jgi.p|Nanoce1779_2|669960, mRNA_3182 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|669960
Unique NamemRNA_3182
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1335
Alignment locationscaffold_7:864124..865580 -

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Properties
Property NameValue
TranscriptId670046
TrackFilteredModels2
ProteinId669960
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:864124..865580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669960gene_3182Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669960mRNA_3182-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3182CDS_3182Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3182 ID=mRNA_3182|Name=jgi.p|Nanoce1779_2|669960|organism=Nannochloropsis oceanica|type=mRNA|length=1335bp
TTTCATTCGAAGAACCTCGTGGTGTGGTGTAGCTTGTGGGGGGGGAGGGG
GGAGGTCGACGAATGACGAAGGCCGTTGCACGCGGCAGCTCTTGCATCGC
CCCCTTTGCCTGGTCCAGACCCCCCACTGATCCCTGTCATTTACGAACCA
CCGTCACCAAAATACACACAGCACGTGAGATCTTTTTTGGGTTTCCTTTC
AGATTGCTTGTGGAGCTGAAAGCACCGCCAACCCCCAGCAGTCTCGCATT
TATCCTCCCTCGCCACTCGCTCCCAAGCGCTCACTAAAACACTACTTGCT
TTATAAGCCACGACTATGCTAGTCAAGGGCTACAATGTCTTAGCAGTGCC
CTTGGGTGAGGATACGTCTAGCCCCTTCTCTTCCTTCCTCTACGTCCGTC
AGCATTCGAGCAAAAGCGGCGAAGACTTACCCCAAGGAAGGACACTTTTT
CTGGCCAACGTCCCCGCGCGGACGGGCGTGGACATCGGGACCTACTTGAG
AGAGGCGTTTGCCCGGTACGGGGAAGTTGAAGAGGTTCGTGTCAAGGACC
ACCCTGACGACGAAATCGCCGTCTCTTTAACAAGCAAATGTGCCATTGGA
TTTATCGTGTTTCGAACTAGCAAAGGTCTTAAGGCCGTGATGAGCGCCAG
CGGCGATGCTTCCCGTCTATCACCGCCGTCGAGGAGCGTGCTTTTGCCTG
GGTACAAACCTTCCAAACGACAACTCAAGAAGCAGCAGCAGCAGCAGCAA
GAGCAGCAGCAAGAGAGAAGAAAAGAGGATGACAAGGAAATTATCGACGA
TGAAGTGCAAAAACTGATACGGCGCTTCAGAGCGAGATTGCCACAGGGCA
AGGTCTTGCAAGAGGAGGTGGATGGCTACATGGCCTCATTCGAGGCCGCC
GAGGCAGAGGAGAAGAGAAAAAGGTTCGCAGCAGCGACAACACCGGATGC
CGATGGATTTGTCACCGTGTCGTACGGCAAGAAACGTCGGCGGGGAGGTG
CAGGAGGAGCAAAGAACGAGGCAAATGGGGGGAAGAAAAGGAGTAGGTCG
GGAAGTCACAAGAAGAAAAAGAAGGAGACGGAACTGAAGAATTTTTACGC
GCACCAGATGCGAGAAGCGAAGCGGGAGCAGCTTGCCCGTCTTCGGACTC
GTTTTGAGGAGGACAAGGCGCGAATAGAAAAGATGAAAGCCGCAAGGAAA
TTTAAACCGTTTGGGTAACCAATGGTGTACGCGTGTGTGTGCGTGTGTGT
GTGCATGTATTTGTGGGTCAAAAGGGAAAAGAGAGATAAGTTGATGATGC
AACACAAATGAAATAAAATACACCCAGAGGAGCAA
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protein sequence of jgi.p|Nanoce1779_2|669960

