jgi.p|Nanoce1779_2|585993, mRNA_3971 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585993
Unique Name	mRNA_3971
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1719
Alignment location	scaffold_8:527482..529200 +

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Properties


Property Name	Value
TranscriptId	586079
Track	FilteredModels2
ProteinId	585993

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:527482..529200 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585993	gene_3971	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585993	mRNA_3971-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3971	CDS_3971	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:527482..529200+
coding sequence from alignment at scaffold_8:527482..529200+

mRNA sequence

>mRNA_3971 ID=mRNA_3971|Name=jgi.p|Nanoce1779_2|585993|organism=Nannochloropsis oceanica|type=mRNA|length=1719bp
CGGGGCGCAAGCGACGCAAGGTAGATAATGACAACGACGACGATGAGGAG
GAGGAAGAGGAGGAAGAGGAGGAAGAAGAAGAGGAAGAGGACGAGGAGAA
CAGCGAGGAGGAAAGGGAAGGAGGCGGCAGAGGCCATCGCAGGAGCTGGG
GCAAGGGGAAAACCGCTGCAAAAGAGAAAGGGAAAGGGAAAGCCAAGTCC
CTGACGAGCGTGGGCAGTAGCAAGGTGGACAAGGTCCTGGAGGAGGTGCG
GCTGCTGATGCTCCGTTCCCGGCGTTATGACGCGCCTAACCCTTCCCTGG
CTGAATTGGGAATAACGACTGTGCGAGAGGTATCGGACATGGCGCCGGAG
GGTGTGTTGTGGGAGATTGAGCAGACGGTATTGCAGGTGGCAGGGATGAT
TTTGAGGGGAGAGGGCTTTAGCTATCAGGTCCCCACGAGGTCGGCGACGA
ATCAGTTGTACATAGCGGAATTGGATCGGATTGTGTTGAGTGACAAGGTG
GCGACGCGAACATTTCTCAATCCGAGGGAGGTGAGGAAGACAGCGATTAC
CACGCGAATCTTGCAGTTGGTGCATGAGGTTTTGAGTAAGGGGATTCATA
TCACGAAGCGCGATATGTTTTATACGGACGTGAAGCTGTTTAAAGACCAG
AAGGAGAGTGATGTGGTGCTTGATGATGTTGCTTGTATGCTGGGCTGCAC
CCGGTCGTGTTTGAATGTGGTGGCGTCAGAGAAAGGGTTGGTGGTTGGGC
GAGTGCAGTTTGAGGAGGACGGCGATTATATCGATTGTACGAGGATGGGG
GTGGGGGGAAAGGCCATCCCGCCTTACATTGACAAGATTGCTAAGATACA
GAGTGACGCCAAGTTCATCCTTTTGGTGGAAAAAGAGGCCGCGTACATGC
GCCTGGCGGAGGACAGATTCTATAACAAGTACCCATGTATCGTAATCACG
GCCAAGGGACAGCCGGACGTGGCCACGCGCTTGTTTCTCAAGAAGCTAAA
GATGGAGTTGCACATCCCGGTCTTGGGGCTCGTGGATTCCGACCCTTACG
GCCTCAAAATCCTAAGCGTGTACATGACCGGCTCGAAAAATATGAGCTAC
GATTCCGCGTCGCTCACCACCTCGGACATCAAGTGGTTAGGGGTCCGGCC
GTCAGACCTGGATAAATATAACATTCCCGCACAATGCCGACTAGATATGA
CGGAGCACGACATGCGGACGGGCCGGCAGCTGCTGCAGGAAGAATTCATC
CAGAAGAACCCGGAGTGGGTGAAGGAATTGGAACTTATGCTCAAGATGAA
GAAAAAGGCGGAGATCCAGGCACTGTCGGCGTTTGGCTTTCAGTACATTA
CCGAGGACTATTTGCCGCGCAAGCTCGAAAAGGGCGATTGGATTTAAGGC
CTTGCTTCCCGCCCTCCTCCCCCTCGCCTTTACTGATGTGTGTATATTTC
TCTGACAGGACAGAGATGACGGAGCCGAGACGCGACCAAGTGGGGGACAA
ACAGATAAAGAAGTGGAAACATGAATGAGAAGGAGAAAGGCTGGCTGAGC
ATGACACGGATATGCTGAAAAACAAAAGATATACATATGAAAACAAAGGA
TGAAACAGCGTGATTGACCAAGGAAAAAAAATTTGGCAAGCAAGGTTATA
CCACAATGATAACAGACGATGTCTTAAGGGGAAGCAGCATTAAAAAAAAG
AACTGAAAAGAAAACCCGG

