Properties
| Property Name | Value |
|---|
| TranscriptId | 591538 |
| Track | FilteredModels2 |
| ProteinId | 591452 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:510754..512955 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5118 ID=mRNA_5118|Name=jgi.p|Nanoce1779_2|591452|organism=Nannochloropsis oceanica|type=mRNA|length=1659bp
TCTCACGTCCACGTAAGCACTGCAGCTTGGGAATGAACCGTCGCGTTGCA
CATTCATCTCGCATCCCTGCATTCATGCTGGATGGGGCCCTCTCTTTCTC
TTGCGCAGTTTCCAGCAAAGTCCTCACTATGTGCGGTGGACCTTCTGGTT
TCGCAGTCGCTTCCAATCCTCTGGACACCAAGGCAGCTCGTCATCCTTGT
GCTTCGCCGCGCAAATACGACAATCCCGCCTGCTTCCGTCAAGCCGTTCA
CAGAAACCACGGCATGCTACAGTGCCCACACAGCATGGCTCTCTCGATAC
ACAAGTGCTAATTTCTTGCGCTCATCCCCCCCTCACCGAAATCAAACACC
AAAAGTCAGCAAGCACTCGACAGAAATTTACCAAAGCTTGACGACGCTCA
ATTGCCTCTCTAAAAATGGTGGCTCGAGAGGTCCACCCGCCAACCTACAC
GGCCACGGACCCTGCATTGGAGAAGGACGGTATCATTTACGAGTATGGCA
GCGCGGCGAATCCCACTTTATCCCCCGTCCCTTATTTGGCCTTGGGTTCC
AGCCACCACGAAGAGGGCCCTACTCGCATCATCCCCTTCGATCTGGCCGA
GAAGCTCGAAGTTCCCTACCCAGCCACCTCCCCCAATCTGCTCGCTGCCT
ACATCCGCATATTGCCCGGCGAGAGCTTGGAGACTCAAGCCAGGGCAACG
TCTCAGGCTTTTTACGTCATTCGTGGGAGTGGCGTGTCGACGTCCACTGA
ACATGGCGAGATCAAATGGAACACAGGAGACTTGTTTGTGCTGCCCGCGG
CGGTCGCTCCTGTGAGCCACGCGGCGTTGGGGGTGGAGGTTGCGGAGGGA
GGGGAAGCGGCTGCTTTGTACTGGGTCAGTGACGAGCCTCTGTTGCGTTA
CTTGGGAGTGAATCCCAGTGAGAAGAAGTTCGAGCCGACGCTGTTTACCC
GGAAGAGGATGGTGGAAAGCGTGGAGCTGTTGAAACATGAGGAGGGAGTG
GAGCATCGGAACCGACTGGGTATTTTGTTGGGAAACAAGGCGACAGAGAA
GAACACTTTGACGCTGACGCATACCCTATGGAGTTTGCTTAACTTGCTCC
CGGCAGGACAAAAGCAGCGGCCGCATCGCCACAACTCCGTCGCCCTGGAT
CTGTGCGTCACCGCCGCTCCTACCAATACTTATACCCTGATGGGGCCTGA
GCTTGACGAGGATGGATGGGTCAAGGATCCCATTCGCCTTGATTGGGCGA
GTGGTGCTTGTTTCGTCACCCCGCCCGGGTGGTGGCATTCGCACCATAAC
GATTCGGAGGTTGACGCGTGGGTGCTGCCTTTGCAGGACGCGGGCTTACA
TACCCACATGCGGACGTTGAACATTGAATTCAGCGTGGCTCAGAAGGAGG
ATACTTCCCTTGCTACTGCCCTTTCGTCAGCGGATTCCTCCTCCTCCTCT
TCCACCTCGTCCTCGGCGGAATCGGACAAGACGGCTGCGGCGTTGTCCTC
TCCATGAGTTGGTGTCGAGGGAAGGAAAGGAAAGTAAAGGGAGAGAAAGG
AGACGGGGACAAAAACCAAAGCAATCAACCTCGTTTTTGGTCTCCGCGGA
ATGTATGAGAATGACTGAAAGGGGGGGAAAGGGAGGAAGGAAGAGAGGGA
AGGGAGGGT back to topprotein sequence of jgi.p|Nanoce1779_2|591452 >mRNA_5118-protein ID=mRNA_5118-protein|Name=jgi.p|Nanoce1779_2|591452|organism=Nannochloropsis oceanica|type=polypeptide|length=364bp
