCTTGACCCTGATTTCAATGCCTTCAAG
GTTGTCGAGGCCGCTACTGGGGCTCCCTCTGCGTCGCCCTCAAGCAGCCC
TTCGGCTTCTCCCTCGGCCTCTCCAACAGCCACGCCTACTACTTCTCCTA
CTACCACGCCTACTACATCTCCGACGGCCACGCCTACTACATCTCCGACG
GCCACGCCTAGTGCGACTCCCGCACCTACTGTTCAACCTTGCTTCAACAA
GGACGCACTCGTGGTCATGGCGGATGGCACGTCTAAGCCCGTTCATGCAC
TTCGCAGAGGCGACCTCGTCTCGGTCGACCCGCACAACCTCCATATCCAT
GCCAAGATGCTTTCTCTTGTTGAGGCTCCCTTGGGCGTGAATGGTGGCGG
CGCGATGATCGACGTATGTGAGCTTGCCCCAGGCTTTCTGATTAATCCTA
CTCATCCACTCCTCATGAATGGAACCCGCTGGATTCGTCCCCACTGGGAG
TTCGCCTGTGACACTAAGAGGCACTTCCCGAGCCTCTTTTCGATTGTGTT
GGAGGAAGGTCCGCACCATACAGTTAACATCCAGGGAATTGCCGTGGGCA
CGTTCGTCAAGTATCCCGTGGGTGTGCCCATGATTGATCGACCCTACAAG
TTGGAGCAGTACCGCATTGTGGAACAGAGCCCCGGGTTCGCAACGGGACA
TGTGGTGATCGACACACTGAAATTCCTCCAAATCAAGAGGGACTGGCAGC
TCGCCAATCCGATTGCTGCGGCGGAGGACTCTCATCAGGTGTCGTCGCTG
CCGCCGGTGTCATCCGTGCATTCCCCCCACATGGAGCTTTAGGCACGCTT
CTAATAAAGTAGAGGTGACGATCGATGGTAATGATATACGTATTTTGTCG
TTGTCTCCCTCAAGCAGTCTGTCTGCATTTCTCCCAGTACTATCGTATTT
CTATTTCGTCGTAGATCGGTTCAAATAAGAGAAAACACCTAAGGAGGCTG
ATTGGTCTGTATAAATCGCTCTCCCTGACCATCCGTAGTCTCCTTCGCCA
GATACGTCGATGAAATGTATGAAGATTATAGGCTTTACCACGGTCGATAT
CGATTTCACAAACAAGAAATTACAATTTCACAAACAGAAAATTATGCGTA
AGGGGGGTTTGATTATTTTCAAAATCAGTGAACGAAGAAAGGCATTGGGC
ATAGAGTCTGGCACTTTTTATTTCTTCTAAGATATATAGGATGGAAACAG
CCCCTCCCAACCAAACAAGAATATGCATAGCACATTCGTACAGGCGGACG
CTCTTGTTGGTTGCCCCACAAAACTAAGGAAATATGTATCAAGAACTTCC
CGAAAGAAAAGAGAAGAAAACTTGAAGAAATGACAAAGAAGAGGAAAAGA
GAGAAGAACAAATGAACGCATTCCGATGTGACCTAATTGTATCTCTTCCA
CCTTCAGGCAGAAAACAAGTCGTCTCTTTATGTTCCTTTGGTTCATCACC
CTCACCTACATCCC

