jgi.p|Nanoce1779_2|419229, mRNA_3956 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|419229
Unique NamemRNA_3956
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length520
Alignment locationscaffold_8:488485..489004 -

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Properties
Property NameValue
TranscriptId419315
TrackFilteredModels2
ProteinId419229
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:488485..489004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|419229gene_3956Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|419229mRNA_3956-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3956CDS_3956Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3956 ID=mRNA_3956|Name=jgi.p|Nanoce1779_2|419229|organism=Nannochloropsis oceanica|type=mRNA|length=520bp
AGAACCGTCCGTGCCTTTTATTTTTGTCGAGGCTATTTCCTACCAGCATT
GCTTTCGGGTTTCCTTCGCGCCTTTGGCTTTTTCCTGTCGCTGCTTCTGG
TACTGCTACTGTCTGCTGATGTTGGTGCTTTGTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTTCTTCGGATATACATTTTCTTCC
ATGACACATGCCCTACCCCTCTCTCTCTTCATAGGGTTAGGGTTAGTTTG
AGTGTTTCTCTTGCTTGCCTTCAACCGGCCCAGTTGCTGCTGACGGTGCT
GCTGGTAGTACTGCTGGTAATGCTAATAAAATCTATTGTCTCTATCGTCC
ATTCTTTTCTTCTCTTCAGACGTATACATCCTCCAATAAGAAATATCCGC
CCCTCTCCCCTCTAGTTATTTCTGGGTCTCCTTCAACCGGCCCATTCACC
ACCTATCTTCCTCTCTCTTTTCCGTCTTCTGCTGGTCCAGCTTGCTGATA
ACCGCGCCTCGACAAGCCCC
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protein sequence of jgi.p|Nanoce1779_2|419229

>mRNA_3956-protein ID=mRNA_3956-protein|Name=jgi.p|Nanoce1779_2|419229|organism=Nannochloropsis oceanica|type=polypeptide|length=99bp
MLVLCLSLSLSLSLSLSLSLLRIYIFFHDTCPTPLSLHRVRVSLSVSLAC
LQPAQLLLTVLLVVLLVMLIKSIVSIVHSFLLFRRIHPPIRNIRPSPL*
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mRNA from alignment at scaffold_8:488485..489004-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3956 ID=mRNA_3956|Name=jgi.p|Nanoce1779_2|419229|organism=Nannochloropsis oceanica|type=mRNA|length=520bp|location=Sequence derived from alignment at scaffold_8:488485..489004- (Nannochloropsis oceanica)
AGAACCGTCCGTGCCTTTTATTTTTGTCGAGGCTATTTCCTACCAGCATT
GCTTTCGGGTTTCCTTCGCGCCTTTGGCTTTTTCCTGTCGCTGCTTCTGG
TACTGCTACTGTCTGCTGATGTTGGTGCTTTGTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTTCTTCGGATATACATTTTCTTCC
ATGACACATGCCCTACCCCTCTCTCTCTTCATAGGGTTAGGGTTAGTTTG
AGTGTTTCTCTTGCTTGCCTTCAACCGGCCCAGTTGCTGCTGACGGTGCT
GCTGGTAGTACTGCTGGTAATGCTAATAAAATCTATTGTCTCTATCGTCC
ATTCTTTTCTTCTCTTCAGACGTATACATCCTCCAATAAGAAATATCCGC
CCCTCTCCCCTCTAGTTATTTCTGGGTCTCCTTCAACCGGCCCATTCACC
ACCTATCTTCCTCTCTCTTTTCCGTCTTCTGCTGGTCCAGCTTGCTGATA
ACCGCGCCTCGACAAGCCCC
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Coding sequence (CDS) from alignment at scaffold_8:488485..489004-

>mRNA_3956 ID=mRNA_3956|Name=jgi.p|Nanoce1779_2|419229|organism=Nannochloropsis oceanica|type=CDS|length=297bp|location=Sequence derived from alignment at scaffold_8:488485..489004- (Nannochloropsis oceanica)
ATGTTGGTGCTTTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTTCTTCGGATATACATTTTCTTCCATGACACATGCCCTACCC
CTCTCTCTCTTCATAGGGTTAGGGTTAGTTTGAGTGTTTCTCTTGCTTGC
CTTCAACCGGCCCAGTTGCTGCTGACGGTGCTGCTGGTAGTACTGCTGGT
AATGCTAATAAAATCTATTGTCTCTATCGTCCATTCTTTTCTTCTCTTCA
GACGTATACATCCTCCAATAAGAAATATCCGCCCCTCTCCCCTCTAG
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Synonyms
Publications