jgi.p|Nanoce1779_2|386557, mRNA_10940 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|386557
Unique NamemRNA_10940
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1182
Alignment locationscaffold_68:74427..75608 +

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Properties
Property NameValue
TranscriptId386643
TrackFilteredModels2
ProteinId386557
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_68supercontigscaffold_68:74427..75608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|386557gene_10940Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|386557mRNA_10940-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10940CDS_10940Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10940 ID=mRNA_10940|Name=jgi.p|Nanoce1779_2|386557|organism=Nannochloropsis oceanica|type=mRNA|length=1182bp
AAAGCGATTGAGGACAAAAAGAGAGAGAGGATAAATTGAGATAGTGCAGC
TACGCTCCACTTCCTTCTGAAAGTGCAAGGTACCGTAAATGTGACATGAT
ATATGAGGCCAACCCAGGCCGCGATAGCCCCTTCCTCCACACCATTCCTG
CCTGCCAACACGCAACCGCATATAAAGGCATCATATCATATGTATCATAC
CCGTCCTTATGTGTGTGTATGTACATAGTCGAAGACCTCACCTCTTCTTC
AGTCTCGTCTTTCCGGACGGCTGACTTGTCGTTGGCTCCATCCTCCTCTG
CTCCCGGCATGTTCTCTGCCGCCGTCTCCTCCTTCTCTTCACGCGCACGC
TTCCTGGAAGAGCCGACAATGGGCTCGATGGGCGCCTCGGCCTCGGACCT
GAGGTTCGTGATAGCGGGTTGCTCCTTTATCTCCTCTGCCCCAACCGCCG
CCTTGGTGGAGTTTTTGGATCCTCGTGTCCGCACCATGATTGGACACTGG
CAAGAAAGCAAGCTGTGTATCGGGGAAGAGGGCAAGCACGACGAGAGAGT
TCGGTATGTGGTGTACTGCCTTTGTGTATCGAGGCACAGAAGTCTAGAGG
TTGTGATGGTTAAGGCGCATCGCCCGCAATTAATCAATTACAGCAACTCA
CGCTTTCGCTCCCCGCACCATCAACCCAACACAGGGATAACACGGAGGAG
TAAGTTTATGATGACAAAGAGAAAGAGGCACGATTTTATGGGACGCCGCA
GCAGCAGCAACTCAAGCAATCTTCTTATTGCTTCAGGCGCCTGCGCCGGC
CCGTGGTGCTGCATGCTGCCGCGGGCATATCGTGGTATACACAAATGGTG
CACTGGTGCTCGGGCCGTAGTGTGCACCAGTGGTGCAGTGGTGCTCTGAG
GGCTAAAAGAGTCCGCCTGTCCTGCAATGCGTCGCTATTTTGTTGCCGGA
GCGTGCTAAGTGTAGCATATCTGCATACTTGCCTCATTCTCTCTTCCATC
GAACGCTCTAACTTCTGTCCCATCCCTCCCTCCAACTGCTTTTGCAGCCC
GCTTCCAAACGCCAGCACTTACGGGCGGAATAGGACACGCGTATGCTTAT
TTTGCCGGTCCATTCAGAGTTTCGAATGTACGAGACCGTCACACTCCGTG
ATGCGCCGCACTGTCGGTCGCTCGTCGAGCTC
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protein sequence of jgi.p|Nanoce1779_2|386557