protein sequence of jgi.p|Nanoce1779_2|611681

>mRNA_10707-protein ID=mRNA_10707-protein|Name=jgi.p|Nanoce1779_2|611681|organism=Nannochloropsis oceanica|type=polypeptide|length=558bp
MYLPLALPLLAVLGGAWAPTAVAQDCPDLVLGAKVQPNAKRGILAGRQKA
KITIRLRSLEAAQDVNFKMDLPAGLSVVKLKARPSRMLSPAQSIQNPDGT
TAIYWTDFDFKKSSKRVFQAVVIADDCAPETLDVTALAYLVNATDLSAYC
AVPLAEPAVVRVRYPGDKKTGKHASSKPVTCAPTPAPSVNPATPFQLFGE
GQRCLQAGQLAPFAPDRRLSALDDGELDSLSDVGGKHRRLPVQIDTPTEC
FEYCSINGNESTPFFFNWNTVTTQCFCCGGECTLILDPDFNAFKVVEAAT
GAPSASPSSSPSASPSASPTATPTTSPTTTPTTSPTATPTTSPTATPSAT
PAPTVQPCFNKDALVVMADGTSKPVHALRRGDLVSVDPHNLHIHAKMLSL
VEAPLGVNGGGAMIDVCELAPGFLINPTHPLLMNGTRWIRPHWEFACDTK
RHFPSLFSIVLEEGPHHTVNIQGIAVGTFVKYPVGVPMIDRPYKLEQYRI
VEQSPGFATGHVVIDTLKFLQIKRDWQLANPIAAAEDSHQVSSLPPVSSV
HSPHMEL*

