jgi.p|Nanoce1779_2|595402, mRNA_7044 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595402
Unique NamemRNA_7044
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length706
Alignment locationscaffold_16:142741..143643 +

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Properties
Property NameValue
TranscriptId595488
TrackFilteredModels2
ProteinId595402
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:142741..143643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595402gene_7044Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595402mRNA_7044-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7044CDS_7044Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7044 ID=mRNA_7044|Name=jgi.p|Nanoce1779_2|595402|organism=Nannochloropsis oceanica|type=mRNA|length=706bp
ACAGCTACAGCCCCTCGTTTTTGTTGCCGCTCCTTGCTTCAGCCCACCAT
CATCACCATGCACCAGGCTGCTGTTCGTCTCACCTTGGCCGTGGCCTTCT
TGAGCTGCTTAGTCCGCAATGTGCATGCATTTTTGCTGCCCACACTTCCT
GTTCAGAGGCACTCCACGGCTCTCTTCATGAAGGCCTCCTCCTCCCCCCT
GTCGACCCGCCGCTCCTCCCTTGCCTCCCGTACGGACCTTCTAAACAAGG
CCAGCTTTGGCCTCGCTGCCGCCGCTACCGCCTTTTTCATAACCCCTTCC
TTACTCCCTTCCTCGTCCTCGTCCTGGTCTGCCAATGCTGCGCCAACGGG
GGAGATAGAGGATTTGGCCCCTCCCACCGCCGCCGAGATCGAAGCGGAGC
GCGTCAAGAGCAAGTTGAAGAGACAGGCGGAGACGGTAATCCAAGAGAAT
GCCGCGAGAGGTGGAGGAGGCGGAGAGAAGAAAGATTATGGAGAGAGTTT
GAAAAGGGAGAGGGAGAAGCAAAAGCTGCTAAAAAAGGACGCGGCGCAAC
GACGGCAAGATTTGTGTGAGAACTTAGGGAGGGGATGTTAGAAAGGAGAA
GAGGGCCCACCGTCCATCCCTTCCCCTATTTTTACGTCCAGGAGGGGTTA
AAAGGGGTAAGAGCATTCACCTTCCATCCCTCCCTTTCTTTGTATGTGGG
AAAGTC
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protein sequence of jgi.p|Nanoce1779_2|595402

>mRNA_7044-protein ID=mRNA_7044-protein|Name=jgi.p|Nanoce1779_2|595402|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MHQAAVRLTLAVAFLSCLVRNVHAFLLPTLPVQRHSTALFMKASSSPLST
RRSSLASRTDLLNKASFGLAAAATAFFITPSLLPSSSSSWSANAAPTGEI
EDLAPPTAAEIEAERVKSKLKRQAETVIQENAARGGGGGEKKDYGESLKR
EREKQKLLKKDAAQRRQDLCENLGRGC*
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mRNA from alignment at scaffold_16:142741..143643+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7044 ID=mRNA_7044|Name=jgi.p|Nanoce1779_2|595402|organism=Nannochloropsis oceanica|type=mRNA|length=903bp|location=Sequence derived from alignment at scaffold_16:142741..143643+ (Nannochloropsis oceanica)
ACAGCTACAGCCCCTCGTTTTTGTTGCCGCTCCTTGCTTCAGCCCACCAT
CATCACCATGCACCAGGCTGCTGTTCGTCTCACCTTGGCCGTGGCCTTCT
TGAGCTGCTTAGTCCGCAATGTGCATGCATTTTTGCTGCCCACACTTCCT
GTTCAGAGGTATGCATTGGCTTTTTGTCGACGGTGTGAGTATTCTGATCC
CTTCATCCCCCCTCTCCCCCTTTGAAGATCAACCAACATTCATCCGTACG
CACTTGCCTTGTGAATGAATGTCGCAGCACCACATCTACGACCCGCACCA
TCATTATCCCTCTAACCCCTTTCTCTTCTTCTCTTACCTTTCCAACTTTT
TCCAGGCACTCCACGGCTCTCTTCATGAAGGCCTCCTCCTCCCCCCTGTC
GACCCGCCGCTCCTCCCTTGCCTCCCGTACGGACCTTCTAAACAAGGCCA
GCTTTGGCCTCGCTGCCGCCGCTACCGCCTTTTTCATAACCCCTTCCTTA
CTCCCTTCCTCGTCCTCGTCCTGGTCTGCCAATGCTGCGCCAACGGGGGA
GATAGAGGATTTGGCCCCTCCCACCGCCGCCGAGATCGAAGCGGAGCGCG
TCAAGAGCAAGTTGAAGAGACAGGCGGAGACGGTAATCCAAGAGAATGCC
GCGAGAGGTGGAGGAGGCGGAGAGAAGAAAGATTATGGAGAGAGTTTGAA
AAGGGAGAGGGAGAAGCAAAAGCTGCTAAAAAAGGACGCGGCGCAACGAC
GGCAAGATTTGTGTGAGAACTTAGGGAGGGGATGTTAGAAAGGAGAAGAG
GGCCCACCGTCCATCCCTTCCCCTATTTTTACGTCCAGGAGGGGTTAAAA
GGGGTAAGAGCATTCACCTTCCATCCCTCCCTTTCTTTGTATGTGGGAAA
GTC
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Coding sequence (CDS) from alignment at scaffold_16:142741..143643+

