jgi.p|Nanoce1779_2|526942, mRNA_3961 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|526942
Unique NamemRNA_3961
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length615
Alignment locationscaffold_8:505510..506124 -

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Properties
Property NameValue
TranscriptId527028
TrackFilteredModels2
ProteinId526942
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:505510..506124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526942gene_3961Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3961CDS_3961Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526942mRNA_3961-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3961 ID=mRNA_3961|Name=jgi.p|Nanoce1779_2|526942|organism=Nannochloropsis oceanica|type=mRNA|length=615bp
ATGAATAAATGCAACCCCGGAGTATCAGACAGGTGGGGGATCTCTCCTTT
GTTCGATGCAATCAAGCATGGGAATTTGTCAGTGGCACGTATTTTGTACG
AGAACGGCGCGCGGCTTTCCAAGGGGAAAGCCGCCACATTTTTGTGCACC
GCGGCGGCGAATGGGGATAGCTCTCTGTTGCAGATGTTGTTTGAGTGTGG
GGTGGATACAAATATAGGAGATTATGATTATCGGTACCCGATTCACTTGG
CAGCGGCGGAGGGGGAGGTGATCTCGGTTGAATTTTTGGTGTATGCGCAC
GCGGATATCAGCGTCAAAGATCGGTGGGGAAGGACGCCGTTGGATGATGC
GATCACGGAGGGCCATTTGTGTTGTGCCAAGATGTTAATGAGCTTCGGGG
CAGAGCATACGATATCAGTGGATGCAACAACGCAGTCGAAGATTGAGGAG
GTGGATCTTAAGGAAGTCAGGGAGATGGTGAGGGTAGAAAGGACAGTGCA
GGAGCAGAGGAAGAGTGTGGCGAAGCAACTGCGGGACACAGTTAAGTGGA
TGGCAACCGAGAGTGAGACATGGTTGAAAACCTTGGAAGATAGATTGAAG
CACTTACAAAGGACG
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protein sequence of jgi.p|Nanoce1779_2|526942

>mRNA_3961-protein ID=mRNA_3961-protein|Name=jgi.p|Nanoce1779_2|526942|organism=Nannochloropsis oceanica|type=polypeptide|length=205bp
MNKCNPGVSDRWGISPLFDAIKHGNLSVARILYENGARLSKGKAATFLCT
AAANGDSSLLQMLFECGVDTNIGDYDYRYPIHLAAAEGEVISVEFLVYAH
ADISVKDRWGRTPLDDAITEGHLCCAKMLMSFGAEHTISVDATTQSKIEE
VDLKEVREMVRVERTVQEQRKSVAKQLRDTVKWMATESETWLKTLEDRLK
HLQRT
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mRNA from alignment at scaffold_8:505510..506124-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3961 ID=mRNA_3961|Name=jgi.p|Nanoce1779_2|526942|organism=Nannochloropsis oceanica|type=mRNA|length=615bp|location=Sequence derived from alignment at scaffold_8:505510..506124- (Nannochloropsis oceanica)
ATGAATAAATGCAACCCCGGAGTATCAGACAGGTGGGGGATCTCTCCTTT
GTTCGATGCAATCAAGCATGGGAATTTGTCAGTGGCACGTATTTTGTACG
AGAACGGCGCGCGGCTTTCCAAGGGGAAAGCCGCCACATTTTTGTGCACC
GCGGCGGCGAATGGGGATAGCTCTCTGTTGCAGATGTTGTTTGAGTGTGG
GGTGGATACAAATATAGGAGATTATGATTATCGGTACCCGATTCACTTGG
CAGCGGCGGAGGGGGAGGTGATCTCGGTTGAATTTTTGGTGTATGCGCAC
GCGGATATCAGCGTCAAAGATCGGTGGGGAAGGACGCCGTTGGATGATGC
GATCACGGAGGGCCATTTGTGTTGTGCCAAGATGTTAATGAGCTTCGGGG
CAGAGCATACGATATCAGTGGATGCAACAACGCAGTCGAAGATTGAGGAG
GTGGATCTTAAGGAAGTCAGGGAGATGGTGAGGGTAGAAAGGACAGTGCA
GGAGCAGAGGAAGAGTGTGGCGAAGCAACTGCGGGACACAGTTAAGTGGA
TGGCAACCGAGAGTGAGACATGGTTGAAAACCTTGGAAGATAGATTGAAG
CACTTACAAAGGACG
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Coding sequence (CDS) from alignment at scaffold_8:505510..506124-

>mRNA_3961 ID=mRNA_3961|Name=jgi.p|Nanoce1779_2|526942|organism=Nannochloropsis oceanica|type=CDS|length=615bp|location=Sequence derived from alignment at scaffold_8:505510..506124- (Nannochloropsis oceanica)
ATGAATAAATGCAACCCCGGAGTATCAGACAGGTGGGGGATCTCTCCTTT
GTTCGATGCAATCAAGCATGGGAATTTGTCAGTGGCACGTATTTTGTACG
AGAACGGCGCGCGGCTTTCCAAGGGGAAAGCCGCCACATTTTTGTGCACC
GCGGCGGCGAATGGGGATAGCTCTCTGTTGCAGATGTTGTTTGAGTGTGG
GGTGGATACAAATATAGGAGATTATGATTATCGGTACCCGATTCACTTGG
CAGCGGCGGAGGGGGAGGTGATCTCGGTTGAATTTTTGGTGTATGCGCAC
GCGGATATCAGCGTCAAAGATCGGTGGGGAAGGACGCCGTTGGATGATGC
GATCACGGAGGGCCATTTGTGTTGTGCCAAGATGTTAATGAGCTTCGGGG
CAGAGCATACGATATCAGTGGATGCAACAACGCAGTCGAAGATTGAGGAG
GTGGATCTTAAGGAAGTCAGGGAGATGGTGAGGGTAGAAAGGACAGTGCA
GGAGCAGAGGAAGAGTGTGGCGAAGCAACTGCGGGACACAGTTAAGTGGA
TGGCAACCGAGAGTGAGACATGGTTGAAAACCTTGGAAGATAGATTGAAG
CACTTACAAAGGACG
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Synonyms
Publications