jgi.p|Nanoce1779_2|585077, mRNA_3252 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585077
Unique Name	mRNA_3252
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2695
Alignment location	scaffold_7:1015323..1018240 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585163
Track	FilteredModels2
ProteinId	585077

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:1015323..1018240 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585077	gene_3252	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585077	mRNA_3252-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3252	CDS_3252	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:1015323..1018240+
coding sequence from alignment at scaffold_7:1015323..1018240+

mRNA sequence

>mRNA_3252 ID=mRNA_3252|Name=jgi.p|Nanoce1779_2|585077|organism=Nannochloropsis oceanica|type=mRNA|length=2695bp
CTCCCCTACACCGCGGTTCCCTCTCCCACCCGCGACGTGGAGTGTGTTGT
GTGTCATCTGATCCAAGACGCTTGCGCTAGCCACGCGTATGGACAAATCG
TGCAATATACCTTGTAATTCTATCTCAGCCTGCTGCTCGATCGAAGTCGA
GCACGGAAAGGACGACGACGTAGAGGACACAGCGGAAGACGAACAAAGAA
TGGCGCAGCAATGCGGGCGCTGTTGGTTGTAAACGACGGTGCGAAGGAGG
TGGATGGGGAGGAGGGCGTCCCGTGCCTCGGCAGGGAGGGACTGAAACCA
AGAAATGACAGGCTTGAGCTCACCCACATTCACCCCCGGTAGATCCGCCA
ACCCCTTACTTGCCCACAGACGAGTTGCTTGGTACCGTCGGCGTCGCTTC
CGCTCTTCCTTGTCCTGCTGGTGCTGCTGGTGCTGCGGTTGGTCCTCCTC
CTGCCATTCCGGATGGAGGTCCTCAGCAGCCAGCACCTCCGAAAAGCACA
ATAACAAGCGGCGCAGCATTCCCCCCTCCTTCCGTTCGATTGCGTCTCGA
AAAGTCACTTCTCGCGCCAACCCTGCTAAGAGCCGCATCATCCCTGGTGG
GGTAGTCAGCTCCCCCGTAGCGTACTCCTGCAATACGTTCGCCTCCATCC
ACTGCAGAGACTGCACACTCGCCAGCAGCACCAAGGCGCGGACAAGCTCC
TCTGTCTCCGCTTCCTTTTTCGCCTTCTTCCCTTCTTCTTCAACCTCCTC
TTCCTCCACTTCATCGTCCTCGTCCTCGTCCATGAGTAACAATTTGGCCT
TGAATTCTTCCGCGAGCTCCTCCGGAGCCTCCACCCCGTCGTCATCCGCG
TCCTTGTTTTTCCTCTCCCTCCCCATCACATACCGGGAAAACCCCTCATA
GGCCATCTCAGCCACCCATGCCTTGGCCTCCGTCTCCCCGTCGACACCAC
AAGTAGCGGCAGCAGAAGCAATATCAGTGGCAGCTGTAGCAGTACTATCA
GCAACAGCCAAAGTCATGGGGACAGCGGCCGCAGCCGATGAGGAGGAGGA
GGAAGAAGGCAACTTTCTACTGCCGCTGCTACTGCTACTCCCACCTTTCA
GGGTATCCCGCTGGTGCTTGTACGCCTCATGAAAACAAACCAGCAGGGCC
CTCGCCATCACCCCCTCCTTCTCCCCCAACACCGCCGGCCACAGATGGAA
GAACGCAGCTAACGGTCCCAGTGACGCCAGCTTTCCGTTCAACAGAAAGA
TGTCATACACCAATGCGCGGACTCTCTGTAGCAGCCTGAGCTCTTTACAC
AAACAGGTAAACAATGCAGCAGCCGCAAACCCATCACGTTGCCGGCGGAA
AGCAAATTCTTTCTCCCTCTCCCTCTCATGATCCGTTTCTGTCTGTGACT
TTCGCCCTTGCCGGTGACCGCCGCTGATATCGCCATCCTCCTTCCCTTCC
TTCTGCTCCTTATCCTCTTCCTGCTTTTCCTCCTCTTCCTCGTCTTGCTC
CTTTTCCTCCTCTTCCTTCTCCTCCTCAATACCCCCGTCCCCGCCCTCCT
TCCCTCCCTCCGCTACCTCCCCCTTTGCTGGCTTGTACAACTGCTGCAGC
AATTCATCCAGTATCAACTCCACAAAATAGGCTCCGTAATCTTTCTCTTC
ACACAACCGCAATACTACCCCCGCAGCCAGCCCCACCAGCCTCCCCGCCT
CGCTATTCTTGTATACTGGGTCCTGCAACCAATACCCCTCCCTGTCCCTC
CTCAGCGCTTGAGACATCTTCCTCTTGTAAGTGACCAAAATCCGATGACA
AGCCATCTGCGGCGCAATGTGTGCCGCCTCCCGTAACAGTAAAACCATGC
GCTCCACGCCCATATTCATTTTGTCCTCCGTCAACGATGGCAACTCCCGA
CAAAACACATAACGATCCAACGCCAGTTGAGTAAACTTCGATTCAGCGAA
CGGACGGTCCTTCACCATGCCCCATAACAAAGCTACTTCCTCTAGGATGG
TCGATGTCCCTCCTTCCCCCTCCTGACCTTGTCTTCCTTTTCGTCCTCCT
GGCTCTTCTCCAAATTCTTCTTCCTTCTCTTCCTCCTCTTCCTCATCTCG
CTCTTCTTCTTCTTGCTCTCCGTCCCCATCGCCTTCGTGCTGATCTTTGA
CTGCAGCCTCAACGGTTTGCTCTTCTCGTTCCTTATCTGCTTCCTTCTGC
TTCTCTTTCTTGGCAATACTGGTAGTAGGGGTGCTTTGGGAAGCGCTTAT
GCTTTTGGTGGTGGCAGCCTCTCGTTGACTGCTCTTACTCGTACTTTTCT
TGAGACTCAAAATATCGGTGGCTTTGAAACTCTTGGTTAATTCTTGCTCT
TGTGGATTTGTGGGAGGCTTCGTTGCCGCCTTGGCTTTCTTGTTGCCGCT
GCCCCCTCTGCCGCCGCAACCATCGCCCTCCACATCCATGGCCCTATTTC
CATCACAAGCATCGTCGCGGTCCGCACGTTTCCGCTTGCCAGGGACCGGC
AGACCATGCGCCTCGAGCGTGTCCTCGAGTTCTTCTACCCGCTCTTCTGT
GGCGGCCAGCTTGCTTTCTAAGTCAGCAATGTGCTCCTTTTGGGACTTGA
TAGTCTTGACGGCGTTGGCCATGGCGGCCTTGTACCGCTCTTCGTTGGTA
CCCGCCATCGTCTTTGGTAATGTGCGGGCTGGGTGTTGTCTGTTG

