jgi.p|Nanoce1779_2|541923, mRNA_4542 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|541923
Unique NamemRNA_4542
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2347
Alignment locationscaffold_10:883572..885966 -

Link to JBrowse

Properties
Property NameValue
TranscriptId542009
TrackFilteredModels2
ProteinId541923
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:883572..885966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|541923gene_4542Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|541923mRNA_4542-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4542CDS_4542Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4542 ID=mRNA_4542|Name=jgi.p|Nanoce1779_2|541923|organism=Nannochloropsis oceanica|type=mRNA|length=2347bp
GAGCTGCGGGAGGGAGGGAAGGAGGAGACGGTCGACAGCACGAACGTACG
GGTGTACCTCAATCTGGTCACGCGGCATTTCCTAATTGAGAGCATTCAGC
CCTCCCTCAAGGCACTGAAAGAGGGATTGCTTGACGTCCTCCGCCCCCCC
CTTACCCGGTCTCTCGCCCTCTTCTCCCCCATAGAGCTTCGCGCCCTGCT
GTGTGCGGAGGGGGGGGAGGAGGAAGAGGAGGAGTGGACCGAGGAGCGGA
TCGGGAATAGCCTGGTGTGTAAGCACGGGTATCACCGATCAGCCCCTCAG
ATACAGTGGCTGGTCAGGGTGTTGGCATCGTTGGAGAGGGAAGAGAGGAA
GAAGTTTTTGATGTTTGTGTGTGGCACACCCCGTTTGCCTATTGGTGGCT
TTGCGGCCTTGAGGCCGTTACTGACGGTGGGGGGGGCGTTGGCAGCAGAC
TTGTACTTACCGAGCTGTAGCACGTGTCAGGTGTACTTAAAGCTGCCTGC
ATACAGCTCCGAGGAGGTGCTGCGGGAGAAGTTGAAGCAGGCGATGACGT
TGGGACAGGAGCACTTTGCCTTAGATTAGATAGTCGTTTCCTCCCTTCCT
GCTCCCCTCCTTTTCTTCCTTGTCCATGTGACGGTGCCCGTTCCCTTATT
CCCGGGAAACGGACGAAGAAGAGAGAGAGGGACAGAAGGAAGGGGGATTG
TTGATGGTGGACGAGAGAGGGACGATTGAGAACCAGTGCCAGCAAGTGGA
CTGAAATACGATAAGGCATACTAGAAATAGAAAGGGAGAGACAAGCAAGT
AAGTGGGCATATAGGGAATTAAAATGAGGCTAGGCTAGATACAAGGGAAA
CACAGAATGAAAGTGATTGCCAGCTGATTATCTCAGCAGCAGCCGCTGCT
GCTGCGGCTGCAGGAGGAGGATTTGAATGAAAGAACATGGAAAGCATGTG
CCATTGTACATGTAATATACATACAAAGGGGTTACATGAGTATGCGCGCG
GCAGGGGATAGTGTGAAGAAATAGATAGGAAGATGAAAATAATAGAAGGA
CAAAGGCGAGGATTGATCAAGACTTGTGGCAAAACACGTCCAAAATGTCA
CGATATGAAGCCGGACAAAATATGGTAAAAAAAGAAATAGCAGCCATAAA
CATACATGCGAAATACTTTCGTACTTGTATTTTTTGGCGTACCTTCCTTT
TTACTTAGACATGCTGGTGACCTGTGGAACTGAGAAAAACAGGGGGGTTG
AGGAGGTTATAGTAAAAATGCGAGCCAGACTCTGCAAATATCACGACAGC
ATCAAGACCACCTTAGCTCTTAAATCTTCTTCTGATTGTCCTGGTTTGGT
CACCGCCTTCGCTGACATTATCTGTGCACACTTGGTGAGGGACGGGGCTT
TTTAATAAGGGAGCATAACGAAAACTGATAAAGCCGAATCGCCGATCAAC
GCCTCGCTTTCTCCATCTTCGTCTCATCAGATGGACACTTTGTGAAGGCA
TGCACATGCCAGATACAGCGATGTGACACCATATCTAGCCCCAGAAACCC
TTGGTCGAGTCTATTTCTCTTTACGGATAAACAAATTTCGTTTTCTCAGG
CTCTCACAACGACAACCCCACAGAACATCAGATGCCACGCTCGAGACCCT
ACTTCTACGGCTTCTACTCCTATCCATCCTGCGTCCAGCACCATGGAATT
TCTCTCCCAGCTCCTGGCCCCAAGACTGCCCAAAATCGCCAGCAATAAAG
AGGACATCTCGCAGCGATCGCCAGCACGTAGGACCACCGCCAGCAGGAGC
GACACTAGCCCCAACCAAGATGACAACGGAGTTGACGAGTCCACGCCACC
GACGGTCGAATATGGGTTCAGCGCCGATTCAAAGGGGCAGCGCTTACAAG
CACTGTGGAAACCTTTTGAAGAGGCGTTTTCCGACATGGCCTTGTCTGTA
GAAGATAAGCTGACAGTGGTTGTGCCATTTGCCGATGCTTTCGTAGCGGT
ATATGATGAGCAGCTACCGCACATGTGGCTTGCCCCGAAAACCAGTCAAC
GTAAAAATAAAGGGGGTGGAGAGGAGGATGAAAATGTGCAGCAACCGCAG
ATTAGGACCGCGCCTATCGGGGGGCAGCGACGAGGCGCAGAAGTGGACGA
CGAGGGAGGAGACGTCGCGGACAAACCCAACCTCCCGGCTGCTACTGACT
TAATCATTCCACCTTCCGTGCACGACGTGAAGGGCCACCCGAAGCTCCTG
ACTGTCCTGGTTGGGACATTCCTAATCGACATTCTAATACGACCCCAAAG
CAGAGAGACTACAGCAGCAGCAGCAGCAGCAGCGACAGCAGCAGCAG
back to top

