jgi.p|Nanoce1779_2|582824, mRNA_3628 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582824
Unique NamemRNA_3628
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1817
Alignment locationscaffold_6:808789..810605 -

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Properties
Property NameValue
TranscriptId582910
TrackFilteredModels2
ProteinId582824
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:808789..810605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582824gene_3628Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582824mRNA_3628-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3628CDS_3628Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3628 ID=mRNA_3628|Name=jgi.p|Nanoce1779_2|582824|organism=Nannochloropsis oceanica|type=mRNA|length=1817bp
GACGAACGCTTGTAAACGGAAGTTCTTCTTCCATCCCATGACGCGCGTGC
TTCTTTTCCCACGCATTTGCCTTGTTTGTGGAGCAACTCTCCCCTCGCCC
ACGCATAATGACATATCAGAGCTAATGTTTGATTTGGATGCGGTGGACAA
GCCTGAATAACGCATGTTGGCTTGCTTCATCTTAGCTCCTCAGCGGCTGC
GATGTGTCGACCCCCGGTCTTGCATCCACGCGGACTACACGAGCCTACGC
GATTTATCATTCCATTGTTACCCTTTGGCTGCACAGGACGTGCACCTACC
CATGCGCCCCCCCTTAGCTTCCCGTCCCATCCACTCTGTGGAAAGCAGCG
CGTACTTGCTCTGGGCCTTGCATTTTCCTGTCTCTGGATGGCTTCACTCA
TACTCAAGGCCTCCATTATCGAGCTCTTAATGTGGTCTGTCTTCTGTCTT
ACCCACTTACCCCATTCATCCCTTACCCACGACAAACAGGATGGGGGGAA
GCAAAGGCCATCATCCGCATCCCCACCAAGACCGCGGGGAGATAGATGAA
AATGACGACGATGACGTTCTTATCCTTGCCCCACCTGTGAGCAGCAGGGA
CGAAGGGGCAGGTGGTGGCTTTGTTTTTGCCGATACTCGGACCTGTTGGG
ACCTCGAGGTTTGGATACAGGGCGCCTTGTTCACGCAAAGCTCCGCCTGC
CCTATGGACAATTACGGCGCATTTGTGACAGCCTCCATAGCCGGCAAGTC
TGTGAGCACCGCGAATGCTGATCCATTCGGCTCGTCTGTCATGTGGAACG
AGAAGCTATCTCTGGGCTGCCACATCAAAAATGAGCCTCTGGTTTTTCGA
TTGTATGCTGGCGAGAATGCCAAGTCGGCGCCTTGTGCACAGTGGACAAT
GAAAGATTGGCTTGCCGAAGCGGCACTAAATGATGTACCTGTCGGAGGTC
CCGAAGAAAACGTGCTTACCAATTCCGTTGTTTTCCTTGGCCGTGCGAAT
CTGATGGTACAACTTGCCTCCTTCGTCCATCATGACCCGCCTCCCCAAAA
AGGTATCATCTCCTTAGACGACTTTTCATTTGATGGTGGCGAAAGCATCG
GTGGTTTGATTGGTGGAGTGCTCCTCATCATGTTCATCGTTTTTGTCTCC
CTGTGGTGCTGTTGCATTTGCTGCTGTCCCCGGACATATCAAGAGCGCCG
GCGTCGATTATGGGTGACCAGTGGAGCCTCAACAGCAGCAGTGGCAACTA
CTTCTCGCCCTCCTCCTCCTCCTTCTCGCCCTCCTCCTCCCCCCCCCCCT
TCCTCCTTCTGTATCTTGCCCACGTCCTACTCCACCACCCCCACCTTTTT
CTTCACCTTGGTATAGTCGTCCTCCCCCTTTCGCTACCAGCAGCAACAAC
