jgi.p|Nanoce1779_2|586402, mRNA_4073 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586402
Unique NamemRNA_4073
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1166
Alignment locationscaffold_8:767659..768824 -

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Properties
Property NameValue
TranscriptId586488
TrackFilteredModels2
ProteinId586402
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:767659..768824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586402gene_4073Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586402mRNA_4073-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4073CDS_4073Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4073 ID=mRNA_4073|Name=jgi.p|Nanoce1779_2|586402|organism=Nannochloropsis oceanica|type=mRNA|length=1166bp
CAGGCGTATCCTTGACTTGCTTTGTCCAAATGCCGCAAATGAGAGATTCC
CACATGCCAGTCATCGCCGTCGCCTCCGCTTCCACCTGCCTGCTCCAACT
GCTACTTCTACAACTGCTAGTGCTGCTACCATGGCAGATGCAAGCCTTCA
TGATACCGTCCTTAATGACCCAGACATCTTTATCGCTCTTTCGCAACACT
ATCACTGGGGCAAGAAGACCAAGCTCCCCCCTCTTTTCTCAGACTGAAAA
TGACGGGGGGAAAGGGGAAGAATGGTGGAGACCCAAGCCTGAATGGCGGG
ACGACGCCCAACTTGACATCCCTGGCCTGGCATCCTCCGAGCTCCCCGAC
AGCTTTGATGATGCGCTGATAATTGCGGTAGAAGCGGCCCAAGAGGCGTT
CGCCGCGGGCCGCAGTCGTGTCCGCATTGATTTTGATACCACAGCAGGGG
ACCTGACCTACACTACGCTCAAAAATTCTCTGCCCTTGGCGTTAGCCTTC
GCGCAATATCTCGGCAAGGAAATTATGGAAGAGGACAAGATTGTGATGGA
CGAGGAGGGGAAGAAAGTTGGCTATGAAGGGAATAAGCTCGTGGTCATTT
TCCCAGACACAGGCTCGGCCGTGTGGGCGCAGCAAGAATGGAAAGTAGGG
AAATTTGGCAAGTCCGCCAAAGTGCCACCATCCGTGCGTTGCGCTGCCTT
TCCCAATGGACAGGTCGATCTGACCACTGATGCTGCTTTCCTTATTGTTT
GTCCAAAGGCGTCTGAAGCACAGGCCACGTTTGACTTGCTTACCTCATTG
CCGCCTGATTCGAAGGTAGTATTAATGAACCCGGAATTGATCAATGCCGA
AGTGGTGGGCTTTGGGATGGCGGGGCGTCGGATCCGTGATGAAGTGGAGA
ATAAATTTGAGAGGGTATACTATTTGAAGACGTTAAGTTGGGGGGCCTTG
ACTCGACGGTGGCCCGCGGGCTTTTCCATCTGGTTGGAGGACGAGGGGGT
TGAGGAGGGGTACAGGCTTCTGAAAACTGTAGGGAGGTTTCCGTCTTTGG
ATGACATGGAAGATATCAAAGATGCGGCGGATCAGCAAAGTGGGGAAAAT
AGGGGGGTCTTGTCTGAGCTGGCACGGTTTTTTGATTCCTTTCGGAAGAT
GTAATGGTTTTCGGGG
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protein sequence of jgi.p|Nanoce1779_2|586402