protein sequence of jgi.p|Nanoce1779_2|541923

>mRNA_4542-protein ID=mRNA_4542-protein|Name=jgi.p|Nanoce1779_2|541923|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MEFLSQLLAPRLPKIASNKEDISQRSPARRTTASRSDTSPNQDDNGVDES
TPPTVEYGFSADSKGQRLQALWKPFEEAFSDMALSVEDKLTVVVPFADAF
VAVYDEQLPHMWLAPKTSQRKNKGGGEEDENVQQPQIRTAPIGGQRRGAE
VDDEGGDVADKPNLPAATDLIIPPSVHDVKGHPKLLTVLVGTFLIDILIR
PQSRETTAAAAAAATAAA
back to top

mRNA from alignment at scaffold_10:883572..885966-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4542 ID=mRNA_4542|Name=jgi.p|Nanoce1779_2|541923|organism=Nannochloropsis oceanica|type=mRNA|length=2395bp|location=Sequence derived from alignment at scaffold_10:883572..885966- (Nannochloropsis oceanica)
GAGCTGCGGGAGGGAGGGAAGGAGGAGACGGTCGACAGCACGAACGTACG
GGTGTACCTCAATCTGGTCACGCGGCATTTCCTAATTGAGAGCATTCAGC
CCTCCCTCAAGGCACTGAAAGAGGGATTGCTTGACGTCCTCCGCCCCCCC
CTTACCCGGTCTCTCGCCCTCTTCTCCCCCATAGAGCTTCGCGCCCTGCT
GTGTGCGGAGGGGGGGGAGGAGGAAGAGGAGGAGTGGACCGAGGAGCGGA
TCGGGAATAGCCTGGTGTGTAAGCACGGGTATCACCGATCAGCCCCTCAG
ATACAGTGGCTGGTCAGGGTGTTGGCATCGTTGGAGAGGGAAGAGAGGAA
GAAGTTTTTGATGTTTGTGTGTGGCACACCCCGTTTGCCTATTGGTGGCT
TTGCGGCCTTGAGGCCGTTACTGACGGTGGTGAGAAAAGAGGTCCCCTCG
ACGGGTGGGAGGGGGGAAAAGAGGGAGGGGGGGGCGTTGGCAGCAGACTT
GTACTTACCGAGCTGTAGCACGTGTCAGGTGTACTTAAAGCTGCCTGCAT
ACAGCTCCGAGGAGGTGCTGCGGGAGAAGTTGAAGCAGGCGATGACGTTG
GGACAGGAGCACTTTGCCTTAGATTAGATAGTCGTTTCCTCCCTTCCTGC
TCCCCTCCTTTTCTTCCTTGTCCATGTGACGGTGCCCGTTCCCTTATTCC
CGGGAAACGGACGAAGAAGAGAGAGAGGGACAGAAGGAAGGGGGATTGTT
GATGGTGGACGAGAGAGGGACGATTGAGAACCAGTGCCAGCAAGTGGACT
GAAATACGATAAGGCATACTAGAAATAGAAAGGGAGAGACAAGCAAGTAA
GTGGGCATATAGGGAATTAAAATGAGGCTAGGCTAGATACAAGGGAAACA
CAGAATGAAAGTGATTGCCAGCTGATTATCTCAGCAGCAGCCGCTGCTGC
TGCGGCTGCAGGAGGAGGATTTGAATGAAAGAACATGGAAAGCATGTGCC
ATTGTACATGTAATATACATACAAAGGGGTTACATGAGTATGCGCGCGGC
AGGGGATAGTGTGAAGAAATAGATAGGAAGATGAAAATAATAGAAGGACA
AAGGCGAGGATTGATCAAGACTTGTGGCAAAACACGTCCAAAATGTCACG
ATATGAAGCCGGACAAAATATGGTAAAAAAAGAAATAGCAGCCATAAACA
TACATGCGAAATACTTTCGTACTTGTATTTTTTGGCGTACCTTCCTTTTT
ACTTAGACATGCTGGTGACCTGTGGAACTGAGAAAAACAGGGGGGTTGAG
GAGGTTATAGTAAAAATGCGAGCCAGACTCTGCAAATATCACGACAGCAT
CAAGACCACCTTAGCTCTTAAATCTTCTTCTGATTGTCCTGGTTTGGTCA
CCGCCTTCGCTGACATTATCTGTGCACACTTGGTGAGGGACGGGGCTTTT
TAATAAGGGAGCATAACGAAAACTGATAAAGCCGAATCGCCGATCAACGC
CTCGCTTTCTCCATCTTCGTCTCATCAGATGGACACTTTGTGAAGGCATG
CACATGCCAGATACAGCGATGTGACACCATATCTAGCCCCAGAAACCCTT
GGTCGAGTCTATTTCTCTTTACGGATAAACAAATTTCGTTTTCTCAGGCT
CTCACAACGACAACCCCACAGAACATCAGATGCCACGCTCGAGACCCTAC
TTCTACGGCTTCTACTCCTATCCATCCTGCGTCCAGCACCATGGAATTTC
TCTCCCAGCTCCTGGCCCCAAGACTGCCCAAAATCGCCAGCAATAAAGAG
GACATCTCGCAGCGATCGCCAGCACGTAGGACCACCGCCAGCAGGAGCGA
CACTAGCCCCAACCAAGATGACAACGGAGTTGACGAGTCCACGCCACCGA
CGGTCGAATATGGGTTCAGCGCCGATTCAAAGGGGCAGCGCTTACAAGCA
CTGTGGAAACCTTTTGAAGAGGCGTTTTCCGACATGGCCTTGTCTGTAGA
AGATAAGCTGACAGTGGTTGTGCCATTTGCCGATGCTTTCGTAGCGGTAT
ATGATGAGCAGCTACCGCACATGTGGCTTGCCCCGAAAACCAGTCAACGT
AAAAATAAAGGGGGTGGAGAGGAGGATGAAAATGTGCAGCAACCGCAGAT
TAGGACCGCGCCTATCGGGGGGCAGCGACGAGGCGCAGAAGTGGACGACG
AGGGAGGAGACGTCGCGGACAAACCCAACCTCCCGGCTGCTACTGACTTA
ATCATTCCACCTTCCGTGCACGACGTGAAGGGCCACCCGAAGCTCCTGAC
TGTCCTGGTTGGGACATTCCTAATCGACATTCTAATACGACCCCAAAGCA
GAGAGACTACAGCAGCAGCAGCAGCAGCAGCGACAGCAGCAGCAG
back to top

