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Properties
Property Name | Value |
TranscriptId | 627092 |
Track | FilteredModels2 |
ProteinId | 627006 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_1 | supercontig | scaffold_1:1292796..1295015 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1708 ID=mRNA_1708|Name=jgi.p|Nanoce1779_2|627006|organism=Nannochloropsis oceanica|type=mRNA|length=2220bp ATGTCACAATGCAAGCGGCTCCTAGACGATTCGGGAGACGGTGGGCCGCG AGCTTCATCAACAGCAGCAGCAGAGGTCGGGGCAGCGGGGGGAGATGGGC AGCAGCAGCAGCAACAGCAAAACGGAGGAGGCCAGATGTCCGACACAACA ACTACAGTTAGAAGCAGCACCACCAACAACGGCAGAGGCCTTATGACACG CCGACAGGGCGACGGGCAAGGCAGTGGAAACAATTGGGGTGGGAACGACG AAGAGGAGGATGGGCAAGGGGAAGAGCGCCCGTGGGTGCCAGGGGAGGAA CTAAGGTATTGGGCCGTGACTCGAACACTGCGTCTCGCACTCTTCGTGGC GTTCGTGGGCTTGGTACGCTCTGTCTTATCGTCGCAGGCCATATTCTACC TCGTCCTGTGGGTGGCGTCTCTGACGACCATGGCCTCGATGACTTACCAA CGTGTGCGGGAACGAGGCCTGCTCACCTACCTGCCCCCCTCGACCCAAGA ACTCCTCCTGCAGACCTCGCTGCTGGACTGGCTCCTCGACACATCCATGG CTGATCGTCTGAAGCCATATGCCGTCATCGGGATGGGATTGAATGAGGAG GAACGCTCCTTTCTCATCAGCAGTCTTCCTCCACCGGAGCAACGAGCTTT GACGGCGCCTGGTTTATTGAACACCTTGCCGGCTTCCGTGCAAAGCATGC TCCTGCCACGCGGTGGTTGCAGCGATGCCGGTGGCATGCTCATGTCAGGA GGGAACGCATGTGTACCGGCAACACCAGCTGCGGCATGTATCGCGACTGC TGCTTCTGCTGGAGGTGGAGGAGAGGGGAGGGAAGGATGGCGACATCGCA TTGAGGAGATCAGTGAGATGCAAGCCGCGGAGATGACCCGTCGACGACTA CAAGAAATGGACGAGCGACGACAGCGGGAGGAAGGGAGGGAGGGAGAGGA GGAAGCGGAGGAAGTGATGACGGCATCTGAGACAGACGAAGAGGACGAGT ACCTGGACGAGCAGGAGGACGGGGGGGAGAGCGGGCGGAGGAGTAGTAAT CGGATGACGCATCAGTTGCCGCGACAGGTGGGCATGGCTATGGGCAGAAA TCCGCAGCGGCGAACACCACAGCAAGGCAACGGCCTCCGGCCGGTTTTTC CCCTCTCCTCTACCTCCTACCACCACCACCAGCAAAACAGCAGCAGCAGG AACACCCGCACCCTCACCACCGACACTACCACCCAATCTCCTCCTCCTCC TCCTCTTTCTCGGCCAGTGTCAGAAAGCTGGCCCGCTCCCGGGGAAGTTG AAGATGTCGCTGCCTACGTTCTTCAACGGCGCCTCCGCCGCGCCTGGGAG CAAGCGGTGCGAGGAAGCGCAGATGCGATCGTCAGTGGAGTAACAGCCAG CTTGAGAAGGCAATTGAGGGATAGACGGCAGGGGTTAGTATACGGAGGGG TGGCCTTGGCGGGGGGGGCGGTAGTGGCGCAGATTTGGCGAGGGAGGGGA GGGGGGGCGGGAGGGGTAGTGCAGCGGTATGGGCGGATGGCAGTTTTAGC AGGGACGGTGGTCTTGGCTTTGCATGATGCATATTTTGCCTCAAAGGAGG AGGAGGAAGAGGGGGAGGAGGAGGAGGAGGAAAGTGCAGAGGGATTATGG