jgi.p|Nanoce1779_2|589195, mRNA_4460 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589195
Unique NamemRNA_4460
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1325
Alignment locationscaffold_10:650697..652087 -

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Properties
Property NameValue
TranscriptId589281
TrackFilteredModels2
ProteinId589195
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:650697..652087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589195gene_4460Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589195mRNA_4460-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4460CDS_4460Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4460 ID=mRNA_4460|Name=jgi.p|Nanoce1779_2|589195|organism=Nannochloropsis oceanica|type=mRNA|length=1325bp
AGAGACGAAATACTTGGCTACGCACAAACTCTGCCAGCACTGTCTTGATT
ACAACAGAAAGATGATGCCGTCACAAGCTGCCACTGAGCAAACCGACAGA
CAAGCCCTTCTGATTGAGACCATCGACCTCGACGCCTACTTTTGCACCGC
GACTCCCTCCTCTTCCTCTCGCCGTCAGGAGGAGTGTGTAAAGGCGGCCC
GAAGCCTTCAATCCACCGGTTGCCTGTACGTCCGCGACTCCCGTGTGCTT
CATGCCGACAACGAGGCTTTTCTCGACTTGCTCGAGAGGTACTTTGCCTC
ATCCGACGGCATTCGTGACGCCCGCCCCGAGCTCCATTACCAAGTGGGAG
TCACGCCTGCTATGAGCGAATGGCCCCGCAACAACTGCTCGCGTGCCGCC
GCCCTCCCTCCCGCCCACCGTCCTGTCACCCTCTGCCCCCCCGAGGCGGA
CCCCAAATGGCGATACTTCTGGCGGGTCGGGCCTCTCCCTCCAACCCCCT
CCCGATTCCCGCAGCTGAATACCGCTCCTGTCATCCCCCCCGACTTTCCC
GAGTGGAGCCAGATCATGGACATGTGGGGCCGGAAAATGCTAGCGGCCGT
CAGCGGCGTGGCAGCAGCACTAGCAGAGGGCTTTGGCCTACCTGCGGATG
CCTTCACCAAGCGGATGGAGTACGGCCCGCATTTGCTCGCGCCCACAGGA
TCCAATTTCGGGGGCAGATTCGGGAAAGTGGGCACGGTGCTTGCAGGCTA
TCACTACGACCTCAACTTTTTGACGATCCATGGCAAGAGCCGCTTCCCAG
GGCTATTTGTTTGGCTAAGGGATGGGCGGAAGGTGGCCGTGAAGGTGCCG
GAGGGGTGCTTGTTGGTGCAGGCGGGGAAGCAGTGCGAGTACTTGACGGG
TGGAAGAATCTTGGCGGGTTTCCACGAAGTGGTGGTGGCACCAGAGACCA
GGGAGGTGATAGAGAGGAGGAGGAAGGAGGGGGCGTCGTTGTGGCGGGTG
TCATCGACGTTGTTCAGTCATATTGCCTCGGACGAGGTATTGAGGCCCTT
GTTGAAGAAGGAGGAAGGGGAGGAGAGCGAGGGCGAGAGGGAGGACGGAG
AGAAGAGTGAATACCCCCTGGCTGGGGAGCAAGTTCTATCGGAATTGCGC
GCCATCAAGCTGGGAAGATAGCGAGCAGCTGACATGGACATTTGTAGTAT
ATCTTTGGTATCGAAAGTAATCGTACCAAGCAAGTGGCAGAAAGCCATCT
TCATCCAGCGACCAAAGGATGAAAAAAAATCGCAAAAAACTGTCTGCACT
TCATAGCTCTTCTTTCGAATACATA
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protein sequence of jgi.p|Nanoce1779_2|589195

>mRNA_4460-protein ID=mRNA_4460-protein|Name=jgi.p|Nanoce1779_2|589195|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MMPSQAATEQTDRQALLIETIDLDAYFCTATPSSSSRRQEECVKAARSLQ
