jgi.p|Nanoce1779_2|589461, mRNA_4531 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589461
Unique NamemRNA_4531
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length936
Alignment locationscaffold_10:845466..846401 +

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Properties
Property NameValue
TranscriptId589547
TrackFilteredModels2
ProteinId589461
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:845466..846401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589461gene_4531Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589461mRNA_4531-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4531CDS_4531Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4531 ID=mRNA_4531|Name=jgi.p|Nanoce1779_2|589461|organism=Nannochloropsis oceanica|type=mRNA|length=936bp
CCCGCCTCTTCGCCTCCCTCTCAATTTCCTCCGCCAAGCCCTTCACCTTC
TCCCGCAACGCCGCCGCCGTCACTCCTCCCCCTCCTCCTCCTCCTCCCTT
TTCTTGCGTCTGCAGCCGCGCCGCTACCTGCAAGATGCGTCGAGCGTCTA
GTCTGGCCAAGGAAAACTCACCTCCTTTACTCAGCGCTTTGGACCGTATC
TCATATGCCAGCACCAGCAGTCGTCTCCATTCCTCGACCCCCACCTCCTC
CCCCTTTCCCTCCCCGCATTTCTCCCCTTCTCCCGTCTTGGGGAAAACAA
ATGGCTGCAGCACCGCTATCGCCAATGAGACACTCATCAAGGCCTCGGAC
AGACGGCCCATGTGACTCTTCAAATAACACCGAGCGCTGTTCAAGAGGAC
CTTGACCTGGGCTACTTGGAGGGAGGGAAGGAGGGCGAGGGGCAGAAGGC
GGGAAATGGGGACATCGTCTTCTTCTTCTCCGTCCTCGTCGTCTTTCTCT
TGTCCGTTTCCGTGGGCTCTGCTACTGCTACTGTTGCTGCTGCTGCTATC
GTCGAAGAGTACATCCACTGTTCGGGATCTTTCGTCCACATCGGCCAGGG
TCGCGCGTCTCACTTCCATTTGCTTTTTCCTGCTACCGCTGCTCTCATCT
CCTTGTGCTGGTGCCGCAGCAGTGACTAGGACTGCAGCGCCTGGTTTAGG
TAGGGAGGGAGGGAGGAAGGGAGGGAGGGGGGTTTGGGTTGACCACACTA
CTCTTTTCTTTCTCTTTCACGCCTCTTCTAGCCACAAATGCAACCTGAGC
TCCACACGCCTAACTTAAGTCATTGGATTCCTCCCGACAACATACACACA
CGCATACATCCTCATCCCATCGTATCCCTCTTCTCTCTTTTCTAATCCCC
TCGTAAGCACGCACCAATCCGCAGTGCTCCCTTTCC
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protein sequence of jgi.p|Nanoce1779_2|589461

>mRNA_4531-protein ID=mRNA_4531-protein|Name=jgi.p|Nanoce1779_2|589461|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MGTSSSSSPSSSSFSCPFPWALLLLLLLLLLSSKSTSTVRDLSSTSARVA
RLTSICFFLLPLLSSPCAGAAAVTRTAAPGLGREGGRKGGRGVWVDHTTL
FFLFHASSSHKCNLSSTRLT*
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mRNA from alignment at scaffold_10:845466..846401+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4531 ID=mRNA_4531|Name=jgi.p|Nanoce1779_2|589461|organism=Nannochloropsis oceanica|type=mRNA|length=936bp|location=Sequence derived from alignment at scaffold_10:845466..846401+ (Nannochloropsis oceanica)
CCCGCCTCTTCGCCTCCCTCTCAATTTCCTCCGCCAAGCCCTTCACCTTC
TCCCGCAACGCCGCCGCCGTCACTCCTCCCCCTCCTCCTCCTCCTCCCTT
TTCTTGCGTCTGCAGCCGCGCCGCTACCTGCAAGATGCGTCGAGCGTCTA
GTCTGGCCAAGGAAAACTCACCTCCTTTACTCAGCGCTTTGGACCGTATC
TCATATGCCAGCACCAGCAGTCGTCTCCATTCCTCGACCCCCACCTCCTC
CCCCTTTCCCTCCCCGCATTTCTCCCCTTCTCCCGTCTTGGGGAAAACAA
ATGGCTGCAGCACCGCTATCGCCAATGAGACACTCATCAAGGCCTCGGAC
AGACGGCCCATGTGACTCTTCAAATAACACCGAGCGCTGTTCAAGAGGAC
CTTGACCTGGGCTACTTGGAGGGAGGGAAGGAGGGCGAGGGGCAGAAGGC
GGGAAATGGGGACATCGTCTTCTTCTTCTCCGTCCTCGTCGTCTTTCTCT
TGTCCGTTTCCGTGGGCTCTGCTACTGCTACTGTTGCTGCTGCTGCTATC
GTCGAAGAGTACATCCACTGTTCGGGATCTTTCGTCCACATCGGCCAGGG
TCGCGCGTCTCACTTCCATTTGCTTTTTCCTGCTACCGCTGCTCTCATCT
CCTTGTGCTGGTGCCGCAGCAGTGACTAGGACTGCAGCGCCTGGTTTAGG
TAGGGAGGGAGGGAGGAAGGGAGGGAGGGGGGTTTGGGTTGACCACACTA
CTCTTTTCTTTCTCTTTCACGCCTCTTCTAGCCACAAATGCAACCTGAGC
TCCACACGCCTAACTTAAGTCATTGGATTCCTCCCGACAACATACACACA
CGCATACATCCTCATCCCATCGTATCCCTCTTCTCTCTTTTCTAATCCCC
TCGTAAGCACGCACCAATCCGCAGTGCTCCCTTTCC
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Coding sequence (CDS) from alignment at scaffold_10:845466..846401+

>mRNA_4531 ID=mRNA_4531|Name=jgi.p|Nanoce1779_2|589461|organism=Nannochloropsis oceanica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_10:845466..846401+ (Nannochloropsis oceanica)
ATGGGGACATCGTCTTCTTCTTCTCCGTCCTCGTCGTCTTTCTCTTGTCC
GTTTCCGTGGGCTCTGCTACTGCTACTGTTGCTGCTGCTGCTATCGTCGA
AGAGTACATCCACTGTTCGGGATCTTTCGTCCACATCGGCCAGGGTCGCG
CGTCTCACTTCCATTTGCTTTTTCCTGCTACCGCTGCTCTCATCTCCTTG
TGCTGGTGCCGCAGCAGTGACTAGGACTGCAGCGCCTGGTTTAGGTAGGG
AGGGAGGGAGGAAGGGAGGGAGGGGGGTTTGGGTTGACCACACTACTCTT
TTCTTTCTCTTTCACGCCTCTTCTAGCCACAAATGCAACCTGAGCTCCAC
ACGCCTAACTTAA
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Synonyms
Publications