protein sequence of jgi.p|Nanoce1779_2|585993

>mRNA_3971-protein ID=mRNA_3971-protein|Name=jgi.p|Nanoce1779_2|585993|organism=Nannochloropsis oceanica|type=polypeptide|length=380bp
MLRSRRYDAPNPSLAELGITTVREVSDMAPEGVLWEIEQTVLQVAGMILR
GEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRTFLNPREVRKTAITTR
ILQLVHEVLSKGIHITKRDMFYTDVKLFKDQKESDVVLDDVACMLGCTRS
CLNVVASEKGLVVGRVQFEEDGDYIDCTRMGVGGKAIPPYIDKIAKIQSD
AKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKME
LHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSD
LDKYNIPAQCRLDMTEHDMRTGRQLLQEEFIQKNPEWVKELELMLKMKKK
AEIQALSAFGFQYITEDYLPRKLEKGDWI*

mRNA from alignment at scaffold_8:527482..529200+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3971 ID=mRNA_3971|Name=jgi.p|Nanoce1779_2|585993|organism=Nannochloropsis oceanica|type=mRNA|length=1719bp|location=Sequence derived from alignment at scaffold_8:527482..529200+ (Nannochloropsis oceanica)
CGGGGCGCAAGCGACGCAAGGTAGATAATGACAACGACGACGATGAGGAG
GAGGAAGAGGAGGAAGAGGAGGAAGAAGAAGAGGAAGAGGACGAGGAGAA
CAGCGAGGAGGAAAGGGAAGGAGGCGGCAGAGGCCATCGCAGGAGCTGGG
GCAAGGGGAAAACCGCTGCAAAAGAGAAAGGGAAAGGGAAAGCCAAGTCC
CTGACGAGCGTGGGCAGTAGCAAGGTGGACAAGGTCCTGGAGGAGGTGCG
GCTGCTGATGCTCCGTTCCCGGCGTTATGACGCGCCTAACCCTTCCCTGG
CTGAATTGGGAATAACGACTGTGCGAGAGGTATCGGACATGGCGCCGGAG
GGTGTGTTGTGGGAGATTGAGCAGACGGTATTGCAGGTGGCAGGGATGAT
TTTGAGGGGAGAGGGCTTTAGCTATCAGGTCCCCACGAGGTCGGCGACGA
ATCAGTTGTACATAGCGGAATTGGATCGGATTGTGTTGAGTGACAAGGTG
GCGACGCGAACATTTCTCAATCCGAGGGAGGTGAGGAAGACAGCGATTAC
CACGCGAATCTTGCAGTTGGTGCATGAGGTTTTGAGTAAGGGGATTCATA
TCACGAAGCGCGATATGTTTTATACGGACGTGAAGCTGTTTAAAGACCAG
AAGGAGAGTGATGTGGTGCTTGATGATGTTGCTTGTATGCTGGGCTGCAC
CCGGTCGTGTTTGAATGTGGTGGCGTCAGAGAAAGGGTTGGTGGTTGGGC
GAGTGCAGTTTGAGGAGGACGGCGATTATATCGATTGTACGAGGATGGGG
GTGGGGGGAAAGGCCATCCCGCCTTACATTGACAAGATTGCTAAGATACA
GAGTGACGCCAAGTTCATCCTTTTGGTGGAAAAAGAGGCCGCGTACATGC
GCCTGGCGGAGGACAGATTCTATAACAAGTACCCATGTATCGTAATCACG
GCCAAGGGACAGCCGGACGTGGCCACGCGCTTGTTTCTCAAGAAGCTAAA
GATGGAGTTGCACATCCCGGTCTTGGGGCTCGTGGATTCCGACCCTTACG
GCCTCAAAATCCTAAGCGTGTACATGACCGGCTCGAAAAATATGAGCTAC
GATTCCGCGTCGCTCACCACCTCGGACATCAAGTGGTTAGGGGTCCGGCC
GTCAGACCTGGATAAATATAACATTCCCGCACAATGCCGACTAGATATGA
CGGAGCACGACATGCGGACGGGCCGGCAGCTGCTGCAGGAAGAATTCATC
CAGAAGAACCCGGAGTGGGTGAAGGAATTGGAACTTATGCTCAAGATGAA
GAAAAAGGCGGAGATCCAGGCACTGTCGGCGTTTGGCTTTCAGTACATTA
CCGAGGACTATTTGCCGCGCAAGCTCGAAAAGGGCGATTGGATTTAAGGC
CTTGCTTCCCGCCCTCCTCCCCCTCGCCTTTACTGATGTGTGTATATTTC
TCTGACAGGACAGAGATGACGGAGCCGAGACGCGACCAAGTGGGGGACAA
ACAGATAAAGAAGTGGAAACATGAATGAGAAGGAGAAAGGCTGGCTGAGC
ATGACACGGATATGCTGAAAAACAAAAGATATACATATGAAAACAAAGGA
TGAAACAGCGTGATTGACCAAGGAAAAAAAATTTGGCAAGCAAGGTTATA
CCACAATGATAACAGACGATGTCTTAAGGGGAAGCAGCATTAAAAAAAAG
AACTGAAAAGAAAACCCGG