>mRNA_7044 ID=mRNA_7044|Name=jgi.p|Nanoce1779_2|595402|organism=Nannochloropsis oceanica|type=CDS|length=1068bp|location=Sequence derived from alignment at scaffold_16:142741..143643+ (Nannochloropsis oceanica)
ATGCACCAGGCTGCTGTTCGTCTCACCTTGGCCGTGGCCTTCTTGAGCTG
CTTAGTCCGCAATGTGCATGCATTTTTGCTGCCCACACTTCCTGTTCAGA
GGCACTCCACGGCTCTCTTCATGAAGGCCTCCTCCTCCCCCCTGTCGACC
CGCCGCTCCTCCCTTGCCTCCCGTACGGACCTTCTAAACAAGGCCAGCTT
TGGCCTCGCTGCCGCCGCTACCGCCTTTTTCATAACCCCTTCCTTACTCC
CTTCCTCGTCCTCGTCCTGGTCTGCCAATGCTGCGCCAACGGGGGAGATA
GAGGATTTGGCCCCTCCCACCGCCGCCGAGATCGAAGCGGAGCGCGTCAA
GAGCAAGTTGAAGAGACAGGCGGAGACGGTAATCCAAGAGAATGCCGCGA
GAGGTGGAGGAGGCGGAGAGAAGAAAGATTATGGAGAGAGTTTGAAAAGG
GAGAGGGAGAAGCAAAAGCTGCTAAAAAAGGACGCGGCGCAACGACGGCA
AGATTTGTGTGAGAACTTAGGGAGGGGATGTTAGATGCACCAGGCTGCTG
TTCGTCTCACCTTGGCCGTGGCCTTCTTGAGCTGCTTAGTCCGCAATGTG
CATGCATTTTTGCTGCCCACACTTCCTGTTCAGAGGCACTCCACGGCTCT
CTTCATGAAGGCCTCCTCCTCCCCCCTGTCGACCCGCCGCTCCTCCCTTG
CCTCCCGTACGGACCTTCTAAACAAGGCCAGCTTTGGCCTCGCTGCCGCC
GCTACCGCCTTTTTCATAACCCCTTCCTTACTCCCTTCCTCGTCCTCGTC
CTGGTCTGCCAATGCTGCGCCAACGGGGGAGATAGAGGATTTGGCCCCTC
CCACCGCCGCCGAGATCGAAGCGGAGCGCGTCAAGAGCAAGTTGAAGAGA
CAGGCGGAGACGGTAATCCAAGAGAATGCCGCGAGAGGTGGAGGAGGCGG
AGAGAAGAAAGATTATGGAGAGAGTTTGAAAAGGGAGAGGGAGAAGCAAA
AGCTGCTAAAAAAGGACGCGGCGCAACGACGGCAAGATTTGTGTGAGAAC
TTAGGGAGGGGATGTTAG
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Synonyms
Publications