MVAREVHPPTYTATDPALEKDGIIYEYGSAANPTLSPVPYLALGSSHHEE
GPTRIIPFDLAEKLEVPYPATSPNLLAAYIRILPGESLETQARATSQAFY
VIRGSGVSTSTEHGEIKWNTGDLFVLPAAVAPVSHAALGVEVAEGGEAAA
LYWVSDEPLLRYLGVNPSEKKFEPTLFTRKRMVESVELLKHEEGVEHRNR
LGILLGNKATEKNTLTLTHTLWSLLNLLPAGQKQRPHRHNSVALDLCVTA
APTNTYTLMGPELDEDGWVKDPIRLDWASGACFVTPPGWWHSHHNDSEVD
AWVLPLQDAGLHTHMRTLNIEFSVAQKEDTSLATALSSADSSSSSSTSSS
AESDKTAAALSSP* back to topmRNA from alignment at scaffold_12:510754..512955- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5118 ID=mRNA_5118|Name=jgi.p|Nanoce1779_2|591452|organism=Nannochloropsis oceanica|type=mRNA|length=2202bp|location=Sequence derived from alignment at scaffold_12:510754..512955- (Nannochloropsis oceanica)
TCTCACGTCCACGTAAGCACTGCAGCTTGGGAATGAACCGTCGCGTTGCA
CATTCATCTCGCATCCCTGCATTCATGCTGGATGGGGCCCTCTCTTTCTC
TTGCGCAGTTTCCAGCAAAGTCCTCACTATGTGCGGTGGACCTTCTGGTT
TCGCAGTCGCTTCCAATCCTCTGGACACCAAGGCAGCTCGTCATCCTTGT
GCTTCGCCGCGCAAATACGACAATCCCGCCTGCTTCCGTCAAGCCGTTCA
CAGAAACCACGGCATGCTACAGTGCCCACACAGCATGGCTCTCTCGATAC
ACAAGTGCTAATTTCTTGCGCTCATCCCCCCCTCACCGAAATCAAACACC
AAAAGTCAGCAAGCACTCGACAGAAATTTACCAAAGCTTGACGACGCTCA
ATTGCCTCTCTAAAAATGGTGGCTCGAGAGGTCCACCCGCCAACCTACAC
GGCCACGGACCCTGCATTGGAGAAGGACGGTATCATTTACGAGTATGGCA
GCGCGGCGAATCCCACTTTATCCCCCGTCCCTTATTTGGCCTTGGGTTCC
AGCCACCACGAAGAGGGTAAGTCCGCTGTCGTGTCAGTATGCCAAGTGAG
GGGAAGGAGGACGATGACGGGGCGATGAAATCTTGGACAACCTTGCGGTA
CCGGCCAGTGGCCACGAGGATGGTGGACTGTGAGCAGCGCGCCATCATGC
GAAGGATCCCGCTCTTGGTGGGAAATGAGGTCCCAGCGCAGGGGGGCGCG
GCGGCGGGTTAGACTGATTGGAGGCACTATCTGAGACGAGGATGAGCATC
CTTGGTTCGTGGAGCATGTGTAGGGGCCTGCTTCTTTCATCGTTGACGCT
GTCACTATCACTACCATGAATGCGCTTTAGTTGTAGCACATGCCGCTTTT
CCTATACACCTCTCGACAAAGGACGCTCATCCTCTCCCCTTCACTCCCTC
CTCACCCACACACCAGGCCCTACTCGCATCATCCCCTTCGATCTGGCCGA
GAAGCTCGAAGTTCCCTACCCAGCCACCTCCCCCAATCTGCTCGCTGCCT
ACATCCGCATATTGCCCGGCGAGAGCTTGGAGACTCAAGCCAGGGCAACG
TCTCAGGCTTTTTACGTCATTCGTGGGAGTGGCGTGTCGACGTCCACTGA
ACATGGCGAGATCAAATGGAACACAGGAGACTTGTTTGTGCTGCCCGCGG
CGGTCGCTCCTGTGAGCCACGCGGCGTTGGGGGTGGAGGTTGCGGAGGGA
GGGGAAGCGGCTGCTTTGTACTGGGTCAGTGACGAGCCTCTGTTGCGTTA
CTTGGGAGTGAATCCCAGTGAGAAGAAGTTCGAGCCGACGCTGTTTACCC
GGAAGAGGATGGTGGAAAGCGTGGAGCTGTTGAAACATGAGGAGGGAGTG
GAGCATCGGAACCGACTGGGTATTTTGTTGGGAAACAAGGCGACAGAGAA
GAACACTTTGACGCTGACGCATACCCTATGGAGTTTGCTTAACTTGCTCC