protein sequence of jgi.p|Nanoce1779_2|585077

>mRNA_3252-protein ID=mRNA_3252-protein|Name=jgi.p|Nanoce1779_2|585077|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MTGLSSPTFTPGRSANPLLAHRRVAWYRRRRFRSSLSCWCCWCCGWSSSC
HSGWRSSAASTSEKHNNKRRSIPPSFRSIASRKVTSRANPAKSRIIPGGV
VSSPVAYSCNTFASIHCRDCTLASSTKARTSSSVSASFFAFFPSSSTSSS
STSSSSSSSMSNNLALNSSASSSGASTPSSSASLFFLSLPITYRENPS*

mRNA from alignment at scaffold_7:1015323..1018240+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3252 ID=mRNA_3252|Name=jgi.p|Nanoce1779_2|585077|organism=Nannochloropsis oceanica|type=mRNA|length=2918bp|location=Sequence derived from alignment at scaffold_7:1015323..1018240+ (Nannochloropsis oceanica)
CTCCCCTACACCGCGGTTCCCTCTCCCACCCGCGACGTGGAGTGTGTTGT
GTGTCATCTGATCCAAGACGCTTGCGCTAGCCACGCGTATGGACAAATCG
TGCAATATACCTTGTAATTCTATCTCAGCCTGCTGCTCGATCGAAGTCGA
GCACGGAAAGGACGACGACGTAGAGGACACAGCGGAAGACGAACAAAGAA
TGGCGCAGCAATGCGGGCGCTGTTGGTTGTAAACGACGGTGCGAAGGAGG
TGGATGGGGAGGAGGGCGTCCCGTGCCTCGGCAGGGAGGGACTGAAACCA
AGAAATGACAGGCTTGAGCTCACCCACATTCACCCCCGGTAGATCCGCCA
ACCCCTTACTTGCCCACAGACGAGTTGCTTGGTACCGTCGGCGTCGCTTC
CGCTCTTCCTTGTCCTGCTGGTGCTGCTGGTGCTGCGGTTGGTCCTCCTC
CTGCCATTCCGGATGGAGGTCCTCAGCAGCCAGCACCTCCGAAAAGCACA
ATAACAAGCGGCGCAGCATTCCCCCCTCCTTCCGTTCGATTGCGTCTCGA
AAAGTCACTTCTCGCGCCAACCCTGCTAAGAGCCGCATCATCCCTGGTGG
GGTAGTCAGCTCCCCCGTAGCGTACTCCTGCAATACGTTCGCCTCCATCC
ACTGCAGAGACTGCACACTCGCCAGCAGCACCAAGGCGCGGACAAGCTCC
TCTGTCTCCGCTTCCTTTTTCGCCTTCTTCCCTTCTTCTTCAACCTCCTC
TTCCTCCACTTCATCGTCCTCGTCCTCGTCCATGAGTAACAATTTGGCCT
TGAATTCTTCCGCGAGCTCCTCCGGAGCCTCCACCCCGTCGTCATCCGCG
TCCTTGTTTTTCCTCTCCCTCCCCATCACATACCGGGAAAACCCCTCATA
GGCCATCTCAGCCACCCATGCCTTGGCCTCCGTCTCCCCGTCGACACCAC
AAGTAGCGGCAGCAGAAGCAATATCAGTGGCAGCTGTAGCAGTACTATCA
GCAACAGCCAAAGTCATGGGGACAGCGGCCGCAGCCGATGAGGAGGAGGA
GGAAGAAGGCAACTTTCTACTGCCGCTGCTACTGCTACTCCCACCTTTCA