GAGGAGGAGGAGGGCGAGGAGGGCTTGCTTGGCGCTGATTTTGCCGCTGG TGTGAGCATGGGCCAACAACGACGAGGACGAGGACGAGGACAAGGACGAC CTCGACAACAGCAGCCTCGGGTATGGATGCAGTGGGGGGCTTTCTTTTTC CTCCTCCTCCTCATTCGCACCGGTCGCCTGGCGCCGATATTGCGGCGTTT GCGGGCGGCCTTTCCGGCTTCCTTCCCCTCGTCCTCCTCGTCTTCCTCCT CCTCCTCCTTGCTGTTGGGTGCGAGCGGACGGAGGTAGACATAGGGAATG ATAAATATTGGATTCGTATGTATGTGTAGGTGGGAAGATGTGAATAATCA AAAGAAACGACACGACAGCTTTTGCCGTTACGCGCATTGAGGGTGCTTCC CAACCATGCCGTCTGCAGTATGTGCCTGCCGTGACCCAGCGAGTCACCCG AGCAATCAAAGTATTTTCAGGCGAGGGAGAAAGGAAAAGACGAGCTCCAC TTCGCACAGGCGTGGCCCTCGTTTGGGGGCAACAAAAGAAAGAAAGAGGG AGACGCGCGTTCAGCGAGAC back to topprotein sequence of jgi.p|Nanoce1779_2|627006 >mRNA_1708-protein ID=mRNA_1708-protein|Name=jgi.p|Nanoce1779_2|627006|organism=Nannochloropsis oceanica|type=polypeptide|length=646bp MSQCKRLLDDSGDGGPRASSTAAAEVGAAGGDGQQQQQQQNGGGQMSDTT TTVRSSTTNNGRGLMTRRQGDGQGSGNNWGGNDEEEDGQGEERPWVPGEE LRYWAVTRTLRLALFVAFVGLVRSVLSSQAIFYLVLWVASLTTMASMTYQ RVRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEE ERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLPRGGCSDAGGMLMSG GNACVPATPAAACIATAASAGGGGEGREGWRHRIEEISEMQAAEMTRRRL QEMDERRQREEGREGEEEAEEVMTASETDEEDEYLDEQEDGGESGRRSSN RMTHQLPRQVGMAMGRNPQRRTPQQGNGLRPVFPLSSTSYHHHQQNSSSR NTRTLTTDTTTQSPPPPPLSRPVSESWPAPGEVEDVAAYVLQRRLRRAWE QAVRGSADAIVSGVTASLRRQLRDRRQGLVYGGVALAGGAVVAQIWRGRG GGAGGVVQRYGRMAVLAGTVVLALHDAYFASKEEEEEGEEEEEESAEGLW EEEEGEEGLLGADFAAGVSMGQQRRGRGRGQGRPRQQQPRVWMQWGAFFF LLLLIRTGRLAPILRRLRAAFPASFPSSSSSSSSSSLLLGASGRR* back to topmRNA from alignment at scaffold_1:1292796..1295015+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1708 ID=mRNA_1708|Name=jgi.p|Nanoce1779_2|627006|organism=Nannochloropsis oceanica|type=mRNA|length=2220bp|location=Sequence derived from alignment at scaffold_1:1292796..1295015+ (Nannochloropsis oceanica) ATGTCACAATGCAAGCGGCTCCTAGACGATTCGGGAGACGGTGGGCCGCG
AGCTTCATCAACAGCAGCAGCAGAGGTCGGGGCAGCGGGGGGAGATGGGC
AGCAGCAGCAGCAACAGCAAAACGGAGGAGGCCAGATGTCCGACACAACA
ACTACAGTTAGAAGCAGCACCACCAACAACGGCAGAGGCCTTATGACACG
CCGACAGGGCGACGGGCAAGGCAGTGGAAACAATTGGGGTGGGAACGACG
AAGAGGAGGATGGGCAAGGGGAAGAGCGCCCGTGGGTGCCAGGGGAGGAA
CTAAGGTATTGGGCCGTGACTCGAACACTGCGTCTCGCACTCTTCGTGGC