STGCLYVRDSRVLHADNEAFLDLLERYFASSDGIRDARPELHYQVGVTPA
MSEWPRNNCSRAAALPPAHRPVTLCPPEADPKWRYFWRVGPLPPTPSRFP
QLNTAPVIPPDFPEWSQIMDMWGRKMLAAVSGVAAALAEGFGLPADAFTK
RMEYGPHLLAPTGSNFGGRFGKVGTVLAGYHYDLNFLTIHGKSRFPGLFV
WLRDGRKVAVKVPEGCLLVQAGKQCEYLTGGRILAGFHEVVVAPETREVI
ERRRKEGASLWRVSSTLFSHIASDEVLRPLLKKEEGEESEGEREDGEKSE
YPLAGEQVLSELRAIKLGR*
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mRNA from alignment at scaffold_10:650697..652087-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4460 ID=mRNA_4460|Name=jgi.p|Nanoce1779_2|589195|organism=Nannochloropsis oceanica|type=mRNA|length=1391bp|location=Sequence derived from alignment at scaffold_10:650697..652087- (Nannochloropsis oceanica)
AGAGACGAAATACTTGGCTACGCACAAACTCTGCCAGCACTGTCTTGATT
ACAACAGAAAGATGATGCCGTCACAAGCTGCCACTGAGGTACGAAAGGAG
CGGCTAATTCCCTCTAGCAGTACTTCCCACCCCCACTCCTCCTAAACCCT
CCAGCAAACCGACAGACAAGCCCTTCTGATTGAGACCATCGACCTCGACG
CCTACTTTTGCACCGCGACTCCCTCCTCTTCCTCTCGCCGTCAGGAGGAG
TGTGTAAAGGCGGCCCGAAGCCTTCAATCCACCGGTTGCCTGTACGTCCG
CGACTCCCGTGTGCTTCATGCCGACAACGAGGCTTTTCTCGACTTGCTCG
AGAGGTACTTTGCCTCATCCGACGGCATTCGTGACGCCCGCCCCGAGCTC
CATTACCAAGTGGGAGTCACGCCTGCTATGAGCGAATGGCCCCGCAACAA
CTGCTCGCGTGCCGCCGCCCTCCCTCCCGCCCACCGTCCTGTCACCCTCT
GCCCCCCCGAGGCGGACCCCAAATGGCGATACTTCTGGCGGGTCGGGCCT
CTCCCTCCAACCCCCTCCCGATTCCCGCAGCTGAATACCGCTCCTGTCAT
CCCCCCCGACTTTCCCGAGTGGAGCCAGATCATGGACATGTGGGGCCGGA
AAATGCTAGCGGCCGTCAGCGGCGTGGCAGCAGCACTAGCAGAGGGCTTT
GGCCTACCTGCGGATGCCTTCACCAAGCGGATGGAGTACGGCCCGCATTT
GCTCGCGCCCACAGGATCCAATTTCGGGGGCAGATTCGGGAAAGTGGGCA
CGGTGCTTGCAGGCTATCACTACGACCTCAACTTTTTGACGATCCATGGC
AAGAGCCGCTTCCCAGGGCTATTTGTTTGGCTAAGGGATGGGCGGAAGGT
GGCCGTGAAGGTGCCGGAGGGGTGCTTGTTGGTGCAGGCGGGGAAGCAGT
GCGAGTACTTGACGGGTGGAAGAATCTTGGCGGGTTTCCACGAAGTGGTG
GTGGCACCAGAGACCAGGGAGGTGATAGAGAGGAGGAGGAAGGAGGGGGC
GTCGTTGTGGCGGGTGTCATCGACGTTGTTCAGTCATATTGCCTCGGACG
AGGTATTGAGGCCCTTGTTGAAGAAGGAGGAAGGGGAGGAGAGCGAGGGC
GAGAGGGAGGACGGAGAGAAGAGTGAATACCCCCTGGCTGGGGAGCAAGT
TCTATCGGAATTGCGCGCCATCAAGCTGGGAAGATAGCGAGCAGCTGACA
TGGACATTTGTAGTATATCTTTGGTATCGAAAGTAATCGTACCAAGCAAG
TGGCAGAAAGCCATCTTCATCCAGCGACCAAAGGATGAAAAAAAATCGCA
AAAAACTGTCTGCACTTCATAGCTCTTCTTTCGAATACATA
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Coding sequence (CDS) from alignment at scaffold_10:650697..652087-

>mRNA_4460 ID=mRNA_4460|Name=jgi.p|Nanoce1779_2|589195|organism=Nannochloropsis oceanica|type=CDS|length=2220bp|location=Sequence derived from alignment at scaffold_10:650697..652087- (Nannochloropsis oceanica)
