jgi.p|Nanoce1779_2|663586, mRNA_10323 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|663586
Unique NamemRNA_10323
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1448
Alignment locationscaffold_60:71744..73343 -

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Properties
Property NameValue
TranscriptId663672
TrackFilteredModels2
ProteinId663586
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:71744..73343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|663586gene_10323Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|663586mRNA_10323-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10323CDS_10323Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10323 ID=mRNA_10323|Name=jgi.p|Nanoce1779_2|663586|organism=Nannochloropsis oceanica|type=mRNA|length=1448bp
GGAGGGGAGAAATGAAGGAGGACGAGAGGGAGGGAGGGAGCGACGCTAAA
TCGCCTGACGGGCAAAGCAAACAAGTCAGAGGGTCGTGGATTGCGACATA
TATCATCATCTTCCACTCACGTCCTGCCTCCCTCACTCTTTCCCTTCCTC
CCTTCCTATTCCTCAGGTGGTCCGCTTGGGAGAGCGCTTGGAAATGCTAC
GGCCCATTTTCAAGCTGATTGCCAAGCGGGAGGAGTTCCTGCAAGAGCGC
AAAGAGATGGAGGAGCTCCAGAAAGACAGCAAGACTCGGCTGACGGATCG
CGGGGGTAAGCGCATCGAGGAGCTGATGCGTATCGAGAAGATGGACAAGC
ACGTGAAGAAGGACCTGCCCGTCCTGACGGAGAGGCTGAGGAAGCGGTTG
GTGGAGTGGGAGAGGACAAAGGAGGAAGGCGACGGGTCGCCGTTCTTGTT
CCGAGGTGTGTCGTATTTACAGACGATGGACGAGGAGGAGGAGGCCTGGT
TGCGGCACAAGGAGGCGCAGCGGCTGGAAAAGGAGCAGAAGAAGAAGGAG
GAGCTGGATCGGTACAGGGAGTCGCACGGAGGGCCGGTGTCGAGTGTGGC
GGGGGGAGGGAAGGAGGGAGGAGGAGGTGGAAATTTCTTGCCTCGAGCGT
CCGGGATGGGCGCGAGCAAGACCCCAAAGAAGGGGGGGGCAGGGAGCGGG
GGAGGGAGCGGGGGAGGGACCGGCGGAGGGACCGGGGGAGGAGGCGGCCC
CATGTCGGCGAAGAAGGGAGGGAGTACGTGCACGTTTGGAGGAGGAAGCA
GCCGAGGGATTGAGACCCCGGGCAAGGCCCGTCGGCCCGGGCAGGTAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGGCCTAAGACGCCGGGGGCAGG
GGTTAGAAAGGCAGTGGCCGCTGCTGTGGGGGCCAGGGCGGGGGGGAAGG
TGGGAGGGGATGACCAGGAGACGGCTAGCACATGCAGTGGGCCGAGGTCA
GAGGCATCTTCCGTGTCGTCCTCCTTCTCGTCCTTGTCGTGAGGGAGGGA
GGGAGGGAGGGAAAGGAAGAGGGGACTCTAGGTGTGGCTCAAATGACAGG
GAAATCAAATCGGAGTCAGACGGGAGGGGATTGTCGATGGAGGGGCCTTT
GGACTATAAAGAGGAAAAAGCCAGTTGGGAGGGAGGAAGGGAGAGGAAGG
GCAGGAGGTTGCGAGAAACGTATCGGTTTGTTTAAATTGTTTGTTACATA
TTGAGGCACCCTCACCCACCCATCACCTCACGGGTACGACGAGTACGAGT
ACGACGGTTGACGATAGATATTTATGAGCGAGAAAATAAGGATGATAAAA
GGGCAAGCGAAGGCGCGAGTCACCCGGGCTCGTGAAGTTATGGAAGAAAG
TACATTCATCTACAAACTACAAGGAGAGACGAAACGACGTGTGGCAGG
