jgi.p|Nanoce1779_2|590161, mRNA_5734 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590161
Unique NamemRNA_5734
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1252
Alignment locationscaffold_11:446311..447562 +

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Properties
Property NameValue
TranscriptId590247
TrackFilteredModels2
ProteinId590161
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:446311..447562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590161gene_5734Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590161mRNA_5734-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5734CDS_5734Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5734 ID=mRNA_5734|Name=jgi.p|Nanoce1779_2|590161|organism=Nannochloropsis oceanica|type=mRNA|length=1252bp
ACAGGAATCTCCTTGTTGCTTCATCACTAGTCTGTCAGTTGGGTGGCCTG
ATGCTCTCATGATCTGGCGGCAAGGACAAATACCGCCGCCGCCCTCTTGC
TTTCTTCTTTTGGCTTTGACCTGGGCTTGCTGCAGCGTGACTGCCGTCTG
CGCGGCAGCTAGTCAAGGCACCACGTTTGCCTCTCCTGCTTGTTTCATTG
CCCGAGCAAGGGCCTCTCCTGCCTCATCGCTGCTCCGAACTGTCCTTCTC
ACAGCGACGACTGTGATGGCATCCTCCACTTCCACCCTCAGCTCGCCAAC
CAGGAGCACAAGCCTCAGCAGCAGCAGTACTGGCGTGGACATCGAGACCA
GCAACGGGAAGCGTCTGCATTTTGTGTGGTCACCGGAGGTTAATTCGACG
CAGGACGCCATGAAAGCGTTGCTGGTGAGCAGCACGGGGGAGGCCTTGTC
GAGGGCTGGCGTGGACGTGCTAGCCTTGGGGGCCGGGATGCAGACCAAGG
GCAGGGGTACAAGTGGCCGTGCTTGGGTCGGGATAGTGGGCAACGCTTTT
CTGACTTTGGCCCTTCCCAGAAGCGCCGTATCCTTATTGCCGTACGCTAT
CACTTTGCTGCCTCTCCGCATAGGCACGCTGGTGGCACGCGCGATCATCC
ATGTCTTACCCACCTCGGAGGCCAGGGCCAACGTCCACCTCAAATGGCCC
AATGACGTGCTACTCAGTGACGAAAAGGTGAGCGGCTTGCTTGTAGAAAT
GGACAGCTCATCAGCCTACTACCTGGTGGGTATTGGCGTCAACGTGGTCC
AGGCGCCGCCAGTGCCTGCCGCCGGCGCCGATCGGGGGCGCACCGCCACC
TGCCTGGCCGACCATGGCTTACCAGTCTCGGACGCGGATACTGCCAAGGA
CTTGTCGATTAGCATTGCCCGGGCCGTGACGGAGTGGATAGGCCAGGCGG
CGACAGAAGACACGGCGGAGCTCGTGGTAGCTGATTGGGAGGGGTTGGCT
ACATGGGGCAAGGAGTACCGGCGGCGGGACGACGATGTGGTCGTTACTCC
ACTGGGGCTGGAAATGGATGGCCGGCTGCGCGTTCGGGACCAGGCCACAG
GCGCCATTCACTACTTGGTTGCTGAGTACTTGCATTGAATGATTGTCGGG
GGGATGGGTGGGCTGGCGGACGGGTAGAGAAGAGAGGAAACCCCCCCCCA
CCAAATCCGCAGAAAAAGGAAACGAAGACAATCGTAAAATAGAAAAACTT
CA
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protein sequence of jgi.p|Nanoce1779_2|590161