GTTCGTGGGCTTGGTACGCTCTGTCTTATCGTCGCAGGCCATATTCTACC
TCGTCCTGTGGGTGGCGTCTCTGACGACCATGGCCTCGATGACTTACCAA
CGTGTGCGGGAACGAGGCCTGCTCACCTACCTGCCCCCCTCGACCCAAGA
ACTCCTCCTGCAGACCTCGCTGCTGGACTGGCTCCTCGACACATCCATGG
CTGATCGTCTGAAGCCATATGCCGTCATCGGGATGGGATTGAATGAGGAG
GAACGCTCCTTTCTCATCAGCAGTCTTCCTCCACCGGAGCAACGAGCTTT
GACGGCGCCTGGTTTATTGAACACCTTGCCGGCTTCCGTGCAAAGCATGC
TCCTGCCACGCGGTGGTTGCAGCGATGCCGGTGGCATGCTCATGTCAGGA
GGGAACGCATGTGTACCGGCAACACCAGCTGCGGCATGTATCGCGACTGC
TGCTTCTGCTGGAGGTGGAGGAGAGGGGAGGGAAGGATGGCGACATCGCA
TTGAGGAGATCAGTGAGATGCAAGCCGCGGAGATGACCCGTCGACGACTA
CAAGAAATGGACGAGCGACGACAGCGGGAGGAAGGGAGGGAGGGAGAGGA
GGAAGCGGAGGAAGTGATGACGGCATCTGAGACAGACGAAGAGGACGAGT
ACCTGGACGAGCAGGAGGACGGGGGGGAGAGCGGGCGGAGGAGTAGTAAT
CGGATGACGCATCAGTTGCCGCGACAGGTGGGCATGGCTATGGGCAGAAA
TCCGCAGCGGCGAACACCACAGCAAGGCAACGGCCTCCGGCCGGTTTTTC
CCCTCTCCTCTACCTCCTACCACCACCACCAGCAAAACAGCAGCAGCAGG
AACACCCGCACCCTCACCACCGACACTACCACCCAATCTCCTCCTCCTCC
TCCTCTTTCTCGGCCAGTGTCAGAAAGCTGGCCCGCTCCCGGGGAAGTTG
AAGATGTCGCTGCCTACGTTCTTCAACGGCGCCTCCGCCGCGCCTGGGAG
CAAGCGGTGCGAGGAAGCGCAGATGCGATCGTCAGTGGAGTAACAGCCAG
CTTGAGAAGGCAATTGAGGGATAGACGGCAGGGGTTAGTATACGGAGGGG
TGGCCTTGGCGGGGGGGGCGGTAGTGGCGCAGATTTGGCGAGGGAGGGGA
GGGGGGGCGGGAGGGGTAGTGCAGCGGTATGGGCGGATGGCAGTTTTAGC
AGGGACGGTGGTCTTGGCTTTGCATGATGCATATTTTGCCTCAAAGGAGG
AGGAGGAAGAGGGGGAGGAGGAGGAGGAGGAAAGTGCAGAGGGATTATGG
GAGGAGGAGGAGGGCGAGGAGGGCTTGCTTGGCGCTGATTTTGCCGCTGG
TGTGAGCATGGGCCAACAACGACGAGGACGAGGACGAGGACAAGGACGAC
CTCGACAACAGCAGCCTCGGGTATGGATGCAGTGGGGGGCTTTCTTTTTC
CTCCTCCTCCTCATTCGCACCGGTCGCCTGGCGCCGATATTGCGGCGTTT
GCGGGCGGCCTTTCCGGCTTCCTTCCCCTCGTCCTCCTCGTCTTCCTCCT
CCTCCTCCTTGCTGTTGGGTGCGAGCGGACGGAGGTAGACATAGGGAATG
ATAAATATTGGATTCGTATGTATGTGTAGGTGGGAAGATGTGAATAATCA
AAAGAAACGACACGACAGCTTTTGCCGTTACGCGCATTGAGGGTGCTTCC
CAACCATGCCGTCTGCAGTATGTGCCTGCCGTGACCCAGCGAGTCACCCG
AGCAATCAAAGTATTTTCAGGCGAGGGAGAAAGGAAAAGACGAGCTCCAC
TTCGCACAGGCGTGGCCCTCGTTTGGGGGCAACAAAAGAAAGAAAGAGGG