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protein sequence of jgi.p|Nanoce1779_2|663586

>mRNA_10323-protein ID=mRNA_10323-protein|Name=jgi.p|Nanoce1779_2|663586|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MLRPIFKLIAKREEFLQERKEMEELQKDSKTRLTDRGGKRIEELMRIEKM
DKHVKKDLPVLTERLRKRLVEWERTKEEGDGSPFLFRGVSYLQTMDEEEE
AWLRHKEAQRLEKEQKKKEELDRYRESHGGPVSSVAGGGKEGGGGGNFLP
RASGMGASKTPKKGGAGSGGGSGGGTGGGTGGGGGPMSAKKGGSTCTFGG
GSSRGIETPGKARRPGQVGGGGGGGGGGGPKTPGAGVRKAVAAAVGARAG
GKVGGDDQETASTCSGPRSEASSVSSSFSSLS*
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mRNA from alignment at scaffold_60:71744..73343-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10323 ID=mRNA_10323|Name=jgi.p|Nanoce1779_2|663586|organism=Nannochloropsis oceanica|type=mRNA|length=1600bp|location=Sequence derived from alignment at scaffold_60:71744..73343- (Nannochloropsis oceanica)
GGAGGGGAGAAATGAAGGAGGACGAGAGGGAGGGAGGGAGCGACGCTAAA
TCGCCTGACGGGCAAAGCAAACAAGTCAGAGGGTCGTGGATTGCGACATA
TATCATCATCTTCCACTCACGTCCTGCCTCCCTCACTCTTTCCCTTCCTC
CCTTCCTATTCCTCAGGTGGTCCGCTTGGGAGAGCGCTTGGAAATGCTAC
GGCCCATTTTCAAGCTGATTGCCAAGCGGGAGGAGTTCCTGCAAGAGCGC
AAAGAGGTACGTAGGGAGGAAGGAAAGTAGGGAGGGAGGAGGGAGGGAAG
GGCAGCGAGAGGGACAATCAGACAAAAGGGGAGAAGGGACCCCTGATACT
TCCCTTTTCCTCCCTCCCTCCCTCCCTCCCACCCCCCTTCCCTCGTTCCT
GTTCTCAGATGGAGGAGCTCCAGAAAGACAGCAAGACTCGGCTGACGGAT
CGCGGGGGTAAGCGCATCGAGGAGCTGATGCGTATCGAGAAGATGGACAA
GCACGTGAAGAAGGACCTGCCCGTCCTGACGGAGAGGCTGAGGAAGCGGT
TGGTGGAGTGGGAGAGGACAAAGGAGGAAGGCGACGGGTCGCCGTTCTTG
TTCCGAGGTGTGTCGTATTTACAGACGATGGACGAGGAGGAGGAGGCCTG
GTTGCGGCACAAGGAGGCGCAGCGGCTGGAAAAGGAGCAGAAGAAGAAGG
AGGAGCTGGATCGGTACAGGGAGTCGCACGGAGGGCCGGTGTCGAGTGTG
GCGGGGGGAGGGAAGGAGGGAGGAGGAGGTGGAAATTTCTTGCCTCGAGC
GTCCGGGATGGGCGCGAGCAAGACCCCAAAGAAGGGGGGGGCAGGGAGCG
GGGGAGGGAGCGGGGGAGGGACCGGCGGAGGGACCGGGGGAGGAGGCGGC
CCCATGTCGGCGAAGAAGGGAGGGAGTACGTGCACGTTTGGAGGAGGAAG
CAGCCGAGGGATTGAGACCCCGGGCAAGGCCCGTCGGCCCGGGCAGGTAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGCCTAAGACGCCGGGGGCA
GGGGTTAGAAAGGCAGTGGCCGCTGCTGTGGGGGCCAGGGCGGGGGGGAA
GGTGGGAGGGGATGACCAGGAGACGGCTAGCACATGCAGTGGGCCGAGGT
CAGAGGCATCTTCCGTGTCGTCCTCCTTCTCGTCCTTGTCGTGAGGGAGG
GAGGGAGGGAGGGAAAGGAAGAGGGGACTCTAGGTGTGGCTCAAATGACA
GGGAAATCAAATCGGAGTCAGACGGGAGGGGATTGTCGATGGAGGGGCCT
TTGGACTATAAAGAGGAAAAAGCCAGTTGGGAGGGAGGAAGGGAGAGGAA
GGGCAGGAGGTTGCGAGAAACGTATCGGTTTGTTTAAATTGTTTGTTACA
TATTGAGGCACCCTCACCCACCCATCACCTCACGGGTACGACGAGTACGA