AACAGCTGCAGCAATAGCAGGAGCAATAACAACACCGGTGGTGGTGGTCT
TTTCTCAACTTTCTATGGACGCCCCCAGCCATATGTCCCTTCTGCTTCTG
CTCCTTTTGCTTATGTTCAATCACATCCACAGCAGCAACAGCAACGGCAG
CCATCACAGGTAGCTGTTGCCATGCCTGTGGCTGAAGCCATCGGTACCTC
GAACCGAGAAGGGGGAGGAAATGTGCCTTTAGCGGAGGCAAGGGTCATGA
CGAGCTTTAATGCTGGAGGCGGAGGAGGGAGGATGGGAGAAGGAGGAGGA
GGGAGGCAGGACCGGGGACGGAAGTTTAGTGTTTAAATAAATGAAAAAGA
AGGGAATGAACAAAGTATTTGCATTGAATTCACTGACAGGGCTCGAAATG
AATATGCACGATTGGCT
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protein sequence of jgi.p|Nanoce1779_2|582824

>mRNA_3628-protein ID=mRNA_3628-protein|Name=jgi.p|Nanoce1779_2|582824|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MGGSKGHHPHPHQDRGEIDENDDDDVLILAPPVSSRDEGAGGGFVFADTR
TCWDLEVWIQGALFTQSSACPMDNYGAFVTASIAGKSVSTANADPFGSSV
MWNEKLSLGCHIKNEPLVFRLYAGENAKSAPCAQWTMKDWLAEAALNDVP
VGGPEENVLTNSVVFLGRANLMVQLASFVHHDPPPQKGIISLDDFSFDGG
ESIGGLIGGVLLIMFIVFVSLWCCCICCCPRTYQERRRRLWVTSGASTAA
VATTSRPPPPPSRPPPPPPPSSFCILPTSYSTTPTFFFTLV*
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mRNA from alignment at scaffold_6:808789..810605-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3628 ID=mRNA_3628|Name=jgi.p|Nanoce1779_2|582824|organism=Nannochloropsis oceanica|type=mRNA|length=1817bp|location=Sequence derived from alignment at scaffold_6:808789..810605- (Nannochloropsis oceanica)
GACGAACGCTTGTAAACGGAAGTTCTTCTTCCATCCCATGACGCGCGTGC
TTCTTTTCCCACGCATTTGCCTTGTTTGTGGAGCAACTCTCCCCTCGCCC
ACGCATAATGACATATCAGAGCTAATGTTTGATTTGGATGCGGTGGACAA
GCCTGAATAACGCATGTTGGCTTGCTTCATCTTAGCTCCTCAGCGGCTGC
GATGTGTCGACCCCCGGTCTTGCATCCACGCGGACTACACGAGCCTACGC
GATTTATCATTCCATTGTTACCCTTTGGCTGCACAGGACGTGCACCTACC
CATGCGCCCCCCCTTAGCTTCCCGTCCCATCCACTCTGTGGAAAGCAGCG
CGTACTTGCTCTGGGCCTTGCATTTTCCTGTCTCTGGATGGCTTCACTCA
TACTCAAGGCCTCCATTATCGAGCTCTTAATGTGGTCTGTCTTCTGTCTT
ACCCACTTACCCCATTCATCCCTTACCCACGACAAACAGGATGGGGGGAA
GCAAAGGCCATCATCCGCATCCCCACCAAGACCGCGGGGAGATAGATGAA
AATGACGACGATGACGTTCTTATCCTTGCCCCACCTGTGAGCAGCAGGGA
CGAAGGGGCAGGTGGTGGCTTTGTTTTTGCCGATACTCGGACCTGTTGGG
ACCTCGAGGTTTGGATACAGGGCGCCTTGTTCACGCAAAGCTCCGCCTGC
CCTATGGACAATTACGGCGCATTTGTGACAGCCTCCATAGCCGGCAAGTC
TGTGAGCACCGCGAATGCTGATCCATTCGGCTCGTCTGTCATGTGGAACG
AGAAGCTATCTCTGGGCTGCCACATCAAAAATGAGCCTCTGGTTTTTCGA
TTGTATGCTGGCGAGAATGCCAAGTCGGCGCCTTGTGCACAGTGGACAAT