AGACGCGCGTTCAGCGAGAC back to topCoding sequence (CDS) from alignment at scaffold_1:1292796..1295015+ >mRNA_1708 ID=mRNA_1708|Name=jgi.p|Nanoce1779_2|627006|organism=Nannochloropsis oceanica|type=CDS|length=1938bp|location=Sequence derived from alignment at scaffold_1:1292796..1295015+ (Nannochloropsis oceanica) ATGTCACAATGCAAGCGGCTCCTAGACGATTCGGGAGACGGTGGGCCGCG AGCTTCATCAACAGCAGCAGCAGAGGTCGGGGCAGCGGGGGGAGATGGGC AGCAGCAGCAGCAACAGCAAAACGGAGGAGGCCAGATGTCCGACACAACA ACTACAGTTAGAAGCAGCACCACCAACAACGGCAGAGGCCTTATGACACG CCGACAGGGCGACGGGCAAGGCAGTGGAAACAATTGGGGTGGGAACGACG AAGAGGAGGATGGGCAAGGGGAAGAGCGCCCGTGGGTGCCAGGGGAGGAA CTAAGGTATTGGGCCGTGACTCGAACACTGCGTCTCGCACTCTTCGTGGC GTTCGTGGGCTTGGTACGCTCTGTCTTATCGTCGCAGGCCATATTCTACC TCGTCCTGTGGGTGGCGTCTCTGACGACCATGGCCTCGATGACTTACCAA CGTGTGCGGGAACGAGGCCTGCTCACCTACCTGCCCCCCTCGACCCAAGA ACTCCTCCTGCAGACCTCGCTGCTGGACTGGCTCCTCGACACATCCATGG CTGATCGTCTGAAGCCATATGCCGTCATCGGGATGGGATTGAATGAGGAG GAACGCTCCTTTCTCATCAGCAGTCTTCCTCCACCGGAGCAACGAGCTTT GACGGCGCCTGGTTTATTGAACACCTTGCCGGCTTCCGTGCAAAGCATGC TCCTGCCACGCGGTGGTTGCAGCGATGCCGGTGGCATGCTCATGTCAGGA GGGAACGCATGTGTACCGGCAACACCAGCTGCGGCATGTATCGCGACTGC TGCTTCTGCTGGAGGTGGAGGAGAGGGGAGGGAAGGATGGCGACATCGCA TTGAGGAGATCAGTGAGATGCAAGCCGCGGAGATGACCCGTCGACGACTA CAAGAAATGGACGAGCGACGACAGCGGGAGGAAGGGAGGGAGGGAGAGGA GGAAGCGGAGGAAGTGATGACGGCATCTGAGACAGACGAAGAGGACGAGT ACCTGGACGAGCAGGAGGACGGGGGGGAGAGCGGGCGGAGGAGTAGTAAT CGGATGACGCATCAGTTGCCGCGACAGGTGGGCATGGCTATGGGCAGAAA TCCGCAGCGGCGAACACCACAGCAAGGCAACGGCCTCCGGCCGGTTTTTC CCCTCTCCTCTACCTCCTACCACCACCACCAGCAAAACAGCAGCAGCAGG AACACCCGCACCCTCACCACCGACACTACCACCCAATCTCCTCCTCCTCC TCCTCTTTCTCGGCCAGTGTCAGAAAGCTGGCCCGCTCCCGGGGAAGTTG AAGATGTCGCTGCCTACGTTCTTCAACGGCGCCTCCGCCGCGCCTGGGAG CAAGCGGTGCGAGGAAGCGCAGATGCGATCGTCAGTGGAGTAACAGCCAG CTTGAGAAGGCAATTGAGGGATAGACGGCAGGGGTTAGTATACGGAGGGG TGGCCTTGGCGGGGGGGGCGGTAGTGGCGCAGATTTGGCGAGGGAGGGGA GGGGGGGCGGGAGGGGTAGTGCAGCGGTATGGGCGGATGGCAGTTTTAGC AGGGACGGTGGTCTTGGCTTTGCATGATGCATATTTTGCCTCAAAGGAGG AGGAGGAAGAGGGGGAGGAGGAGGAGGAGGAAAGTGCAGAGGGATTATGG GAGGAGGAGGAGGGCGAGGAGGGCTTGCTTGGCGCTGATTTTGCCGCTGG TGTGAGCATGGGCCAACAACGACGAGGACGAGGACGAGGACAAGGACGAC CTCGACAACAGCAGCCTCGGGTATGGATGCAGTGGGGGGCTTTCTTTTTC CTCCTCCTCCTCATTCGCACCGGTCGCCTGGCGCCGATATTGCGGCGTTT GCGGGCGGCCTTTCCGGCTTCCTTCCCCTCGTCCTCCTCGTCTTCCTCCT CCTCCTCCTTGCTGTTGGGTGCGAGCGGACGGAGGTAG back to top
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