mRNA from alignment at scaffold_58:26045..28908+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10707 ID=mRNA_10707|Name=jgi.p|Nanoce1779_2|611681|organism=Nannochloropsis oceanica|type=mRNA|length=2864bp|location=Sequence derived from alignment at scaffold_58:26045..28908+ (Nannochloropsis oceanica)
AGCAACTCATGGCTATAAGATATATAGATGTAGAACATCTATATAGTGAG
TGCAAGAAGATTTGTCGTATTCTCCCTTGCTTCTTCGAGACACAAGACAC
ATGATTGTCCTTTCTGTTGGGCTTGGAATCAATGAGCATGCGGTCCTTGC
CCCTGTTTGTGGGCAGCCCTTCGTCGTGAGAAGCCAAGGCGATGCTGTGT
GTGGCCGGGAGGCCCATGCGACGAGGCGTTACTTTCTTGGGAGACTTTCT
GGGGGCATCACTCGTCCCTCTTTCCCCTATGTATACCACATGTAGAAACA
GACGATACAAACGATCTCACACACCATGCATACACTCATGGGTGACCTCC
ATGCACGAGGCAGAAAAGGGACAGATCATACACCGTGGTGTCCGTGGAAA
TGGGACTTACGTTCTCATTCTCCTGGTTCTCTCTCACGCTACAGTCTCAA
ACACTTCATACTTCAAGACACAGATACAGATACACGCCGTCTTATAGACT
GGTATTCAACCGAGAAGCATGTACCTGCCCCTCGCCCTCCCCCTGCTTGC
CGTCCTGGGCGGCGCCTGGGCGCCTACCGCCGTCGCCCAGGACTGTCCCG
ATCTTGTTCTGGGCGCCAAGGTGCAACCCAATGCCAAGCGTGGGATCCTG
GCAGGCCGACAGAAGGCCAAGATCACCATCAGGCTTCGAAGTCTGGAAGC
CGCACAGGACGTCAATTTCAAGATGGATCTGCCCGCCGGCTTGTCCGTGG
TGAAGCTGAAGGCCCGCCCGTCCCGCATGCTCTCCCCGGCGCAGAGCATC
CAGAACCCGGATGGGACGACGGCCATCTACTGGACGGACTTTGACTTCAA
AAAGAGCTCCAAGCGTGTCTTCCAGGCCGTGGTGATCGCCGACGACTGTG
CCCCTGAGACGCTGGATGTCACTGCCCTGGCGTACCTTGTCAACGCCACG
GACCTGTCCGCTTACTGTGCTGTACCCTTGGCCGAGCCCGCGGTCGTGCG
TGTGCGGTATCCAGGCGACAAGAAGACGGGCAAACACGCTTCGTCGAAAC
CTGTCACATGCGCGCCGACCCCGGCCCCGAGCGTCAACCCCGCAACTCCC
TTCCAACTTTTTGGTGAGGGGCAGCGATGCTTGCAGGCAGGGCAACTGGC
GCCTTTTGCTCCAGATCGCCGTCTGTCGGCCCTAGATGATGGGGAACTTG
ATTCGCTAAGCGATGTTGGTGGCAAGCACCGTCGACTGCCTGTGCAGATT
GATACCCCGACGGAGTGCTTCGAATACTGCTCGATCAATGGGAATGAATC
GACTCCGTTTTTCTTCAACTGGAACACGGTGACCACTCAGTGCTTTTGCT
GCGGTGGAGAATGTACTTTGATTCTTGACCCTGATTTCAATGCCTTCAAG
GTTGTCGAGGCCGCTACTGGGGCTCCCTCTGCGTCGCCCTCAAGCAGCCC
TTCGGCTTCTCCCTCGGCCTCTCCAACAGCCACGCCTACTACTTCTCCTA
CTACCACGCCTACTACATCTCCGACGGCCACGCCTACTACATCTCCGACG
GCCACGCCTAGTGCGACTCCCGCACCTACTGTTCAACCTTGCTTCAACAA
GGACGCACTCGTGGTCATGGCGGATGGCACGTCTAAGCCCGTTCATGCAC
TTCGCAGAGGCGACCTCGTCTCGGTCGACCCGCACAACCTCCATATCCAT
GCCAAGATGCTTTCTCTTGTTGAGGCTCCCTTGGGCGTGAATGGTGGCGG
CGCGATGATCGACGTATGTGAGCTTGCCCCAGGCTTTCTGATTAATCCTA
CTCATCCACTCCTCATGAATGGAACCCGCTGGATTCGTCCCCACTGGGAG
TTCGCCTGTGACACTAAGAGGCACTTCCCGAGCCTCTTTTCGATTGTGTT
GGAGGAAGGTCCGCACCATACAGTTAACATCCAGGGAATTGCCGTGGGCA
CGTTCGTCAAGTATCCCGTGGGTGTGCCCATGATTGATCGACCCTACAAG
TTGGAGCAGTACCGCATTGTGGAACAGAGCCCCGGGTTCGCAACGGGACA
TGTGGTGATCGACACACTGAAATTCCTCCAAATCAAGAGGGACTGGCAGC
TCGCCAATCCGATTGCTGCGGCGGAGGACTCTCATCAGGTGTCGTCGCTG
CCGCCGGTGTCATCCGTGCATTCCCCCCACATGGAGCTTTAGGCACGCTT
CTAATAAAGTAGAGGTGACGATCGATGGTAATGATATACGTATTTTGTCG
TTGTCTCCCTCAAGCAGTCTGTCTGCATTTCTCCCAGTACTATCGTATTT
CTATTTCGTCGTAGATCGGTTCAAATAAGAGAAAACACCTAAGGAGGCTG
ATTGGTCTGTATAAATCGCTCTCCCTGACCATCCGTAGTCTCCTTCGCCA
GATACGTCGATGAAATGTATGAAGATTATAGGCTTTACCACGGTCGATAT
CGATTTCACAAACAAGAAATTACAATTTCACAAACAGAAAATTATGCGTA
AGGGGGGTTTGATTATTTTCAAAATCAGTGAACGAAGAAAGGCATTGGGC
ATAGAGTCTGGCACTTTTTATTTCTTCTAAGATATATAGGATGGAAACAG
CCCCTCCCAACCAAACAAGAATATGCATAGCACATTCGTACAGGCGGACG
CTCTTGTTGGTTGCCCCACAAAACTAAGGAAATATGTATCAAGAACTTCC
CGAAAGAAAAGAGAAGAAAACTTGAAGAAATGACAAAGAAGAGGAAAAGA
GAGAAGAACAAATGAACGCATTCCGATGTGACCTAATTGTATCTCTTCCA
CCTTCAGGCAGAAAACAAGTCGTCTCTTTATGTTCCTTTGGTTCATCACC
CTCACCTACATCCC