Coding sequence (CDS) from alignment at scaffold_10:883572..885966-

>mRNA_4542 ID=mRNA_4542|Name=jgi.p|Nanoce1779_2|541923|organism=Nannochloropsis oceanica|type=CDS|length=654bp|location=Sequence derived from alignment at scaffold_10:883572..885966- (Nannochloropsis oceanica)
ATGGAATTTCTCTCCCAGCTCCTGGCCCCAAGACTGCCCAAAATCGCCAG
CAATAAAGAGGACATCTCGCAGCGATCGCCAGCACGTAGGACCACCGCCA
GCAGGAGCGACACTAGCCCCAACCAAGATGACAACGGAGTTGACGAGTCC
ACGCCACCGACGGTCGAATATGGGTTCAGCGCCGATTCAAAGGGGCAGCG
CTTACAAGCACTGTGGAAACCTTTTGAAGAGGCGTTTTCCGACATGGCCT
TGTCTGTAGAAGATAAGCTGACAGTGGTTGTGCCATTTGCCGATGCTTTC
GTAGCGGTATATGATGAGCAGCTACCGCACATGTGGCTTGCCCCGAAAAC
CAGTCAACGTAAAAATAAAGGGGGTGGAGAGGAGGATGAAAATGTGCAGC
AACCGCAGATTAGGACCGCGCCTATCGGGGGGCAGCGACGAGGCGCAGAA
GTGGACGACGAGGGAGGAGACGTCGCGGACAAACCCAACCTCCCGGCTGC
TACTGACTTAATCATTCCACCTTCCGTGCACGACGTGAAGGGCCACCCGA
AGCTCCTGACTGTCCTGGTTGGGACATTCCTAATCGACATTCTAATACGA
CCCCAAAGCAGAGAGACTACAGCAGCAGCAGCAGCAGCAGCGACAGCAGC
AGCA
back to top
Synonyms
Publications