CAAACCGACAGACAAGCCCTTCTGATTGAGACCATCGACCTCGACGCCTA
CTTTTGCACCGCGACTCCCTCCTCTTCCTCTCGCCGTCAGGAGGAGTGTG
TAAAGGCGGCCCGAAGCCTTCAATCCACCGGTTGCCTGTACGTCCGCGAC
TCCCGTGTGCTTCATGCCGACAACGAGGCTTTTCTCGACTTGCTCGAGAG
GTACTTTGCCTCATCCGACGGCATTCGTGACGCCCGCCCCGAGCTCCATT
ACCAAGTGGGAGTCACGCCTGCTATGAGCGAATGGCCCCGCAACAACTGC
TCGCGTGCCGCCGCCCTCCCTCCCGCCCACCGTCCTGTCACCCTCTGCCC
CCCCGAGGCGGACCCCAAATGGCGATACTTCTGGCGGGTCGGGCCTCTCC
CTCCAACCCCCTCCCGATTCCCGCAGCTGAATACCGCTCCTGTCATCCCC
CCCGACTTTCCCGAGTGGAGCCAGATCATGGACATGTGGGGCCGGAAAAT
GCTAGCGGCCGTCAGCGGCGTGGCAGCAGCACTAGCAGAGGGCTTTGGCC
TACCTGCGGATGCCTTCACCAAGCGGATGGAGTACGGCCCGCATTTGCTC
GCGCCCACAGGATCCAATTTCGGGGGCAGATTCGGGAAAGTGGGCACGGT
GCTTGCAGGCTATCACTACGACCTCAACTTTTTGACGATCCATGGCAAGA
GCCGCTTCCCAGGGCTATTTGTTTGGCTAAGGGATGGGCGGAAGGTGGCC
GTGAAGGTGCCGGAGGGGTGCTTGTTGGTGCAGGCGGGGAAGCAGTGCGA
GTACTTGACGGGTGGAAGAATCTTGGCGGGTTTCCACGAAGTGGTGGTGG
CACCAGAGACCAGGGAGGTGATAGAGAGGAGGAGGAAGGAGGGGGCGTCG
TTGTGGCGGGTGTCATCGACGTTGTTCAGTCATATTGCCTCGGACGAGGT
ATTGAGGCCCTTGTTGAAGAAGGAGGAAGGGGAGGAGAGCGAGGGCGAGA
GGGAGGACGGAGAGAAGAGTGAATACCCCCTGGCTGGGGAGCAAGTTCTA
TCGGAATTGCGCGCCATCAAGCTGGGAAGATAGATGATGCCGTCACAAGC
TGCCACTGAGCAAACCGACAGACAAGCCCTTCTGATTGAGACCATCGACC
TCGACGCCTACTTTTGCACCGCGACTCCCTCCTCTTCCTCTCGCCGTCAG
GAGGAGTGTGTAAAGGCGGCCCGAAGCCTTCAATCCACCGGTTGCCTGTA
CGTCCGCGACTCCCGTGTGCTTCATGCCGACAACGAGGCTTTTCTCGACT
TGCTCGAGAGGTACTTTGCCTCATCCGACGGCATTCGTGACGCCCGCCCC
GAGCTCCATTACCAAGTGGGAGTCACGCCTGCTATGAGCGAATGGCCCCG
CAACAACTGCTCGCGTGCCGCCGCCCTCCCTCCCGCCCACCGTCCTGTCA
CCCTCTGCCCCCCCGAGGCGGACCCCAAATGGCGATACTTCTGGCGGGTC
GGGCCTCTCCCTCCAACCCCCTCCCGATTCCCGCAGCTGAATACCGCTCC
TGTCATCCCCCCCGACTTTCCCGAGTGGAGCCAGATCATGGACATGTGGG
GCCGGAAAATGCTAGCGGCCGTCAGCGGCGTGGCAGCAGCACTAGCAGAG
GGCTTTGGCCTACCTGCGGATGCCTTCACCAAGCGGATGGAGTACGGCCC
GCATTTGCTCGCGCCCACAGGATCCAATTTCGGGGGCAGATTCGGGAAAG
TGGGCACGGTGCTTGCAGGCTATCACTACGACCTCAACTTTTTGACGATC
CATGGCAAGAGCCGCTTCCCAGGGCTATTTGTTTGGCTAAGGGATGGGCG
GAAGGTGGCCGTGAAGGTGCCGGAGGGGTGCTTGTTGGTGCAGGCGGGGA
AGCAGTGCGAGTACTTGACGGGTGGAAGAATCTTGGCGGGTTTCCACGAA
GTGGTGGTGGCACCAGAGACCAGGGAGGTGATAGAGAGGAGGAGGAAGGA
GGGGGCGTCGTTGTGGCGGGTGTCATCGACGTTGTTCAGTCATATTGCCT
CGGACGAGGTATTGAGGCCCTTGTTGAAGAAGGAGGAAGGGGAGGAGAGC
GAGGGCGAGAGGGAGGACGGAGAGAAGAGTGAATACCCCCTGGCTGGGGA
GCAAGTTCTATCGGAATTGCGCGCCATCAAGCTGGGAAGATAGATGATGC
CGTCACAAGCTGCCACTGAG
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Synonyms
Publications