GGGTATCCCGCTGGTGCTTGTACGCCTCATGAAAACAAACCAGCAGGGCC
CTCGCCATCACCCCCTCCTTCTCCCCCAACACCGCCGGCCACAGATGGAA
GAACGCAGCTAACGGTCCCAGTGACGCCAGCTTTCCGTTCAACAGAAAGA
TGTCATACACCAATGCGCGGACTCTCTGTAGCAGCCTGAGCTCTTTACAC
AAACAGGTAAACAATGCAGCAGCCGCAAACCCATCACGTTGCCGGCGGAA
AGCAAATTCTTTCTCCCTCTCCCTCTCATGATCCGTTTCTGTCTGTGACT
TTCGCCCTTGCCGGTGACCGCCGCTGATATCGCCATCCTCCTTCCCTTCC
TTCTGCTCCTTATCCTCTTCCTGCTTTTCCTCCTCTTCCTCGTCTTGCTC
CTTTTCCTCCTCTTCCTTCTCCTCCTCAATACCCCCGTCCCCGCCCTCCT
TCCCTCCCTCCGCTACCTCCCCCTTTGCTGGCTTGTACAACTGCTGCAGC
AATTCATCCAGTATCAACTCCACAAAATAGGCTCCGTAATCTTTCTCTTC
ACACAACCGCAATACTACCCCCGCAGCCAGCCCCACCAGCCTCCCCGCCT
CGCTATTCTTGTATACTGGGTCCTGCAACCAATACCCCTCCCTGTCCCTC
CTCAGCGCTTGAGACATCTTCCTCTTGTAAGTGACCAAAATCCGATGACA
AGCCATCTGCGGCGCAATGTGTGCCGCCTCCCGTAACAGTAAAACCATGC
GCTCCACGCCCATATTCATTTTGTCCTCCGTCAACGATGGCAACTCCCGA
CAAAACACATAACGATCCAACGCCAGTTGAGTAAACTTCGATTCAGCGAA
CGGACGGTCCTTCACCATGCCCCATAACAAAGCTACTTCCTCTAGGATGG
TCGATGTCCCTCCTTCCCCCTCCTGACCTTGTCTTCCTTTTCGTCCTCCT
GGCTCTTCTCCAAATTCTTCTTCCTTCTCTTCCTCCTCTTCCTCATCTCG
CTCTTCTTCTTCTTGCTCTCCGTCCCCATCGCCTTCGTGCTGATCTTTGA
CTGCAGCCTCAACGGTTTGCTCTTCTCGTTCCTTATCTGCTTCCTTCTGC
TTCTCTTTCTTGGCAATACTGGTAGTAGGGGTGCTTTGGGAAGCGCTTAT
GCTTTTGGTGGTGGCAGCCTCTCGTTGACTGCTCTTACTCGTACTTTTCT
TGAGACTCAAAATATCGGTGGCTTTGAAACTCTTGGTTAATTCTTGCTCT
TGTGGATTCTGTGTGGAAGGACGGGAGAGAAGGAGGGTGGGTGGGAGGAA
GGGCGTGAGTCGTCCTCCGTTGTCCGACAGATAGTGGGCAAGGAGGTAGG
GAGGAGAGGACAAAGAGACGACAAGAGAAGAATTCGTGGGGAGAAACCAT
TGGGGATCAGCATACGCTCGGGACTGTAAACATCACACATTCAAGCCGTA
CACACTGATACAGAGGAAGAGACTGACATACTGTGGGAGGCTTCGTTGCC
GCCTTGGCTTTCTTGTTGCCGCTGCCCCCTCTGCCGCCGCAACCATCGCC
CTCCACATCCATGGCCCTATTTCCATCACAAGCATCGTCGCGGTCCGCAC
GTTTCCGCTTGCCAGGGACCGGCAGACCATGCGCCTCGAGCGTGTCCTCG
AGTTCTTCTACCCGCTCTTCTGTGGCGGCCAGCTTGCTTTCTAAGTCAGC
AATGTGCTCCTTTTGGGACTTGATAGTCTTGACGGCGTTGGCCATGGCGG
CCTTGTACCGCTCTTCGTTGGTACCCGCCATCGTCTTTGGTAATGTGCGG
GCTGGGTGTTGTCTGTTG