>mRNA_3182-protein ID=mRNA_3182-protein|Name=jgi.p|Nanoce1779_2|669960|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MLVKGYNVLAVPLGEDTSSPFSSFLYVRQHSSKSGEDLPQGRTLFLANVP
ARTGVDIGTYLREAFARYGEVEEVRVKDHPDDEIAVSLTSKCAIGFIVFR
TSKGLKAVMSASGDASRLSPPSRSVLLPGYKPSKRQLKKQQQQQQEQQQE
RRKEDDKEIIDDEVQKLIRRFRARLPQGKVLQEEVDGYMASFEAAEAEEK
RKRFAAATTPDADGFVTVSYGKKRRRGGAGGAKNEANGGKKRSRSGSHKK
KKKETELKNFYAHQMREAKREQLARLRTRFEEDKARIEKMKAARKFKPFG
*
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mRNA from alignment at scaffold_7:864124..865580-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3182 ID=mRNA_3182|Name=jgi.p|Nanoce1779_2|669960|organism=Nannochloropsis oceanica|type=mRNA|length=1457bp|location=Sequence derived from alignment at scaffold_7:864124..865580- (Nannochloropsis oceanica)
TTTCATTCGAAGAACCTCGTGGTGTGGTGTAGCTTGTGGGGGGGGAGGGG
GGAGGTCGACGAATGACGAAGGCCGTTGCACGCGGCAGCTCTTGCATCGC
CCCCTTTGCCTGGTCCAGACCCCCCACTGATCCCTGTCATTTACGAACCA
CCGTCACCAAAATACACACAGCACGTGAGATCTTTTTTGGGTTTCCTTTC
AGATTGCTTGTGGAGCTGAAAGCACCGCCAACCCCCAGCAGTCTCGCATT
TATCCTCCCTCGCCACTCGCTCCCAAGCGCTCACTAAAACACTACTTGCT
TTATAAGCCACGACTATGCTAGTCAAGGGCTACAATGTCTTAGCAGTGCC
CTTGGGTGAGGATACGTCTAGCCCCTTCTCTTCCTTCCTCTACGTCCGTC
AGCATTCGAGCAAAAGGTAAATTCTGATCCCGCTGATTTCCCGAAGTATC
TTTTGATTTCCTCACGCCATTGCCCCACGCTCAACCATCCATCGACTCCC
ACCGACTCCAACTCCAACCATACCCAAACATCGCATAGCGGCGAAGACTT
ACCCCAAGGAAGGACACTTTTTCTGGCCAACGTCCCCGCGCGGACGGGCG
TGGACATCGGGACCTACTTGAGAGAGGCGTTTGCCCGGTACGGGGAAGTT
GAAGAGGTTCGTGTCAAGGACCACCCTGACGACGAAATCGCCGTCTCTTT
AACAAGCAAATGTGCCATTGGATTTATCGTGTTTCGAACTAGCAAAGGTC
TTAAGGCCGTGATGAGCGCCAGCGGCGATGCTTCCCGTCTATCACCGCCG
TCGAGGAGCGTGCTTTTGCCTGGGTACAAACCTTCCAAACGACAACTCAA
GAAGCAGCAGCAGCAGCAGCAAGAGCAGCAGCAAGAGAGAAGAAAAGAGG
ATGACAAGGAAATTATCGACGATGAAGTGCAAAAACTGATACGGCGCTTC
AGAGCGAGATTGCCACAGGGCAAGGTCTTGCAAGAGGAGGTGGATGGCTA
CATGGCCTCATTCGAGGCCGCCGAGGCAGAGGAGAAGAGAAAAAGGTTCG
CAGCAGCGACAACACCGGATGCCGATGGATTTGTCACCGTGTCGTACGGC
AAGAAACGTCGGCGGGGAGGTGCAGGAGGAGCAAAGAACGAGGCAAATGG
GGGGAAGAAAAGGAGTAGGTCGGGAAGTCACAAGAAGAAAAAGAAGGAGA
CGGAACTGAAGAATTTTTACGCGCACCAGATGCGAGAAGCGAAGCGGGAG
CAGCTTGCCCGTCTTCGGACTCGTTTTGAGGAGGACAAGGCGCGAATAGA
AAAGATGAAAGCCGCAAGGAAATTTAAACCGTTTGGGTAACCAATGGTGT
ACGCGTGTGTGTGCGTGTGTGTGTGCATGTATTTGTGGGTCAAAAGGGAA
AAGAGAGATAAGTTGATGATGCAACACAAATGAAATAAAATACACCCAGA