CGGCAGGACAAAAGCAGCGGCCGCATCGGTACGTTTGATCAAGTGCCAAA
TTTTTTGTTTGTTGGTGACGCGTATCCCCTCTGGTGACGCGTATCCCCTC
TTTCTCCTTCGTCCCCTTTGGCTGCTCACGATTTTCTCCCCTCCTCCCTC
TTCTTCCCCTCTCTCCCACAGCCACAACTCCGTCGCCCTGGATCTGTGCG
TCACCGCCGCTCCTACCAATACTTATACCCTGATGGGGCCTGAGCTTGAC
GAGGATGGATGGGTCAAGGATCCCATTCGCCTTGATTGGGCGAGTGGTGC
TTGTTTCGTCACCCCGCCCGGGTGGTGGCATTCGCACCATAACGATTCGG
AGGTTGACGCGTGGGTGCTGCCTTTGCAGGACGCGGGCTTACATACCCAC
ATGCGGACGTTGAACATTGAATTCAGCGTGGCTCAGAAGGAGGATACTTC
CCTTGCTACTGCCCTTTCGTCAGCGGATTCCTCCTCCTCCTCTTCCACCT
CGTCCTCGGCGGAATCGGACAAGACGGCTGCGGCGTTGTCCTCTCCATGA
GTTGGTGTCGAGGGAAGGAAAGGAAAGTAAAGGGAGAGAAAGGAGACGGG
GACAAAAACCAAAGCAATCAACCTCGTTTTTGGTCTCCGCGGAATGTATG
AGAATGACTGAAAGGGGGGGAAAGGGAGGAAGGAAGAGAGGGAAGGGAGG
GT back to topCoding sequence (CDS) from alignment at scaffold_12:510754..512955- >mRNA_5118 ID=mRNA_5118|Name=jgi.p|Nanoce1779_2|591452|organism=Nannochloropsis oceanica|type=CDS|length=3276bp|location=Sequence derived from alignment at scaffold_12:510754..512955- (Nannochloropsis oceanica)
CCACAACTCCGTCGCCCTGGATCTGTGCGTCACCGCCGCTCCTACCAATA
CTTATACCCTGATGGGGCCTGAGCTTGACGAGGATGGATGGGTCAAGGAT
CCCATTCGCCTTGATTGGGCGAGTGGTGCTTGTTTCGTCACCCCGCCCGG
GTGGTGGCATTCGCACCATAACGATTCGGAGGTTGACGCGTGGGTGCTGC
CTTTGCAGGACGCGGGCTTACATACCCACATGCGGACGTTGAACATTGAA
TTCAGCGTGGCTCAGAAGGAGGATACTTCCCTTGCTACTGCCCTTTCGTC
AGCGGATTCCTCCTCCTCCTCTTCCACCTCGTCCTCGGCGGAATCGGACA
AGACGGCTGCGGCGTTGTCCTCTCCATGAGCCCTACTCGCATCATCCCCT
TCGATCTGGCCGAGAAGCTCGAAGTTCCCTACCCAGCCACCTCCCCCAAT
CTGCTCGCTGCCTACATCCGCATATTGCCCGGCGAGAGCTTGGAGACTCA
AGCCAGGGCAACGTCTCAGGCTTTTTACGTCATTCGTGGGAGTGGCGTGT
CGACGTCCACTGAACATGGCGAGATCAAATGGAACACAGGAGACTTGTTT
GTGCTGCCCGCGGCGGTCGCTCCTGTGAGCCACGCGGCGTTGGGGGTGGA
GGTTGCGGAGGGAGGGGAAGCGGCTGCTTTGTACTGGGTCAGTGACGAGC
CTCTGTTGCGTTACTTGGGAGTGAATCCCAGTGAGAAGAAGTTCGAGCCG
ACGCTGTTTACCCGGAAGAGGATGGTGGAAAGCGTGGAGCTGTTGAAACA
TGAGGAGGGAGTGGAGCATCGGAACCGACTGGGTATTTTGTTGGGAAACA
AGGCGACAGAGAAGAACACTTTGACGCTGACGCATACCCTATGGAGTTTG
CTTAACTTGCTCCCGGCAGGACAAAAGCAGCGGCCGCATCGATGGTGGCT
CGAGAGGTCCACCCGCCAACCTACACGGCCACGGACCCTGCATTGGAGAA
GGACGGTATCATTTACGAGTATGGCAGCGCGGCGAATCCCACTTTATCCC
CCGTCCCTTATTTGGCCTTGGGTTCCAGCCACCACGAAGAGGCCACAACT
CCGTCGCCCTGGATCTGTGCGTCACCGCCGCTCCTACCAATACTTATACC