GAAAGATTGGCTTGCCGAAGCGGCACTAAATGATGTACCTGTCGGAGGTC
CCGAAGAAAACGTGCTTACCAATTCCGTTGTTTTCCTTGGCCGTGCGAAT
CTGATGGTACAACTTGCCTCCTTCGTCCATCATGACCCGCCTCCCCAAAA
AGGTATCATCTCCTTAGACGACTTTTCATTTGATGGTGGCGAAAGCATCG
GTGGTTTGATTGGTGGAGTGCTCCTCATCATGTTCATCGTTTTTGTCTCC
CTGTGGTGCTGTTGCATTTGCTGCTGTCCCCGGACATATCAAGAGCGCCG
GCGTCGATTATGGGTGACCAGTGGAGCCTCAACAGCAGCAGTGGCAACTA
CTTCTCGCCCTCCTCCTCCTCCTTCTCGCCCTCCTCCTCCCCCCCCCCCT
TCCTCCTTCTGTATCTTGCCCACGTCCTACTCCACCACCCCCACCTTTTT
CTTCACCTTGGTATAGTCGTCCTCCCCCTTTCGCTACCAGCAGCAACAAC
AACAGCTGCAGCAATAGCAGGAGCAATAACAACACCGGTGGTGGTGGTCT
TTTCTCAACTTTCTATGGACGCCCCCAGCCATATGTCCCTTCTGCTTCTG
CTCCTTTTGCTTATGTTCAATCACATCCACAGCAGCAACAGCAACGGCAG
CCATCACAGGTAGCTGTTGCCATGCCTGTGGCTGAAGCCATCGGTACCTC
GAACCGAGAAGGGGGAGGAAATGTGCCTTTAGCGGAGGCAAGGGTCATGA
CGAGCTTTAATGCTGGAGGCGGAGGAGGGAGGATGGGAGAAGGAGGAGGA
GGGAGGCAGGACCGGGGACGGAAGTTTAGTGTTTAAATAAATGAAAAAGA
AGGGAATGAACAAAGTATTTGCATTGAATTCACTGACAGGGCTCGAAATG
AATATGCACGATTGGCT
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Coding sequence (CDS) from alignment at scaffold_6:808789..810605-

>mRNA_3628 ID=mRNA_3628|Name=jgi.p|Nanoce1779_2|582824|organism=Nannochloropsis oceanica|type=CDS|length=876bp|location=Sequence derived from alignment at scaffold_6:808789..810605- (Nannochloropsis oceanica)
ATGGGGGGAAGCAAAGGCCATCATCCGCATCCCCACCAAGACCGCGGGGA
GATAGATGAAAATGACGACGATGACGTTCTTATCCTTGCCCCACCTGTGA
GCAGCAGGGACGAAGGGGCAGGTGGTGGCTTTGTTTTTGCCGATACTCGG
ACCTGTTGGGACCTCGAGGTTTGGATACAGGGCGCCTTGTTCACGCAAAG
CTCCGCCTGCCCTATGGACAATTACGGCGCATTTGTGACAGCCTCCATAG
CCGGCAAGTCTGTGAGCACCGCGAATGCTGATCCATTCGGCTCGTCTGTC
ATGTGGAACGAGAAGCTATCTCTGGGCTGCCACATCAAAAATGAGCCTCT
GGTTTTTCGATTGTATGCTGGCGAGAATGCCAAGTCGGCGCCTTGTGCAC
AGTGGACAATGAAAGATTGGCTTGCCGAAGCGGCACTAAATGATGTACCT
GTCGGAGGTCCCGAAGAAAACGTGCTTACCAATTCCGTTGTTTTCCTTGG
CCGTGCGAATCTGATGGTACAACTTGCCTCCTTCGTCCATCATGACCCGC
CTCCCCAAAAAGGTATCATCTCCTTAGACGACTTTTCATTTGATGGTGGC
GAAAGCATCGGTGGTTTGATTGGTGGAGTGCTCCTCATCATGTTCATCGT
TTTTGTCTCCCTGTGGTGCTGTTGCATTTGCTGCTGTCCCCGGACATATC
AAGAGCGCCGGCGTCGATTATGGGTGACCAGTGGAGCCTCAACAGCAGCA
GTGGCAACTACTTCTCGCCCTCCTCCTCCTCCTTCTCGCCCTCCTCCTCC
CCCCCCCCCTTCCTCCTTCTGTATCTTGCCCACGTCCTACTCCACCACCC
CCACCTTTTTCTTCACCTTGGTATAG
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Synonyms
Publications