jgi.p|Nanoce1779_2|413377, mRNA_3798 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|413377
Unique NamemRNA_3798
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length485
Alignment locationscaffold_8:14291..14775 +

Link to JBrowse

Properties
Property NameValue
TranscriptId413463
TrackFilteredModels2
ProteinId413377
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:14291..14775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|413377gene_3798Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|413377mRNA_3798-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3798CDS_3798Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3798 ID=mRNA_3798|Name=jgi.p|Nanoce1779_2|413377|organism=Nannochloropsis oceanica|type=mRNA|length=485bp
GAAGAAAGAGAAGTGAGTGCAGGCATGTAAAGCATATTGTTCTCCCTAAT
TTCTCCTCCTTTCTCCGAATTTTTCGTGTACGCGACAATATTCCTTACCC
CGACATCAGTGATGCTGTCTGCCTCCCCGCAGCACCGCACCACAACCGTG
GTCTTGCTACTACCGCTCTTGTTATGGGACGGGGAGAGGGCGATATCGAC
CAGCTTCTTGTTGCTACCGCTGCTGGTGGTGCTGCCTTTCGCGTCGGCTT
CCATATCTAGGAAAGGTCCTGCCAAGGCCGAGCGTGCTTTGTCTGGTAGG
GTGTACGGTAGTAGGGAGACAGCACGTCCTGTCAGGGTAAACAGCACCCA
CTTTTGTGGGCTTTGCTTGCTTTGAGGACTGGCTGAGCCTAGAGTTGTCA
AGAGTCAGAAAAGGCCTGCACGGCACGACTGCAACTGAGCAGAATCGCAG
TTCAAGGTGTCTGTGGGTGTGGGTGCATGTACGAT
back to top

protein sequence of jgi.p|Nanoce1779_2|413377

>mRNA_3798-protein ID=mRNA_3798-protein|Name=jgi.p|Nanoce1779_2|413377|organism=Nannochloropsis oceanica|type=polypeptide|length=88bp
MLSASPQHRTTTVVLLLPLLLWDGERAISTSFLLLPLLVVLPFASASISR
KGPAKAERALSGRVYGSRETARPVRVNSTHFCGLCLL*
back to top

mRNA from alignment at scaffold_8:14291..14775+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3798 ID=mRNA_3798|Name=jgi.p|Nanoce1779_2|413377|organism=Nannochloropsis oceanica|type=mRNA|length=485bp|location=Sequence derived from alignment at scaffold_8:14291..14775+ (Nannochloropsis oceanica)
GAAGAAAGAGAAGTGAGTGCAGGCATGTAAAGCATATTGTTCTCCCTAAT
TTCTCCTCCTTTCTCCGAATTTTTCGTGTACGCGACAATATTCCTTACCC
CGACATCAGTGATGCTGTCTGCCTCCCCGCAGCACCGCACCACAACCGTG
GTCTTGCTACTACCGCTCTTGTTATGGGACGGGGAGAGGGCGATATCGAC
CAGCTTCTTGTTGCTACCGCTGCTGGTGGTGCTGCCTTTCGCGTCGGCTT
CCATATCTAGGAAAGGTCCTGCCAAGGCCGAGCGTGCTTTGTCTGGTAGG
GTGTACGGTAGTAGGGAGACAGCACGTCCTGTCAGGGTAAACAGCACCCA
CTTTTGTGGGCTTTGCTTGCTTTGAGGACTGGCTGAGCCTAGAGTTGTCA
AGAGTCAGAAAAGGCCTGCACGGCACGACTGCAACTGAGCAGAATCGCAG
TTCAAGGTGTCTGTGGGTGTGGGTGCATGTACGAT
back to top

Coding sequence (CDS) from alignment at scaffold_8:14291..14775+

>mRNA_3798 ID=mRNA_3798|Name=jgi.p|Nanoce1779_2|413377|organism=Nannochloropsis oceanica|type=CDS|length=264bp|location=Sequence derived from alignment at scaffold_8:14291..14775+ (Nannochloropsis oceanica)
ATGCTGTCTGCCTCCCCGCAGCACCGCACCACAACCGTGGTCTTGCTACT
ACCGCTCTTGTTATGGGACGGGGAGAGGGCGATATCGACCAGCTTCTTGT
TGCTACCGCTGCTGGTGGTGCTGCCTTTCGCGTCGGCTTCCATATCTAGG
AAAGGTCCTGCCAAGGCCGAGCGTGCTTTGTCTGGTAGGGTGTACGGTAG
TAGGGAGACAGCACGTCCTGTCAGGGTAAACAGCACCCACTTTTGTGGGC
TTTGCTTGCTTTGA
back to top
Synonyms
Publications