Coding sequence (CDS) from alignment at scaffold_8:527482..529200+

>mRNA_3971 ID=mRNA_3971|Name=jgi.p|Nanoce1779_2|585993|organism=Nannochloropsis oceanica|type=CDS|length=1140bp|location=Sequence derived from alignment at scaffold_8:527482..529200+ (Nannochloropsis oceanica)
ATGCTCCGTTCCCGGCGTTATGACGCGCCTAACCCTTCCCTGGCTGAATT
GGGAATAACGACTGTGCGAGAGGTATCGGACATGGCGCCGGAGGGTGTGT
TGTGGGAGATTGAGCAGACGGTATTGCAGGTGGCAGGGATGATTTTGAGG
GGAGAGGGCTTTAGCTATCAGGTCCCCACGAGGTCGGCGACGAATCAGTT
GTACATAGCGGAATTGGATCGGATTGTGTTGAGTGACAAGGTGGCGACGC
GAACATTTCTCAATCCGAGGGAGGTGAGGAAGACAGCGATTACCACGCGA
ATCTTGCAGTTGGTGCATGAGGTTTTGAGTAAGGGGATTCATATCACGAA
GCGCGATATGTTTTATACGGACGTGAAGCTGTTTAAAGACCAGAAGGAGA
GTGATGTGGTGCTTGATGATGTTGCTTGTATGCTGGGCTGCACCCGGTCG
TGTTTGAATGTGGTGGCGTCAGAGAAAGGGTTGGTGGTTGGGCGAGTGCA
GTTTGAGGAGGACGGCGATTATATCGATTGTACGAGGATGGGGGTGGGGG
GAAAGGCCATCCCGCCTTACATTGACAAGATTGCTAAGATACAGAGTGAC
GCCAAGTTCATCCTTTTGGTGGAAAAAGAGGCCGCGTACATGCGCCTGGC
GGAGGACAGATTCTATAACAAGTACCCATGTATCGTAATCACGGCCAAGG
GACAGCCGGACGTGGCCACGCGCTTGTTTCTCAAGAAGCTAAAGATGGAG
TTGCACATCCCGGTCTTGGGGCTCGTGGATTCCGACCCTTACGGCCTCAA
AATCCTAAGCGTGTACATGACCGGCTCGAAAAATATGAGCTACGATTCCG
CGTCGCTCACCACCTCGGACATCAAGTGGTTAGGGGTCCGGCCGTCAGAC
CTGGATAAATATAACATTCCCGCACAATGCCGACTAGATATGACGGAGCA
CGACATGCGGACGGGCCGGCAGCTGCTGCAGGAAGAATTCATCCAGAAGA
ACCCGGAGTGGGTGAAGGAATTGGAACTTATGCTCAAGATGAAGAAAAAG
GCGGAGATCCAGGCACTGTCGGCGTTTGGCTTTCAGTACATTACCGAGGA
CTATTTGCCGCGCAAGCTCGAAAAGGGCGATTGGATTTAA

Synonyms

Publications