Coding sequence (CDS) from alignment at scaffold_7:1015323..1018240+

>mRNA_3252 ID=mRNA_3252|Name=jgi.p|Nanoce1779_2|585077|organism=Nannochloropsis oceanica|type=CDS|length=597bp|location=Sequence derived from alignment at scaffold_7:1015323..1018240+ (Nannochloropsis oceanica)
ATGACAGGCTTGAGCTCACCCACATTCACCCCCGGTAGATCCGCCAACCC
CTTACTTGCCCACAGACGAGTTGCTTGGTACCGTCGGCGTCGCTTCCGCT
CTTCCTTGTCCTGCTGGTGCTGCTGGTGCTGCGGTTGGTCCTCCTCCTGC
CATTCCGGATGGAGGTCCTCAGCAGCCAGCACCTCCGAAAAGCACAATAA
CAAGCGGCGCAGCATTCCCCCCTCCTTCCGTTCGATTGCGTCTCGAAAAG
TCACTTCTCGCGCCAACCCTGCTAAGAGCCGCATCATCCCTGGTGGGGTA
GTCAGCTCCCCCGTAGCGTACTCCTGCAATACGTTCGCCTCCATCCACTG
CAGAGACTGCACACTCGCCAGCAGCACCAAGGCGCGGACAAGCTCCTCTG
TCTCCGCTTCCTTTTTCGCCTTCTTCCCTTCTTCTTCAACCTCCTCTTCC
TCCACTTCATCGTCCTCGTCCTCGTCCATGAGTAACAATTTGGCCTTGAA
TTCTTCCGCGAGCTCCTCCGGAGCCTCCACCCCGTCGTCATCCGCGTCCT
TGTTTTTCCTCTCCCTCCCCATCACATACCGGGAAAACCCCTCATAG

Synonyms

Publications