>mRNA_5734-protein ID=mRNA_5734-protein|Name=jgi.p|Nanoce1779_2|590161|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MIWRQGQIPPPPSCFLLLALTWACCSVTAVCAAASQGTTFASPACFIARA
RASPASSLLRTVLLTATTVMASSTSTLSSPTRSTSLSSSSTGVDIETSNG
KRLHFVWSPEVNSTQDAMKALLVSSTGEALSRAGVDVLALGAGMQTKGRG
TSGRAWVGIVGNAFLTLALPRSAVSLLPYAITLLPLRIGTLVARAIIHVL
PTSEARANVHLKWPNDVLLSDEKVSGLLVEMDSSSAYYLVGIGVNVVQAP
PVPAAGADRGRTATCLADHGLPVSDADTAKDLSISIARAVTEWIGQAATE
DTAELVVADWEGLATWGKEYRRRDDDVVVTPLGLEMDGRLRVRDQATGAI
HYLVAEYLH*
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mRNA from alignment at scaffold_11:446311..447562+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5734 ID=mRNA_5734|Name=jgi.p|Nanoce1779_2|590161|organism=Nannochloropsis oceanica|type=mRNA|length=1252bp|location=Sequence derived from alignment at scaffold_11:446311..447562+ (Nannochloropsis oceanica)
ACAGGAATCTCCTTGTTGCTTCATCACTAGTCTGTCAGTTGGGTGGCCTG
ATGCTCTCATGATCTGGCGGCAAGGACAAATACCGCCGCCGCCCTCTTGC
TTTCTTCTTTTGGCTTTGACCTGGGCTTGCTGCAGCGTGACTGCCGTCTG
CGCGGCAGCTAGTCAAGGCACCACGTTTGCCTCTCCTGCTTGTTTCATTG
CCCGAGCAAGGGCCTCTCCTGCCTCATCGCTGCTCCGAACTGTCCTTCTC
ACAGCGACGACTGTGATGGCATCCTCCACTTCCACCCTCAGCTCGCCAAC
CAGGAGCACAAGCCTCAGCAGCAGCAGTACTGGCGTGGACATCGAGACCA
GCAACGGGAAGCGTCTGCATTTTGTGTGGTCACCGGAGGTTAATTCGACG
CAGGACGCCATGAAAGCGTTGCTGGTGAGCAGCACGGGGGAGGCCTTGTC
GAGGGCTGGCGTGGACGTGCTAGCCTTGGGGGCCGGGATGCAGACCAAGG
GCAGGGGTACAAGTGGCCGTGCTTGGGTCGGGATAGTGGGCAACGCTTTT
CTGACTTTGGCCCTTCCCAGAAGCGCCGTATCCTTATTGCCGTACGCTAT
CACTTTGCTGCCTCTCCGCATAGGCACGCTGGTGGCACGCGCGATCATCC
ATGTCTTACCCACCTCGGAGGCCAGGGCCAACGTCCACCTCAAATGGCCC
AATGACGTGCTACTCAGTGACGAAAAGGTGAGCGGCTTGCTTGTAGAAAT
GGACAGCTCATCAGCCTACTACCTGGTGGGTATTGGCGTCAACGTGGTCC
AGGCGCCGCCAGTGCCTGCCGCCGGCGCCGATCGGGGGCGCACCGCCACC
TGCCTGGCCGACCATGGCTTACCAGTCTCGGACGCGGATACTGCCAAGGA
CTTGTCGATTAGCATTGCCCGGGCCGTGACGGAGTGGATAGGCCAGGCGG
CGACAGAAGACACGGCGGAGCTCGTGGTAGCTGATTGGGAGGGGTTGGCT
ACATGGGGCAAGGAGTACCGGCGGCGGGACGACGATGTGGTCGTTACTCC
ACTGGGGCTGGAAATGGATGGCCGGCTGCGCGTTCGGGACCAGGCCACAG
GCGCCATTCACTACTTGGTTGCTGAGTACTTGCATTGAATGATTGTCGGG
GGGATGGGTGGGCTGGCGGACGGGTAGAGAAGAGAGGAAACCCCCCCCCA
CCAAATCCGCAGAAAAAGGAAACGAAGACAATCGTAAAATAGAAAAACTT
CA
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Coding sequence (CDS) from alignment at scaffold_11:446311..447562+

>mRNA_5734 ID=mRNA_5734|Name=jgi.p|Nanoce1779_2|590161|organism=Nannochloropsis oceanica|type=CDS|length=1080bp|location=Sequence derived from alignment at scaffold_11:446311..447562+ (Nannochloropsis oceanica)
ATGATCTGGCGGCAAGGACAAATACCGCCGCCGCCCTCTTGCTTTCTTCT
TTTGGCTTTGACCTGGGCTTGCTGCAGCGTGACTGCCGTCTGCGCGGCAG
CTAGTCAAGGCACCACGTTTGCCTCTCCTGCTTGTTTCATTGCCCGAGCA
AGGGCCTCTCCTGCCTCATCGCTGCTCCGAACTGTCCTTCTCACAGCGAC
GACTGTGATGGCATCCTCCACTTCCACCCTCAGCTCGCCAACCAGGAGCA
CAAGCCTCAGCAGCAGCAGTACTGGCGTGGACATCGAGACCAGCAACGGG
AAGCGTCTGCATTTTGTGTGGTCACCGGAGGTTAATTCGACGCAGGACGC
CATGAAAGCGTTGCTGGTGAGCAGCACGGGGGAGGCCTTGTCGAGGGCTG
GCGTGGACGTGCTAGCCTTGGGGGCCGGGATGCAGACCAAGGGCAGGGGT
ACAAGTGGCCGTGCTTGGGTCGGGATAGTGGGCAACGCTTTTCTGACTTT
GGCCCTTCCCAGAAGCGCCGTATCCTTATTGCCGTACGCTATCACTTTGC
TGCCTCTCCGCATAGGCACGCTGGTGGCACGCGCGATCATCCATGTCTTA
CCCACCTCGGAGGCCAGGGCCAACGTCCACCTCAAATGGCCCAATGACGT
GCTACTCAGTGACGAAAAGGTGAGCGGCTTGCTTGTAGAAATGGACAGCT
CATCAGCCTACTACCTGGTGGGTATTGGCGTCAACGTGGTCCAGGCGCCG
CCAGTGCCTGCCGCCGGCGCCGATCGGGGGCGCACCGCCACCTGCCTGGC
CGACCATGGCTTACCAGTCTCGGACGCGGATACTGCCAAGGACTTGTCGA
TTAGCATTGCCCGGGCCGTGACGGAGTGGATAGGCCAGGCGGCGACAGAA
GACACGGCGGAGCTCGTGGTAGCTGATTGGGAGGGGTTGGCTACATGGGG
CAAGGAGTACCGGCGGCGGGACGACGATGTGGTCGTTACTCCACTGGGGC
TGGAAATGGATGGCCGGCTGCGCGTTCGGGACCAGGCCACAGGCGCCATT
CACTACTTGGTTGCTGAGTACTTGCATTGA
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Synonyms
Publications