CTGATGGGGCCTGAGCTTGACGAGGATGGATGGGTCAAGGATCCCATTCG
CCTTGATTGGGCGAGTGGTGCTTGTTTCGTCACCCCGCCCGGGTGGTGGC
ATTCGCACCATAACGATTCGGAGGTTGACGCGTGGGTGCTGCCTTTGCAG
GACGCGGGCTTACATACCCACATGCGGACGTTGAACATTGAATTCAGCGT
GGCTCAGAAGGAGGATACTTCCCTTGCTACTGCCCTTTCGTCAGCGGATT
CCTCCTCCTCCTCTTCCACCTCGTCCTCGGCGGAATCGGACAAGACGGCT
GCGGCGTTGTCCTCTCCATGAGCCCTACTCGCATCATCCCCTTCGATCTG
GCCGAGAAGCTCGAAGTTCCCTACCCAGCCACCTCCCCCAATCTGCTCGC
TGCCTACATCCGCATATTGCCCGGCGAGAGCTTGGAGACTCAAGCCAGGG
CAACGTCTCAGGCTTTTTACGTCATTCGTGGGAGTGGCGTGTCGACGTCC
ACTGAACATGGCGAGATCAAATGGAACACAGGAGACTTGTTTGTGCTGCC
CGCGGCGGTCGCTCCTGTGAGCCACGCGGCGTTGGGGGTGGAGGTTGCGG
AGGGAGGGGAAGCGGCTGCTTTGTACTGGGTCAGTGACGAGCCTCTGTTG
CGTTACTTGGGAGTGAATCCCAGTGAGAAGAAGTTCGAGCCGACGCTGTT
TACCCGGAAGAGGATGGTGGAAAGCGTGGAGCTGTTGAAACATGAGGAGG
GAGTGGAGCATCGGAACCGACTGGGTATTTTGTTGGGAAACAAGGCGACA
GAGAAGAACACTTTGACGCTGACGCATACCCTATGGAGTTTGCTTAACTT
GCTCCCGGCAGGACAAAAGCAGCGGCCGCATCGATGGTGGCTCGAGAGGT
CCACCCGCCAACCTACACGGCCACGGACCCTGCATTGGAGAAGGACGGTA
TCATTTACGAGTATGGCAGCGCGGCGAATCCCACTTTATCCCCCGTCCCT
TATTTGGCCTTGGGTTCCAGCCACCACGAAGAGGCCACAACTCCGTCGCC
CTGGATCTGTGCGTCACCGCCGCTCCTACCAATACTTATACCCTGATGGG
GCCTGAGCTTGACGAGGATGGATGGGTCAAGGATCCCATTCGCCTTGATT
GGGCGAGTGGTGCTTGTTTCGTCACCCCGCCCGGGTGGTGGCATTCGCAC
CATAACGATTCGGAGGTTGACGCGTGGGTGCTGCCTTTGCAGGACGCGGG
CTTACATACCCACATGCGGACGTTGAACATTGAATTCAGCGTGGCTCAGA
AGGAGGATACTTCCCTTGCTACTGCCCTTTCGTCAGCGGATTCCTCCTCC
TCCTCTTCCACCTCGTCCTCGGCGGAATCGGACAAGACGGCTGCGGCGTT
GTCCTCTCCATGAGCCCTACTCGCATCATCCCCTTCGATCTGGCCGAGAA
GCTCGAAGTTCCCTACCCAGCCACCTCCCCCAATCTGCTCGCTGCCTACA
TCCGCATATTGCCCGGCGAGAGCTTGGAGACTCAAGCCAGGGCAACGTCT
CAGGCTTTTTACGTCATTCGTGGGAGTGGCGTGTCGACGTCCACTGAACA
TGGCGAGATCAAATGGAACACAGGAGACTTGTTTGTGCTGCCCGCGGCGG
TCGCTCCTGTGAGCCACGCGGCGTTGGGGGTGGAGGTTGCGGAGGGAGGG
GAAGCGGCTGCTTTGTACTGGGTCAGTGACGAGCCTCTGTTGCGTTACTT
GGGAGTGAATCCCAGTGAGAAGAAGTTCGAGCCGACGCTGTTTACCCGGA
AGAGGATGGTGGAAAGCGTGGAGCTGTTGAAACATGAGGAGGGAGTGGAG
CATCGGAACCGACTGGGTATTTTGTTGGGAAACAAGGCGACAGAGAAGAA
CACTTTGACGCTGACGCATACCCTATGGAGTTTGCTTAACTTGCTCCCGG
CAGGACAAAAGCAGCGGCCGCATCGATGGTGGCTCGAGAGGTCCACCCGC
CAACCTACACGGCCACGGACCCTGCATTGGAGAAGGACGGTATCATTTAC
GAGTATGGCAGCGCGGCGAATCCCACTTTATCCCCCGTCCCTTATTTGGC
CTTGGGTTCCAGCCACCACGAAGAGG back to top
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