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Properties
| Property Name | Value |
|---|
| TranscriptId | 592255 |
| Track | FilteredModels2 |
| ProteinId | 592169 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:188305..189581 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5332 ID=mRNA_5332|Name=jgi.p|Nanoce1779_2|592169|organism=Nannochloropsis oceanica|type=mRNA|length=1114bp
AACAGGAACTTATTCCACCACACTTAACGTCCATCACCATGAGCTCGTGG
TTCTCACGCCTTTTCACCTCCCGCCGGTATAGCGGACACTATAACGAGGG
GGATGAAGGGTCTTCTTCCACCCCTCCTTCTGACCTCATCACAACCACAA
CGACAACTTCCAACGCTGCTGCTACTGTGGCAGAAGAAGGGGTGAATCTG
GAGTACATGCCCTTGCCGAAAGAGCGGATCACGACCATAAAAGGCGTCTT
CGGATTCAGCAGCTGGCAAGGTGTTCCACTAATGGAGTGGTTTTTCGTCC
TGTTTTACAGCATGCTGGGGGTGTTGATGTTTTTAAACGTGGCCAATGCA
ATCATAATGGGCTCCACGGGGCTGGCTATCTTATATTTGGTGTTGGCGCC
GATCTTCTTTTTGTTACTCACGATGGCAGCGCGAGTGTTTACGGAGGTAG
TCATTTCAGTTCTCATGGTCCCTCACGTCCTCATGAAAAATCAACAAGAA
ATTCAGCTTCAAATTAATTCCCTGCAGCAACAGCAGCAGCAGCAACAGCA
GCAGCAGCAACAACAACAGCAACAGCAGCAACAGCAGGAGGAGCAGCAGC
AACGACCGTCCTTCTCATCTTCCAGCCAGGAACAGTATCAGCATGCAGGC
TGTCCTGACTTAGAGGGAGGACGACACACTGCTGGTGCTGACTTGACCAC
AGTCCATCTCAATTCAGGAGGAGGTGGTGGAACCGGGGCAGGAGGGGGTT
TGAGGTCCCGTCGTCAAGACGATGAGGTAGGAATTGCTCTGGCGTAAAGA
TGGGCAGTGCGAAAGAGTTCGGAAAAGGACAGGTTCGTGAGTGGTCTTGG
GTTGAGCGTGAGAGGACAGTGGGAGAAAGGAGGGAGGGAAGGAATGGGTG
TGTCTTCTGTTGTAGGATGTGAGTGAGATTGTGCATAAGAAATACAGAAT
AGCGTCATGAGAAGAGGAGCTGGAGTGGAGACAAGAGGGCCGGTGTGTTT
GTCATTGAATAAGGAGGGTGGCATGGAGTACGCGCGATATGGCCCGAGAG
AGCGAAGCCAAGGACGATGAGAGTACTAACAAACAACAAAAGAAAGACGA
GAGACGATTTGCCA back to topprotein sequence of jgi.p|Nanoce1779_2|592169 >mRNA_5332-protein ID=mRNA_5332-protein|Name=jgi.p|Nanoce1779_2|592169|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MSSWFSRLFTSRRYSGHYNEGDEGSSSTPPSDLITTTTTTSNAAATVAEE
GVNLEYMPLPKERITTIKGVFGFSSWQGVPLMEWFFVLFYSMLGVLMFLN
VANAIIMGSTGLAILYLVLAPIFFLLLTMAARVFTEVVISVLMVPHVLMK
NQQEIQLQINSLQQQQQQQQQQQQQQQQQQQQQEEQQQRPSFSSSSQEQY
QHAGCPDLEGGRHTAGADLTTVHLNSGGGGGTGAGGGLRSRRQDDEVGIA
LA* back to topmRNA from alignment at scaffold_13:188305..189581- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5332 ID=mRNA_5332|Name=jgi.p|Nanoce1779_2|592169|organism=Nannochloropsis oceanica|type=mRNA|length=1277bp|location=Sequence derived from alignment at scaffold_13:188305..189581- (Nannochloropsis oceanica)
AACAGGAACTTATTCCACCACACTTAACGTCCATCACCATGAGCTCGTGG
TTCTCACGCCTTTTCACCTCCCGCCGGTATAGCGGACACTATAACGAGGG
GGATGAAGGGTCTTCTTCCACCCCTCCTTCTGACCTCATCACAACCACAA
CGACAACTTCCAACGCTGCTGCTACTGTGGCAGAAGAAGGGGTGAATCTG
GAGTACATGCCCTTGCCGAAAGAGCGGATCACGACCATAAAAGGCGTCTT
CGGATTCAGCAGCTGGCAAGGTGTTCCACTAATGGAGTGGTTTTTCGTCC
TGTTTTACAGCATGCTGGGGGTGTTGATGTTTTTAAACGTGGCCAATGCA
ATCATAATGGGCTCCACGGGGCTGGCTATCTTATATTTGGTGTTGGCGCC
GATCTTCTTTTTGTTACTCACGATGGCAGCGCGAGTGTTTACGGAGGTAG
