jgi.p|Nanoce1779_2|584195, mRNA_3016 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584195
Unique NamemRNA_3016
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length860
Alignment locationscaffold_7:468116..468975 +

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Properties
Property NameValue
TranscriptId584281
TrackFilteredModels2
ProteinId584195
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:468116..468975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584195gene_3016Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584195mRNA_3016-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3016CDS_3016Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3016 ID=mRNA_3016|Name=jgi.p|Nanoce1779_2|584195|organism=Nannochloropsis oceanica|type=mRNA|length=860bp
ACAGGCCGTGAAAGCCCCACAATGAAGCAATTTCCCGCAGTGCGGTTGCT
GGCCAGCCTCTTGGAAAGCCTCAATCCCGAGCTCCCCTTCGATGCCAGTG
ATCCCAAGGGAGATGAATACTTGAGCAGATGGCACTCATCACCAACCCAG
CATGCCGCTGAACTCATTGTGTCGTTTCTCCTCTTCAGTCCTTTGCTGTA
TGTGGCCTGGCGTAATATGCAAAAACAAATGCGTGCTTTGCGGATAACCT
ATACCCCCACGAAAGGGCAGGTGTTGTGGAGCTTTGGTCTTATCATGACG
CTTCTTTTGCAGGTGCCTCTCAAGCTAGATGTCACCAACATCTCCTCCCA
CCCTGCTTACTTTTTGCAGCCCTGCCACGTCACCACCATCCTTTATTTTA
TTTGCACCGTTGTCCCGTCGGAAACCTCCTTTATCTGCTTTCATGCACTA
AGTCTTCTGACCTGGGGGCCGTCGCTTGCGTTCTGCTTTCCGAATCTGCC
TGCAACTCGTCTCGAGGTCACCTTCTTCTATCTACAACACATTTTCCTCT
GTACTGCGCCAATTTTTGCGGTAAACAAAACCCACCGACTCCTGTACAAG
AGCTGGTCGTGGAACTACTTTTCGTTCGTGGTCCTGTCCGCATATCACTG
GTGGCTGTTGCTTCCGTGGGCAATCAAAAGCGGTATAAACGTTGCGACCA
TGACCTCCCCTCCTCCCGCCCTCATACCCTTTGGGCGCTGCTACCGTTTT
GTACAGGGGTTGGCATGTCTTGTGCTTCATAGCCTGAGTATCGGTGTCCA
TCTAGCGTTGAGTGCCTTGATGCAACGTATGGCCAAGAGGAAGGGTGCGT
AAAATAATAA
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protein sequence of jgi.p|Nanoce1779_2|584195