GGAGCAA
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Coding sequence (CDS) from alignment at scaffold_7:864124..865580-

>mRNA_3182 ID=mRNA_3182|Name=jgi.p|Nanoce1779_2|669960|organism=Nannochloropsis oceanica|type=CDS|length=1806bp|location=Sequence derived from alignment at scaffold_7:864124..865580- (Nannochloropsis oceanica)
CGGCGAAGACTTACCCCAAGGAAGGACACTTTTTCTGGCCAACGTCCCCG
CGCGGACGGGCGTGGACATCGGGACCTACTTGAGAGAGGCGTTTGCCCGG
TACGGGGAAGTTGAAGAGGTTCGTGTCAAGGACCACCCTGACGACGAAAT
CGCCGTCTCTTTAACAAGCAAATGTGCCATTGGATTTATCGTGTTTCGAA
CTAGCAAAGGTCTTAAGGCCGTGATGAGCGCCAGCGGCGATGCTTCCCGT
CTATCACCGCCGTCGAGGAGCGTGCTTTTGCCTGGGTACAAACCTTCCAA
ACGACAACTCAAGAAGCAGCAGCAGCAGCAGCAAGAGCAGCAGCAAGAGA
GAAGAAAAGAGGATGACAAGGAAATTATCGACGATGAAGTGCAAAAACTG
ATACGGCGCTTCAGAGCGAGATTGCCACAGGGCAAGGTCTTGCAAGAGGA
GGTGGATGGCTACATGGCCTCATTCGAGGCCGCCGAGGCAGAGGAGAAGA
GAAAAAGGTTCGCAGCAGCGACAACACCGGATGCCGATGGATTTGTCACC
GTGTCGTACGGCAAGAAACGTCGGCGGGGAGGTGCAGGAGGAGCAAAGAA
CGAGGCAAATGGGGGGAAGAAAAGGAGTAGGTCGGGAAGTCACAAGAAGA
AAAAGAAGGAGACGGAACTGAAGAATTTTTACGCGCACCAGATGCGAGAA
GCGAAGCGGGAGCAGCTTGCCCGTCTTCGGACTCGTTTTGAGGAGGACAA
GGCGCGAATAGAAAAGATGAAAGCCGCAAGGAAATTTAAACCGTTTGGGT
AAATGCTAGTCAAGGGCTACAATGTCTTAGCAGTGCCCTTGGGTGAGGAT
ACGTCTAGCCCCTTCTCTTCCTTCCTCTACGTCCGTCAGCATTCGAGCAA
AAGCGGCGAAGACTTACCCCAAGGAAGGACACTTTTTCTGGCCAACGTCC
CCGCGCGGACGGGCGTGGACATCGGGACCTACTTGAGAGAGGCGTTTGCC
CGGTACGGGGAAGTTGAAGAGGTTCGTGTCAAGGACCACCCTGACGACGA
AATCGCCGTCTCTTTAACAAGCAAATGTGCCATTGGATTTATCGTGTTTC
GAACTAGCAAAGGTCTTAAGGCCGTGATGAGCGCCAGCGGCGATGCTTCC
CGTCTATCACCGCCGTCGAGGAGCGTGCTTTTGCCTGGGTACAAACCTTC
CAAACGACAACTCAAGAAGCAGCAGCAGCAGCAGCAAGAGCAGCAGCAAG
AGAGAAGAAAAGAGGATGACAAGGAAATTATCGACGATGAAGTGCAAAAA
CTGATACGGCGCTTCAGAGCGAGATTGCCACAGGGCAAGGTCTTGCAAGA
GGAGGTGGATGGCTACATGGCCTCATTCGAGGCCGCCGAGGCAGAGGAGA
AGAGAAAAAGGTTCGCAGCAGCGACAACACCGGATGCCGATGGATTTGTC
ACCGTGTCGTACGGCAAGAAACGTCGGCGGGGAGGTGCAGGAGGAGCAAA
GAACGAGGCAAATGGGGGGAAGAAAAGGAGTAGGTCGGGAAGTCACAAGA
AGAAAAAGAAGGAGACGGAACTGAAGAATTTTTACGCGCACCAGATGCGA
GAAGCGAAGCGGGAGCAGCTTGCCCGTCTTCGGACTCGTTTTGAGGAGGA
CAAGGCGCGAATAGAAAAGATGAAAGCCGCAAGGAAATTTAAACCGTTTG
GGTAAATGCTAGTCAAGGGCTACAATGTCTTAGCAGTGCCCTTGGGTGAG
GATACGTCTAGCCCCTTCTCTTCCTTCCTCTACGTCCGTCAGCATTCGAG
CAAAAG
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Synonyms
Publications