jgi.p|Nanoce1779_2|593032, mRNA_5578 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593032
Unique NamemRNA_5578
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length510
Alignment locationscaffold_13:810444..811244 +

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Properties
Property NameValue
TranscriptId593118
TrackFilteredModels2
ProteinId593032
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:810444..811244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593032gene_5578Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593032mRNA_5578-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5578CDS_5578Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5578 ID=mRNA_5578|Name=jgi.p|Nanoce1779_2|593032|organism=Nannochloropsis oceanica|type=mRNA|length=510bp
ACAGATGGCCGACGCCGCTAACTTCCGGCAGCGGAACCGCCTGTCGCCCG
ACGTGACCCGCATCCTGTACGTGCGTAACCTGCCCTTTAAACTCTCTTCG
GATGAACTTTACGATATCTTTGGCAAGTACGGTCCAATCAGACAGATACG
CGTTGGTGCCGCAAACGAGAATCGCGGCAAGGCCTTTGTCATCTACGAGG
ATATTTACGATGCCAAGGACGCCCTCGAGCACTTGAATGGCTTCAACGTA
TGCGGCCGGTATTTGGTGGTCCTGTACTTTCACCCAGAGAAGGAACAGAA
GCGAGTGAACCTGGAGAAGCAACGGAAAGAGGTCGAGGAGCTACGGAAAA
TGGTCGATGCCGGCAGGGGGAAATGAGGAGCAGACGAGGGAGCAGAAGAG
GATGTGGGTGAAAATGTACATGGATGATCAAATGAAAAGGAAAAAATATC
GAACGCGCGAAGTTTTGGAGAGAATAAAGTATAGAAGGAGTGTAGAAGAG
ATATCCTCGG
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protein sequence of jgi.p|Nanoce1779_2|593032

>mRNA_5578-protein ID=mRNA_5578-protein|Name=jgi.p|Nanoce1779_2|593032|organism=Nannochloropsis oceanica|type=polypeptide|length=124bp
MADAANFRQRNRLSPDVTRILYVRNLPFKLSSDELYDIFGKYGPIRQIRV
GAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKR
VNLEKQRKEVEELRKMVDAGRGK*
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mRNA from alignment at scaffold_13:810444..811244+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5578 ID=mRNA_5578|Name=jgi.p|Nanoce1779_2|593032|organism=Nannochloropsis oceanica|type=mRNA|length=801bp|location=Sequence derived from alignment at scaffold_13:810444..811244+ (Nannochloropsis oceanica)
ACAGATGGCCGACGCCGCTAACTTCCGGCAGCGGAACCGCCTGTCGCCCG
ACGTGACCCGCATCCTGTACGTGCGTAACCTGCCCTTTAAACTCTCTTCG
GATGAACTTTACGATATCTTTGGCAAGTACGGTCCAATCAGACAGGTACG
TCTTGAGAGTTTTGGGGTGGGAGGGAGAGAACGCAGCAGGAGGGTGAGTG
TGAAGGGATGTGATGCCATACATGCGAGTTTCCTGCACTTTTGCATATCA
TTGCCGGATTTGAGTGACTCGCGCGGTCAATGGGGCATGTTGGCGTGTAT
CGCCCCTTGGTTCTGCTCTCTTCTCCGGTTTACGGCAACGAGTCACGGTT
CCCCTACCTCTTTTGCTCACGGCACTGAATACTTTCCTCCTTTTCTCGTG
TTTCCGCATCCTCCCTTTCCCTCCCCCTACGCCCAGATACGCGTTGGTGC
CGCAAACGAGAATCGCGGCAAGGCCTTTGTCATCTACGAGGATATTTACG
ATGCCAAGGACGCCCTCGAGCACTTGAATGGCTTCAACGTATGCGGCCGG
TATTTGGTGGTCCTGTACTTTCACCCAGAGAAGGAACAGAAGCGAGTGAA
CCTGGAGAAGCAACGGAAAGAGGTCGAGGAGCTACGGAAAATGGTCGATG
CCGGCAGGGGGAAATGAGGAGCAGACGAGGGAGCAGAAGAGGATGTGGGT
GAAAATGTACATGGATGATCAAATGAAAAGGAAAAAATATCGAACGCGCG
AAGTTTTGGAGAGAATAAAGTATAGAAGGAGTGTAGAAGAGATATCCTCG
G
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Coding sequence (CDS) from alignment at scaffold_13:810444..811244+

>mRNA_5578 ID=mRNA_5578|Name=jgi.p|Nanoce1779_2|593032|organism=Nannochloropsis oceanica|type=CDS|length=744bp|location=Sequence derived from alignment at scaffold_13:810444..811244+ (Nannochloropsis oceanica)
ATGGCCGACGCCGCTAACTTCCGGCAGCGGAACCGCCTGTCGCCCGACGT
GACCCGCATCCTGTACGTGCGTAACCTGCCCTTTAAACTCTCTTCGGATG
AACTTTACGATATCTTTGGCAAGTACGGTCCAATCAGACAGATACGCGTT
GGTGCCGCAAACGAGAATCGCGGCAAGGCCTTTGTCATCTACGAGGATAT
TTACGATGCCAAGGACGCCCTCGAGCACTTGAATGGCTTCAACGTATGCG
GCCGGTATTTGGTGGTCCTGTACTTTCACCCAGAGAAGGAACAGAAGCGA
GTGAACCTGGAGAAGCAACGGAAAGAGGTCGAGGAGCTACGGAAAATGGT
CGATGCCGGCAGGGGGAAATGAATGGCCGACGCCGCTAACTTCCGGCAGC
GGAACCGCCTGTCGCCCGACGTGACCCGCATCCTGTACGTGCGTAACCTG
CCCTTTAAACTCTCTTCGGATGAACTTTACGATATCTTTGGCAAGTACGG
TCCAATCAGACAGATACGCGTTGGTGCCGCAAACGAGAATCGCGGCAAGG
CCTTTGTCATCTACGAGGATATTTACGATGCCAAGGACGCCCTCGAGCAC
TTGAATGGCTTCAACGTATGCGGCCGGTATTTGGTGGTCCTGTACTTTCA
CCCAGAGAAGGAACAGAAGCGAGTGAACCTGGAGAAGCAACGGAAAGAGG
TCGAGGAGCTACGGAAAATGGTCGATGCCGGCAGGGGGAAATGA
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Synonyms
Publications