Coding sequence (CDS) from alignment at scaffold_58:26045..28908+

>mRNA_10707 ID=mRNA_10707|Name=jgi.p|Nanoce1779_2|611681|organism=Nannochloropsis oceanica|type=CDS|length=1674bp|location=Sequence derived from alignment at scaffold_58:26045..28908+ (Nannochloropsis oceanica)
ATGTACCTGCCCCTCGCCCTCCCCCTGCTTGCCGTCCTGGGCGGCGCCTG
GGCGCCTACCGCCGTCGCCCAGGACTGTCCCGATCTTGTTCTGGGCGCCA
AGGTGCAACCCAATGCCAAGCGTGGGATCCTGGCAGGCCGACAGAAGGCC
AAGATCACCATCAGGCTTCGAAGTCTGGAAGCCGCACAGGACGTCAATTT
CAAGATGGATCTGCCCGCCGGCTTGTCCGTGGTGAAGCTGAAGGCCCGCC
CGTCCCGCATGCTCTCCCCGGCGCAGAGCATCCAGAACCCGGATGGGACG
ACGGCCATCTACTGGACGGACTTTGACTTCAAAAAGAGCTCCAAGCGTGT
CTTCCAGGCCGTGGTGATCGCCGACGACTGTGCCCCTGAGACGCTGGATG
TCACTGCCCTGGCGTACCTTGTCAACGCCACGGACCTGTCCGCTTACTGT
GCTGTACCCTTGGCCGAGCCCGCGGTCGTGCGTGTGCGGTATCCAGGCGA
CAAGAAGACGGGCAAACACGCTTCGTCGAAACCTGTCACATGCGCGCCGA
CCCCGGCCCCGAGCGTCAACCCCGCAACTCCCTTCCAACTTTTTGGTGAG
GGGCAGCGATGCTTGCAGGCAGGGCAACTGGCGCCTTTTGCTCCAGATCG
CCGTCTGTCGGCCCTAGATGATGGGGAACTTGATTCGCTAAGCGATGTTG
GTGGCAAGCACCGTCGACTGCCTGTGCAGATTGATACCCCGACGGAGTGC
TTCGAATACTGCTCGATCAATGGGAATGAATCGACTCCGTTTTTCTTCAA
CTGGAACACGGTGACCACTCAGTGCTTTTGCTGCGGTGGAGAATGTACTT
TGATTCTTGACCCTGATTTCAATGCCTTCAAGGTTGTCGAGGCCGCTACT
GGGGCTCCCTCTGCGTCGCCCTCAAGCAGCCCTTCGGCTTCTCCCTCGGC
CTCTCCAACAGCCACGCCTACTACTTCTCCTACTACCACGCCTACTACAT
CTCCGACGGCCACGCCTACTACATCTCCGACGGCCACGCCTAGTGCGACT
CCCGCACCTACTGTTCAACCTTGCTTCAACAAGGACGCACTCGTGGTCAT
GGCGGATGGCACGTCTAAGCCCGTTCATGCACTTCGCAGAGGCGACCTCG
TCTCGGTCGACCCGCACAACCTCCATATCCATGCCAAGATGCTTTCTCTT
GTTGAGGCTCCCTTGGGCGTGAATGGTGGCGGCGCGATGATCGACGTATG
TGAGCTTGCCCCAGGCTTTCTGATTAATCCTACTCATCCACTCCTCATGA
ATGGAACCCGCTGGATTCGTCCCCACTGGGAGTTCGCCTGTGACACTAAG
AGGCACTTCCCGAGCCTCTTTTCGATTGTGTTGGAGGAAGGTCCGCACCA
TACAGTTAACATCCAGGGAATTGCCGTGGGCACGTTCGTCAAGTATCCCG
TGGGTGTGCCCATGATTGATCGACCCTACAAGTTGGAGCAGTACCGCATT
GTGGAACAGAGCCCCGGGTTCGCAACGGGACATGTGGTGATCGACACACT
GAAATTCCTCCAAATCAAGAGGGACTGGCAGCTCGCCAATCCGATTGCTG
CGGCGGAGGACTCTCATCAGGTGTCGTCGCTGCCGCCGGTGTCATCCGTG
CATTCCCCCCACATGGAGCTTTAG

Synonyms

Publications