jgi.p|Nanoce1779_2|38171, mRNA_5816 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|38171
Unique NamemRNA_5816
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length813
Alignment locationscaffold_11:637338..638491 +

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Properties
Property NameValue
TranscriptId38257
TrackFilteredModels2
ProteinId38171
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:637338..638491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|38171gene_5816Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|38171mRNA_5816-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5816CDS_5816Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5816 ID=mRNA_5816|Name=jgi.p|Nanoce1779_2|38171|organism=Nannochloropsis oceanica|type=mRNA|length=813bp
AGCACGGGTGCAGTAGTAGTAGCAGCAGCATTGGCGTGGCGGGTCGGGCA
TCATTTTGGACTGCAATCAACAAGCAAACCTGCAGGCTTTCATGGACCAT
GACCACGACGACCCGCTATTTCAGCTGCACAAGCTTCAGCTCTCGACGCC
CTTGCTCGATGAGCCTATTTTGATAAAGTGCATCAAATTTCCACTTGTCT
ACTTGGTGAGTTTGTCCCGGGCGTCTTTACTCAAAGCCCTGTCTCCTCGT
CAGGACATTGAGACCAAACAATTGCAGATAGCGCCTTCGCCTGTCTACCC
CGACATCCTGGAAGTACGGCACGTTCATGCTTTCGAGGCCTTCGATGGGG
AGGCATACCCGAACGAGTGTCACCACCATCCGCAGCATCGCTCTGCAGCG
TTACACTCAGGCCTGGCCCACATACAGGAACAAGACCGCCTAACGCACGT
GAATGGACAGCCCGTATTTTCGATCAAGCAGGTTCAGCACTTGCTTATTC
AAAGCGGGGACGAGGAGGAGATAGTGGCCGTACGGCTACTGCGCAAGGAG
AATCCTCATGCCGAGTACGTAAACATGGATGATCCCTCCACCTCTTCGTC
CTCTTCCTCCATCTCCTCCGGCAGGGGATACGTTGCCCTCGCTAGCTCGG
TCCTTCGGTCTCAAAATCGATGTCTTGCGAAGGGACAACAGAGATAAATT
CAAGGTAGGCGAGCCAGCAGGTGTGTTGATATCAGGACAGAAGCTCAGGG
TCAGAAATGTAGAATATGATGGGAAGGCGACGGCGGCCTGGGTGGCACGA
GGCGGGGTGGTGA
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protein sequence of jgi.p|Nanoce1779_2|38171

>mRNA_5816-protein ID=mRNA_5816-protein|Name=jgi.p|Nanoce1779_2|38171|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MDHDHDDPLFQLHKLQLSTPLLDEPILIKCIKFPLVYLVSLSRASLLKAL
SPRQDIETKQLQIAPSPVYPDILEVRHVHAFEAFDGEAYPNECHHHPQHR
SAALHSGLAHIQEQDRLTHVNGQPVFSIKQVQHLLIQSGDEEEIVAVRLL
RKENPHAEYVNMDDPSTSSSSSSISSGRGYVALASSVLRSQNRCLAKGQQ
R*
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mRNA from alignment at scaffold_11:637338..638491+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5816 ID=mRNA_5816|Name=jgi.p|Nanoce1779_2|38171|organism=Nannochloropsis oceanica|type=mRNA|length=1154bp|location=Sequence derived from alignment at scaffold_11:637338..638491+ (Nannochloropsis oceanica)
AGCACGGGTGCAGTAGTAGTAGCAGCAGCATTGGCGTGGCGGGTCGGGCA
TCATTTTGGACTGCAATCAACAAGCAAACCTGCAGGCTTTCATGGACCAT
GACCACGACGACCCGCTATTTCAGCTGCACAAGCTTCAGCTCTCGACGCC
CTTGCTCGATGAGCCTATTTTGATAAAGTGCATCAAATTTCCACTTGTCT
ACTTGGTGAGTTTGTCCCGGGCGTCTTTACTCAAAGCCCTGTCTCCTCGT
CAGGACATTGAGACCAAACAATTGCAGATAGCGCCTTCGCCTGTCTACCC
CGACATCCTGGAAGTACGGCACGTTCATGCTTTCGAGGCCTTCGATGGGG
AGGCATACCCGAACGAGTGTCACCACCATCCGCAGCATCGCTCTGCAGCG
TTACACTCAGGCCTGGCCCACATACAGGAACAAGACCGCCTAACGCACGT
GAATGGACAGCCCGTATTTTCGATCAAGCAGGTTCAGCACTTGCTTATTC
AAAGCGGGGACGAGGAGGAGATAGTGGCCGTACGGCTACTGCGCAAGGAG
AATCCTCATGCCGAGTACGTAAACATGGATGATCCCTCCACCTCTTCGTC
CTCTTCCTCCATCTCCTCCGGTGAGTCTTCTTCCTACTATTCTTCTTCGC
CAGACGAAAATGACCACTACACTTCAATTTTGTCCATGCTCATGACTGGG
GGAGGCTGTATCTCCTTCTCCCCCTCCTCGCCCTCCCTCTCTTCCTCCCT
GGTAAGCACCGGCGCCAGCGCCAGCACCAGCTCCAGCAGCAAGCGCCTTA
ATCAGTCACGATACATGCCGTTACAGCCCTATGAATCATGGGGAGACAAA
ACAAATCCAGATCACGCATTCTACGAGCCGTTGTGGTGCTTCCCTATCTT
CATCTACCTCATCCAGGCAGGGGATACGTTGCCCTCGCTAGCTCGGTCCT
TCGGTCTCAAAATCGATGTCTTGCGAAGGGACAACAGAGATAAATTCAAG
GTAGGCGAGCCAGCAGGTGTGTTGATATCAGGACAGAAGCTCAGGGTCAG
AAATGTAGAATATGATGGGAAGGCGACGGCGGCCTGGGTGGCACGAGGCG
GTGGATTGGGGGGACGAGGTAGGGAGGGAGGAAGGGCTGGAGGAGGGGTG
GTGA
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Coding sequence (CDS) from alignment at scaffold_11:637338..638491+