TCATTTCAGTTCTCATGGTACGTCTGTGTCAGAGACGGGAGCGGGAGATG
GAGATTCATATTTGTGGTGTTGAATTACTCCCGTCTCGTCCGTCGTTTCT
GTCGCGTACACTGAATTCCGGGTCTTACCTTTCCCACTCCCTCCCTCTTT
CTCTCCCTCCTTCCCTCTTGTCCTTTCCAGGTCCCTCACGTCCTCATGAA
AAATCAACAAGAAATTCAGCTTCAAATTAATTCCCTGCAGCAACAGCAGC
AGCAGCAACAGCAGCAGCAGCAACAACAACAGCAACAGCAGCAACAGCAG
GAGGAGCAGCAGCAACGACCGTCCTTCTCATCTTCCAGCCAGGAACAGTA
TCAGCATGCAGGCTGTCCTGACTTAGAGGGAGGACGACACACTGCTGGTG
CTGACTTGACCACAGTCCATCTCAATTCAGGAGGAGGTGGTGGAACCGGG
GCAGGAGGGGGTTTGAGGTCCCGTCGTCAAGACGATGAGGTAGGAATTGC
TCTGGCGTAAAGATGGGCAGTGCGAAAGAGTTCGGAAAAGGACAGGTTCG
TGAGTGGTCTTGGGTTGAGCGTGAGAGGACAGTGGGAGAAAGGAGGGAGG
GAAGGAATGGGTGTGTCTTCTGTTGTAGGATGTGAGTGAGATTGTGCATA
AGAAATACAGAATAGCGTCATGAGAAGAGGAGCTGGAGTGGAGACAAGAG
GGCCGGTGTGTTTGTCATTGAATAAGGAGGGTGGCATGGAGTACGCGCGA
TATGGCCCGAGAGAGCGAAGCCAAGGACGATGAGAGTACTAACAAACAAC
AAAAGAAAGACGAGAGACGATTTGCCA back to topCoding sequence (CDS) from alignment at scaffold_13:188305..189581- >mRNA_5332 ID=mRNA_5332|Name=jgi.p|Nanoce1779_2|592169|organism=Nannochloropsis oceanica|type=CDS|length=1518bp|location=Sequence derived from alignment at scaffold_13:188305..189581- (Nannochloropsis oceanica)
GTCCCTCACGTCCTCATGAAAAATCAACAAGAAATTCAGCTTCAAATTAA
TTCCCTGCAGCAACAGCAGCAGCAGCAACAGCAGCAGCAGCAACAACAAC
AGCAACAGCAGCAACAGCAGGAGGAGCAGCAGCAACGACCGTCCTTCTCA
TCTTCCAGCCAGGAACAGTATCAGCATGCAGGCTGTCCTGACTTAGAGGG
AGGACGACACACTGCTGGTGCTGACTTGACCACAGTCCATCTCAATTCAG
GAGGAGGTGGTGGAACCGGGGCAGGAGGGGGTTTGAGGTCCCGTCGTCAA
GACGATGAGGTAGGAATTGCTCTGGCGTAAATGAGCTCGTGGTTCTCACG
CCTTTTCACCTCCCGCCGGTATAGCGGACACTATAACGAGGGGGATGAAG
GGTCTTCTTCCACCCCTCCTTCTGACCTCATCACAACCACAACGACAACT
TCCAACGCTGCTGCTACTGTGGCAGAAGAAGGGGTGAATCTGGAGTACAT
GCCCTTGCCGAAAGAGCGGATCACGACCATAAAAGGCGTCTTCGGATTCA
GCAGCTGGCAAGGTGTTCCACTAATGGAGTGGTTTTTCGTCCTGTTTTAC
AGCATGCTGGGGGTGTTGATGTTTTTAAACGTGGCCAATGCAATCATAAT
GGGCTCCACGGGGCTGGCTATCTTATATTTGGTGTTGGCGCCGATCTTCT
TTTTGTTACTCACGATGGCAGCGCGAGTGTTTACGGAGGTAGTCATTTCA
GTTCTCATGGTCCCTCACGTCCTCATGAAAAATCAACAAGAAATTCAGCT
TCAAATTAATTCCCTGCAGCAACAGCAGCAGCAGCAACAGCAGCAGCAGC
AACAACAACAGCAACAGCAGCAACAGCAGGAGGAGCAGCAGCAACGACCG
TCCTTCTCATCTTCCAGCCAGGAACAGTATCAGCATGCAGGCTGTCCTGA
CTTAGAGGGAGGACGACACACTGCTGGTGCTGACTTGACCACAGTCCATC
TCAATTCAGGAGGAGGTGGTGGAACCGGGGCAGGAGGGGGTTTGAGGTCC
CGTCGTCAAGACGATGAGGTAGGAATTGCTCTGGCGTAAATGAGCTCGTG
GTTCTCACGCCTTTTCACCTCCCGCCGGTATAGCGGACACTATAACGAGG
GGGATGAAGGGTCTTCTTCCACCCCTCCTTCTGACCTCATCACAACCACA
ACGACAACTTCCAACGCTGCTGCTACTGTGGCAGAAGAAGGGGTGAATCT
GGAGTACATGCCCTTGCCGAAAGAGCGGATCACGACCATAAAAGGCGTCT
TCGGATTCAGCAGCTGGCAAGGTGTTCCACTAATGGAGTGGTTTTTCGTC
CTGTTTTACAGCATGCTGGGGGTGTTGATGTTTTTAAACGTGGCCAATGC
AATCATAATGGGCTCCACGGGGCTGGCTATCTTATATTTGGTGTTGGCGC
CGATCTTCTTTTTGTTACTCACGATGGCAGCGCGAGTGTTTACGGAGGTA
GTCATTTCAGTTCTCATG back to top
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