>mRNA_3016-protein ID=mRNA_3016-protein|Name=jgi.p|Nanoce1779_2|584195|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MKQFPAVRLLASLLESLNPELPFDASDPKGDEYLSRWHSSPTQHAAELIV
SFLLFSPLLYVAWRNMQKQMRALRITYTPTKGQVLWSFGLIMTLLLQVPL
KLDVTNISSHPAYFLQPCHVTTILYFICTVVPSETSFICFHALSLLTWGP
SLAFCFPNLPATRLEVTFFYLQHIFLCTAPIFAVNKTHRLLYKSWSWNYF
SFVVLSAYHWWLLLPWAIKSGINVATMTSPPPALIPFGRCYRFVQGLACL
VLHSLSIGVHLALSALMQRMAKRKGA*
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mRNA from alignment at scaffold_7:468116..468975+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3016 ID=mRNA_3016|Name=jgi.p|Nanoce1779_2|584195|organism=Nannochloropsis oceanica|type=mRNA|length=860bp|location=Sequence derived from alignment at scaffold_7:468116..468975+ (Nannochloropsis oceanica)
ACAGGCCGTGAAAGCCCCACAATGAAGCAATTTCCCGCAGTGCGGTTGCT
GGCCAGCCTCTTGGAAAGCCTCAATCCCGAGCTCCCCTTCGATGCCAGTG
ATCCCAAGGGAGATGAATACTTGAGCAGATGGCACTCATCACCAACCCAG
CATGCCGCTGAACTCATTGTGTCGTTTCTCCTCTTCAGTCCTTTGCTGTA
TGTGGCCTGGCGTAATATGCAAAAACAAATGCGTGCTTTGCGGATAACCT
ATACCCCCACGAAAGGGCAGGTGTTGTGGAGCTTTGGTCTTATCATGACG
CTTCTTTTGCAGGTGCCTCTCAAGCTAGATGTCACCAACATCTCCTCCCA
CCCTGCTTACTTTTTGCAGCCCTGCCACGTCACCACCATCCTTTATTTTA
TTTGCACCGTTGTCCCGTCGGAAACCTCCTTTATCTGCTTTCATGCACTA
AGTCTTCTGACCTGGGGGCCGTCGCTTGCGTTCTGCTTTCCGAATCTGCC
TGCAACTCGTCTCGAGGTCACCTTCTTCTATCTACAACACATTTTCCTCT
GTACTGCGCCAATTTTTGCGGTAAACAAAACCCACCGACTCCTGTACAAG
AGCTGGTCGTGGAACTACTTTTCGTTCGTGGTCCTGTCCGCATATCACTG
GTGGCTGTTGCTTCCGTGGGCAATCAAAAGCGGTATAAACGTTGCGACCA
TGACCTCCCCTCCTCCCGCCCTCATACCCTTTGGGCGCTGCTACCGTTTT
GTACAGGGGTTGGCATGTCTTGTGCTTCATAGCCTGAGTATCGGTGTCCA
TCTAGCGTTGAGTGCCTTGATGCAACGTATGGCCAAGAGGAAGGGTGCGT
AAAATAATAA
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Coding sequence (CDS) from alignment at scaffold_7:468116..468975+

>mRNA_3016 ID=mRNA_3016|Name=jgi.p|Nanoce1779_2|584195|organism=Nannochloropsis oceanica|type=CDS|length=831bp|location=Sequence derived from alignment at scaffold_7:468116..468975+ (Nannochloropsis oceanica)
ATGAAGCAATTTCCCGCAGTGCGGTTGCTGGCCAGCCTCTTGGAAAGCCT
CAATCCCGAGCTCCCCTTCGATGCCAGTGATCCCAAGGGAGATGAATACT
TGAGCAGATGGCACTCATCACCAACCCAGCATGCCGCTGAACTCATTGTG
TCGTTTCTCCTCTTCAGTCCTTTGCTGTATGTGGCCTGGCGTAATATGCA
AAAACAAATGCGTGCTTTGCGGATAACCTATACCCCCACGAAAGGGCAGG
TGTTGTGGAGCTTTGGTCTTATCATGACGCTTCTTTTGCAGGTGCCTCTC
AAGCTAGATGTCACCAACATCTCCTCCCACCCTGCTTACTTTTTGCAGCC
CTGCCACGTCACCACCATCCTTTATTTTATTTGCACCGTTGTCCCGTCGG
AAACCTCCTTTATCTGCTTTCATGCACTAAGTCTTCTGACCTGGGGGCCG
TCGCTTGCGTTCTGCTTTCCGAATCTGCCTGCAACTCGTCTCGAGGTCAC
CTTCTTCTATCTACAACACATTTTCCTCTGTACTGCGCCAATTTTTGCGG
TAAACAAAACCCACCGACTCCTGTACAAGAGCTGGTCGTGGAACTACTTT
TCGTTCGTGGTCCTGTCCGCATATCACTGGTGGCTGTTGCTTCCGTGGGC
AATCAAAAGCGGTATAAACGTTGCGACCATGACCTCCCCTCCTCCCGCCC
TCATACCCTTTGGGCGCTGCTACCGTTTTGTACAGGGGTTGGCATGTCTT
GTGCTTCATAGCCTGAGTATCGGTGTCCATCTAGCGTTGAGTGCCTTGAT
GCAACGTATGGCCAAGAGGAAGGGTGCGTAA
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Synonyms
Publications