>mRNA_4073-protein ID=mRNA_4073-protein|Name=jgi.p|Nanoce1779_2|586402|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MPQMRDSHMPVIAVASASTCLLQLLLLQLLVLLPWQMQAFMIPSLMTQTS
LSLFRNTITGARRPSSPLFSQTENDGGKGEEWWRPKPEWRDDAQLDIPGL
ASSELPDSFDDALIIAVEAAQEAFAAGRSRVRIDFDTTAGDLTYTTLKNS
LPLALAFAQYLGKEIMEEDKIVMDEEGKKVGYEGNKLVVIFPDTGSAVWA
QQEWKVGKFGKSAKVPPSVRCAAFPNGQVDLTTDAAFLIVCPKASEAQAT
FDLLTSLPPDSKVVLMNPELINAEVVGFGMAGRRIRDEVENKFERVYYLK
TLSWGALTRRWPAGFSIWLEDEGVEEGYRLLKTVGRFPSLDDMEDIKDAA
DQQSGENRGVLSELARFFDSFRKM*
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mRNA from alignment at scaffold_8:767659..768824-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4073 ID=mRNA_4073|Name=jgi.p|Nanoce1779_2|586402|organism=Nannochloropsis oceanica|type=mRNA|length=1166bp|location=Sequence derived from alignment at scaffold_8:767659..768824- (Nannochloropsis oceanica)
CAGGCGTATCCTTGACTTGCTTTGTCCAAATGCCGCAAATGAGAGATTCC
CACATGCCAGTCATCGCCGTCGCCTCCGCTTCCACCTGCCTGCTCCAACT
GCTACTTCTACAACTGCTAGTGCTGCTACCATGGCAGATGCAAGCCTTCA
TGATACCGTCCTTAATGACCCAGACATCTTTATCGCTCTTTCGCAACACT
ATCACTGGGGCAAGAAGACCAAGCTCCCCCCTCTTTTCTCAGACTGAAAA
TGACGGGGGGAAAGGGGAAGAATGGTGGAGACCCAAGCCTGAATGGCGGG
ACGACGCCCAACTTGACATCCCTGGCCTGGCATCCTCCGAGCTCCCCGAC
AGCTTTGATGATGCGCTGATAATTGCGGTAGAAGCGGCCCAAGAGGCGTT
CGCCGCGGGCCGCAGTCGTGTCCGCATTGATTTTGATACCACAGCAGGGG
ACCTGACCTACACTACGCTCAAAAATTCTCTGCCCTTGGCGTTAGCCTTC
GCGCAATATCTCGGCAAGGAAATTATGGAAGAGGACAAGATTGTGATGGA
CGAGGAGGGGAAGAAAGTTGGCTATGAAGGGAATAAGCTCGTGGTCATTT
TCCCAGACACAGGCTCGGCCGTGTGGGCGCAGCAAGAATGGAAAGTAGGG
AAATTTGGCAAGTCCGCCAAAGTGCCACCATCCGTGCGTTGCGCTGCCTT
TCCCAATGGACAGGTCGATCTGACCACTGATGCTGCTTTCCTTATTGTTT
GTCCAAAGGCGTCTGAAGCACAGGCCACGTTTGACTTGCTTACCTCATTG
CCGCCTGATTCGAAGGTAGTATTAATGAACCCGGAATTGATCAATGCCGA
AGTGGTGGGCTTTGGGATGGCGGGGCGTCGGATCCGTGATGAAGTGGAGA
ATAAATTTGAGAGGGTATACTATTTGAAGACGTTAAGTTGGGGGGCCTTG
ACTCGACGGTGGCCCGCGGGCTTTTCCATCTGGTTGGAGGACGAGGGGGT
TGAGGAGGGGTACAGGCTTCTGAAAACTGTAGGGAGGTTTCCGTCTTTGG
ATGACATGGAAGATATCAAAGATGCGGCGGATCAGCAAAGTGGGGAAAAT
AGGGGGGTCTTGTCTGAGCTGGCACGGTTTTTTGATTCCTTTCGGAAGAT
GTAATGGTTTTCGGGG
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Coding sequence (CDS) from alignment at scaffold_8:767659..768824-

>mRNA_4073 ID=mRNA_4073|Name=jgi.p|Nanoce1779_2|586402|organism=Nannochloropsis oceanica|type=CDS|length=1125bp|location=Sequence derived from alignment at scaffold_8:767659..768824- (Nannochloropsis oceanica)
ATGCCGCAAATGAGAGATTCCCACATGCCAGTCATCGCCGTCGCCTCCGC
TTCCACCTGCCTGCTCCAACTGCTACTTCTACAACTGCTAGTGCTGCTAC
CATGGCAGATGCAAGCCTTCATGATACCGTCCTTAATGACCCAGACATCT
TTATCGCTCTTTCGCAACACTATCACTGGGGCAAGAAGACCAAGCTCCCC
CCTCTTTTCTCAGACTGAAAATGACGGGGGGAAAGGGGAAGAATGGTGGA
GACCCAAGCCTGAATGGCGGGACGACGCCCAACTTGACATCCCTGGCCTG
GCATCCTCCGAGCTCCCCGACAGCTTTGATGATGCGCTGATAATTGCGGT
AGAAGCGGCCCAAGAGGCGTTCGCCGCGGGCCGCAGTCGTGTCCGCATTG
ATTTTGATACCACAGCAGGGGACCTGACCTACACTACGCTCAAAAATTCT
CTGCCCTTGGCGTTAGCCTTCGCGCAATATCTCGGCAAGGAAATTATGGA
AGAGGACAAGATTGTGATGGACGAGGAGGGGAAGAAAGTTGGCTATGAAG
GGAATAAGCTCGTGGTCATTTTCCCAGACACAGGCTCGGCCGTGTGGGCG
CAGCAAGAATGGAAAGTAGGGAAATTTGGCAAGTCCGCCAAAGTGCCACC
ATCCGTGCGTTGCGCTGCCTTTCCCAATGGACAGGTCGATCTGACCACTG
ATGCTGCTTTCCTTATTGTTTGTCCAAAGGCGTCTGAAGCACAGGCCACG
TTTGACTTGCTTACCTCATTGCCGCCTGATTCGAAGGTAGTATTAATGAA
CCCGGAATTGATCAATGCCGAAGTGGTGGGCTTTGGGATGGCGGGGCGTC
GGATCCGTGATGAAGTGGAGAATAAATTTGAGAGGGTATACTATTTGAAG
ACGTTAAGTTGGGGGGCCTTGACTCGACGGTGGCCCGCGGGCTTTTCCAT
CTGGTTGGAGGACGAGGGGGTTGAGGAGGGGTACAGGCTTCTGAAAACTG
TAGGGAGGTTTCCGTCTTTGGATGACATGGAAGATATCAAAGATGCGGCG
GATCAGCAAAGTGGGGAAAATAGGGGGGTCTTGTCTGAGCTGGCACGGTT
TTTTGATTCCTTTCGGAAGATGTAA
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Synonyms
Publications