jgi.p|Nanoce1779_2|585192, mRNA_3282 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585192
Unique NamemRNA_3282
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length725
Alignment locationscaffold_7:1101795..1102519 -

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Properties
Property NameValue
TranscriptId585278
TrackFilteredModels2
ProteinId585192
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1101795..1102519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585192gene_3282Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585192mRNA_3282-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3282CDS_3282Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3282 ID=mRNA_3282|Name=jgi.p|Nanoce1779_2|585192|organism=Nannochloropsis oceanica|type=mRNA|length=725bp
TCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
TTCCCTCTTTCTCTCCTCTTTATTTTCTTCTCGCCCTCCTTTTTCCTCCT
CAGTCTCCTATTCCACATTAAATACTGCTTCTACAACTGCTCGTCAACTC
CTCTGCACCCTTTTCCCCATACTCCTCCTCCCCTTGTCTTCTGCCCAAGC
CTTTCCGGGCCTCGAAGACTGCACCAGCGAGTCCAATCCTTCCTTCACCA
TCGTCACATGTGCCCGCTCCGGTATCGATCCAGTCACCTCACGCCCCCAA
AAATGTCTATCGGCCGAAAACTGTATCAGCAGCAGCAGTGTCCAATCTGC
GAGCAAGTACATGTCTCCCTGGGTGTACGGTGGTGCTGCTGCTGACACCC
CGTCAGCATGGCTCTCCCTCGTTCGTGCCGTCGAAGCCCAAGAGGGGGTG
AAGCTCGTGGAGGTTGACAACGGGAGCAAGCAATACTACCTGAGAGCAGA
GGTGGGGAGTAAAGTGCCCCCGGGCGGGATTGACGATATCGAATTCTTGA
TGTCGCCGAAGGATGGCTTGGTGTTCTTTCGGTCAGCGTCGCGGCAGATG
GCGTTTTTGTACCCGTTGACCCAACCCGTAGGGGACGGAGGTTCGATAAA
AAAAAGGATAGAAGCGATCCAGAAGGTGGTGGGGTGGTCAACGGTGGAGG
ATTACTACGCGTTTGACTAGGGGAG
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protein sequence of jgi.p|Nanoce1779_2|585192

>mRNA_3282-protein ID=mRNA_3282-protein|Name=jgi.p|Nanoce1779_2|585192|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MSPWVYGGAAADTPSAWLSLVRAVEAQEGVKLVEVDNGSKQYYLRAEVGS
KVPPGGIDDIEFLMSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRI
EAIQKVVGWSTVEDYYAF
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mRNA from alignment at scaffold_7:1101795..1102519-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3282 ID=mRNA_3282|Name=jgi.p|Nanoce1779_2|585192|organism=Nannochloropsis oceanica|type=mRNA|length=725bp|location=Sequence derived from alignment at scaffold_7:1101795..1102519- (Nannochloropsis oceanica)
TCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
TTCCCTCTTTCTCTCCTCTTTATTTTCTTCTCGCCCTCCTTTTTCCTCCT
CAGTCTCCTATTCCACATTAAATACTGCTTCTACAACTGCTCGTCAACTC
CTCTGCACCCTTTTCCCCATACTCCTCCTCCCCTTGTCTTCTGCCCAAGC
CTTTCCGGGCCTCGAAGACTGCACCAGCGAGTCCAATCCTTCCTTCACCA
TCGTCACATGTGCCCGCTCCGGTATCGATCCAGTCACCTCACGCCCCCAA
AAATGTCTATCGGCCGAAAACTGTATCAGCAGCAGCAGTGTCCAATCTGC
GAGCAAGTACATGTCTCCCTGGGTGTACGGTGGTGCTGCTGCTGACACCC
CGTCAGCATGGCTCTCCCTCGTTCGTGCCGTCGAAGCCCAAGAGGGGGTG
AAGCTCGTGGAGGTTGACAACGGGAGCAAGCAATACTACCTGAGAGCAGA
GGTGGGGAGTAAAGTGCCCCCGGGCGGGATTGACGATATCGAATTCTTGA
TGTCGCCGAAGGATGGCTTGGTGTTCTTTCGGTCAGCGTCGCGGCAGATG
GCGTTTTTGTACCCGTTGACCCAACCCGTAGGGGACGGAGGTTCGATAAA
AAAAAGGATAGAAGCGATCCAGAAGGTGGTGGGGTGGTCAACGGTGGAGG
ATTACTACGCGTTTGACTAGGGGAG
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Coding sequence (CDS) from alignment at scaffold_7:1101795..1102519-

>mRNA_3282 ID=mRNA_3282|Name=jgi.p|Nanoce1779_2|585192|organism=Nannochloropsis oceanica|type=CDS|length=356bp|location=Sequence derived from alignment at scaffold_7:1101795..1102519- (Nannochloropsis oceanica)
ATGTCTCCCTGGGTGTACGGTGGTGCTGCTGCTGACACCCCGTCAGCATG
GCTCTCCCTCGTTCGTGCCGTCGAAGCCCAAGAGGGGGTGAAGCTCGTGG
AGGTTGACAACGGGAGCAAGCAATACTACCTGAGAGCAGAGGTGGGGAGT
AAAGTGCCCCCGGGCGGGATTGACGATATCGAATTCTTGATGTCGCCGAA
GGATGGCTTGGTGTTCTTTCGGTCAGCGTCGCGGCAGATGGCGTTTTTGT
ACCCGTTGACCCAACCCGTAGGGGACGGAGGTTCGATAAAAAAAAGGATA
GAAGCGATCCAGAAGGTGGTGGGGTGGTCAACGGTGGAGGATTACTACGC
GTTTGA
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Synonyms
Publications