>mRNA_10940-protein ID=mRNA_10940-protein|Name=jgi.p|Nanoce1779_2|386557|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MIYEANPGRDSPFLHTIPACQHATAYKGIISYVSYPSLCVCMYIVEDLTS
SSVSSFRTADLSLAPSSSAPGMFSAAVSSFSSRARFLEEPTMGSMGASAS
DLRFVIAGCSFISSAPTAALVEFLDPRVRTMIGHWQESKLCIGEEGKHDE
RVRYVVYCLCVSRHRSLEVVMVKAHRPQLINYSNSRFRSPHHQPNTGITR
RSKFMMTKRKRHDFMGRRSSSNSSNLLIASGACAGPWCCMLPRAYRGIHK
WCTGARAVVCTSGAVVL*
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mRNA from alignment at scaffold_68:74427..75608+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10940 ID=mRNA_10940|Name=jgi.p|Nanoce1779_2|386557|organism=Nannochloropsis oceanica|type=mRNA|length=1182bp|location=Sequence derived from alignment at scaffold_68:74427..75608+ (Nannochloropsis oceanica)
AAAGCGATTGAGGACAAAAAGAGAGAGAGGATAAATTGAGATAGTGCAGC
TACGCTCCACTTCCTTCTGAAAGTGCAAGGTACCGTAAATGTGACATGAT
ATATGAGGCCAACCCAGGCCGCGATAGCCCCTTCCTCCACACCATTCCTG
CCTGCCAACACGCAACCGCATATAAAGGCATCATATCATATGTATCATAC
CCGTCCTTATGTGTGTGTATGTACATAGTCGAAGACCTCACCTCTTCTTC
AGTCTCGTCTTTCCGGACGGCTGACTTGTCGTTGGCTCCATCCTCCTCTG
CTCCCGGCATGTTCTCTGCCGCCGTCTCCTCCTTCTCTTCACGCGCACGC
TTCCTGGAAGAGCCGACAATGGGCTCGATGGGCGCCTCGGCCTCGGACCT
GAGGTTCGTGATAGCGGGTTGCTCCTTTATCTCCTCTGCCCCAACCGCCG
CCTTGGTGGAGTTTTTGGATCCTCGTGTCCGCACCATGATTGGACACTGG
CAAGAAAGCAAGCTGTGTATCGGGGAAGAGGGCAAGCACGACGAGAGAGT
TCGGTATGTGGTGTACTGCCTTTGTGTATCGAGGCACAGAAGTCTAGAGG
TTGTGATGGTTAAGGCGCATCGCCCGCAATTAATCAATTACAGCAACTCA
CGCTTTCGCTCCCCGCACCATCAACCCAACACAGGGATAACACGGAGGAG
TAAGTTTATGATGACAAAGAGAAAGAGGCACGATTTTATGGGACGCCGCA
GCAGCAGCAACTCAAGCAATCTTCTTATTGCTTCAGGCGCCTGCGCCGGC
CCGTGGTGCTGCATGCTGCCGCGGGCATATCGTGGTATACACAAATGGTG
CACTGGTGCTCGGGCCGTAGTGTGCACCAGTGGTGCAGTGGTGCTCTGAG
GGCTAAAAGAGTCCGCCTGTCCTGCAATGCGTCGCTATTTTGTTGCCGGA
GCGTGCTAAGTGTAGCATATCTGCATACTTGCCTCATTCTCTCTTCCATC
GAACGCTCTAACTTCTGTCCCATCCCTCCCTCCAACTGCTTTTGCAGCCC
GCTTCCAAACGCCAGCACTTACGGGCGGAATAGGACACGCGTATGCTTAT
TTTGCCGGTCCATTCAGAGTTTCGAATGTACGAGACCGTCACACTCCGTG
ATGCGCCGCACTGTCGGTCGCTCGTCGAGCTC
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Coding sequence (CDS) from alignment at scaffold_68:74427..75608+

>mRNA_10940 ID=mRNA_10940|Name=jgi.p|Nanoce1779_2|386557|organism=Nannochloropsis oceanica|type=CDS|length=804bp|location=Sequence derived from alignment at scaffold_68:74427..75608+ (Nannochloropsis oceanica)
ATGATATATGAGGCCAACCCAGGCCGCGATAGCCCCTTCCTCCACACCAT
TCCTGCCTGCCAACACGCAACCGCATATAAAGGCATCATATCATATGTAT
CATACCCGTCCTTATGTGTGTGTATGTACATAGTCGAAGACCTCACCTCT
TCTTCAGTCTCGTCTTTCCGGACGGCTGACTTGTCGTTGGCTCCATCCTC
CTCTGCTCCCGGCATGTTCTCTGCCGCCGTCTCCTCCTTCTCTTCACGCG
CACGCTTCCTGGAAGAGCCGACAATGGGCTCGATGGGCGCCTCGGCCTCG
GACCTGAGGTTCGTGATAGCGGGTTGCTCCTTTATCTCCTCTGCCCCAAC
CGCCGCCTTGGTGGAGTTTTTGGATCCTCGTGTCCGCACCATGATTGGAC
ACTGGCAAGAAAGCAAGCTGTGTATCGGGGAAGAGGGCAAGCACGACGAG
AGAGTTCGGTATGTGGTGTACTGCCTTTGTGTATCGAGGCACAGAAGTCT
AGAGGTTGTGATGGTTAAGGCGCATCGCCCGCAATTAATCAATTACAGCA
ACTCACGCTTTCGCTCCCCGCACCATCAACCCAACACAGGGATAACACGG
AGGAGTAAGTTTATGATGACAAAGAGAAAGAGGCACGATTTTATGGGACG
CCGCAGCAGCAGCAACTCAAGCAATCTTCTTATTGCTTCAGGCGCCTGCG
CCGGCCCGTGGTGCTGCATGCTGCCGCGGGCATATCGTGGTATACACAAA
TGGTGCACTGGTGCTCGGGCCGTAGTGTGCACCAGTGGTGCAGTGGTGCT
CTGA
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Synonyms
Publications