GTACGACGGTTGACGATAGATATTTATGAGCGAGAAAATAAGGATGATAA
AAGGGCAAGCGAAGGCGCGAGTCACCCGGGCTCGTGAAGTTATGGAAGAA
AGTACATTCATCTACAAACTACAAGGAGAGACGAAACGACGTGTGGCAGG
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Coding sequence (CDS) from alignment at scaffold_60:71744..73343-

>mRNA_10323 ID=mRNA_10323|Name=jgi.p|Nanoce1779_2|663586|organism=Nannochloropsis oceanica|type=CDS|length=1698bp|location=Sequence derived from alignment at scaffold_60:71744..73343- (Nannochloropsis oceanica)
ATGGAGGAGCTCCAGAAAGACAGCAAGACTCGGCTGACGGATCGCGGGGG
TAAGCGCATCGAGGAGCTGATGCGTATCGAGAAGATGGACAAGCACGTGA
AGAAGGACCTGCCCGTCCTGACGGAGAGGCTGAGGAAGCGGTTGGTGGAG
TGGGAGAGGACAAAGGAGGAAGGCGACGGGTCGCCGTTCTTGTTCCGAGG
TGTGTCGTATTTACAGACGATGGACGAGGAGGAGGAGGCCTGGTTGCGGC
ACAAGGAGGCGCAGCGGCTGGAAAAGGAGCAGAAGAAGAAGGAGGAGCTG
GATCGGTACAGGGAGTCGCACGGAGGGCCGGTGTCGAGTGTGGCGGGGGG
AGGGAAGGAGGGAGGAGGAGGTGGAAATTTCTTGCCTCGAGCGTCCGGGA
TGGGCGCGAGCAAGACCCCAAAGAAGGGGGGGGCAGGGAGCGGGGGAGGG
AGCGGGGGAGGGACCGGCGGAGGGACCGGGGGAGGAGGCGGCCCCATGTC
GGCGAAGAAGGGAGGGAGTACGTGCACGTTTGGAGGAGGAAGCAGCCGAG
GGATTGAGACCCCGGGCAAGGCCCGTCGGCCCGGGCAGGTAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGGCCTAAGACGCCGGGGGCAGGGGTTAG
AAAGGCAGTGGCCGCTGCTGTGGGGGCCAGGGCGGGGGGGAAGGTGGGAG
GGGATGACCAGGAGACGGCTAGCACATGCAGTGGGCCGAGGTCAGAGGCA
TCTTCCGTGTCGTCCTCCTTCTCGTCCTTGTCGTGAATGCTACGGCCCAT
TTTCAAGCTGATTGCCAAGCGGGAGGAGTTCCTGCAAGAGCGCAAAGAGA
TGGAGGAGCTCCAGAAAGACAGCAAGACTCGGCTGACGGATCGCGGGGGT
AAGCGCATCGAGGAGCTGATGCGTATCGAGAAGATGGACAAGCACGTGAA
GAAGGACCTGCCCGTCCTGACGGAGAGGCTGAGGAAGCGGTTGGTGGAGT
GGGAGAGGACAAAGGAGGAAGGCGACGGGTCGCCGTTCTTGTTCCGAGGT
GTGTCGTATTTACAGACGATGGACGAGGAGGAGGAGGCCTGGTTGCGGCA
CAAGGAGGCGCAGCGGCTGGAAAAGGAGCAGAAGAAGAAGGAGGAGCTGG
ATCGGTACAGGGAGTCGCACGGAGGGCCGGTGTCGAGTGTGGCGGGGGGA
GGGAAGGAGGGAGGAGGAGGTGGAAATTTCTTGCCTCGAGCGTCCGGGAT
GGGCGCGAGCAAGACCCCAAAGAAGGGGGGGGCAGGGAGCGGGGGAGGGA
GCGGGGGAGGGACCGGCGGAGGGACCGGGGGAGGAGGCGGCCCCATGTCG
GCGAAGAAGGGAGGGAGTACGTGCACGTTTGGAGGAGGAAGCAGCCGAGG
GATTGAGACCCCGGGCAAGGCCCGTCGGCCCGGGCAGGTAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGGCCTAAGACGCCGGGGGCAGGGGTTAGA
AAGGCAGTGGCCGCTGCTGTGGGGGCCAGGGCGGGGGGGAAGGTGGGAGG
GGATGACCAGGAGACGGCTAGCACATGCAGTGGGCCGAGGTCAGAGGCAT
CTTCCGTGTCGTCCTCCTTCTCGTCCTTGTCGTGAATGCTACGGCCCATT
TTCAAGCTGATTGCCAAGCGGGAGGAGTTCCTGCAAGAGCGCAAAGAG
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Synonyms
Publications