>mRNA_5816 ID=mRNA_5816|Name=jgi.p|Nanoce1779_2|38171|organism=Nannochloropsis oceanica|type=CDS|length=1212bp|location=Sequence derived from alignment at scaffold_11:637338..638491+ (Nannochloropsis oceanica)
ATGGACCATGACCACGACGACCCGCTATTTCAGCTGCACAAGCTTCAGCT
CTCGACGCCCTTGCTCGATGAGCCTATTTTGATAAAGTGCATCAAATTTC
CACTTGTCTACTTGGTGAGTTTGTCCCGGGCGTCTTTACTCAAAGCCCTG
TCTCCTCGTCAGGACATTGAGACCAAACAATTGCAGATAGCGCCTTCGCC
TGTCTACCCCGACATCCTGGAAGTACGGCACGTTCATGCTTTCGAGGCCT
TCGATGGGGAGGCATACCCGAACGAGTGTCACCACCATCCGCAGCATCGC
TCTGCAGCGTTACACTCAGGCCTGGCCCACATACAGGAACAAGACCGCCT
AACGCACGTGAATGGACAGCCCGTATTTTCGATCAAGCAGGTTCAGCACT
TGCTTATTCAAAGCGGGGACGAGGAGGAGATAGTGGCCGTACGGCTACTG
CGCAAGGAGAATCCTCATGCCGAGTACGTAAACATGGATGATCCCTCCAC
CTCTTCGTCCTCTTCCTCCATCTCCTCCGGCAGGGGATACGTTGCCCTCG
CTAGCTCGGTCCTTCGGTCTCAAAATCGATGTCTTGCGAAGGGACAACAG
AGATAAATGGACCATGACCACGACGACCCGCTATTTCAGCTGCACAAGCT
TCAGCTCTCGACGCCCTTGCTCGATGAGCCTATTTTGATAAAGTGCATCA
AATTTCCACTTGTCTACTTGGTGAGTTTGTCCCGGGCGTCTTTACTCAAA
GCCCTGTCTCCTCGTCAGGACATTGAGACCAAACAATTGCAGATAGCGCC
TTCGCCTGTCTACCCCGACATCCTGGAAGTACGGCACGTTCATGCTTTCG
AGGCCTTCGATGGGGAGGCATACCCGAACGAGTGTCACCACCATCCGCAG
CATCGCTCTGCAGCGTTACACTCAGGCCTGGCCCACATACAGGAACAAGA
CCGCCTAACGCACGTGAATGGACAGCCCGTATTTTCGATCAAGCAGGTTC
AGCACTTGCTTATTCAAAGCGGGGACGAGGAGGAGATAGTGGCCGTACGG
CTACTGCGCAAGGAGAATCCTCATGCCGAGTACGTAAACATGGATGATCC
CTCCACCTCTTCGTCCTCTTCCTCCATCTCCTCCGGCAGGGGATACGTTG
CCCTCGCTAGCTCGGTCCTTCGGTCTCAAAATCGATGTCTTGCGAAGGGA
CAACAGAGATAA
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Synonyms
Publications