jgi.p|Nanoce1779_2|595816, mRNA_7156 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|595816
Unique Name	mRNA_7156
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1922
Alignment location	scaffold_16:415628..417698 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	595902
Track	FilteredModels2
ProteinId	595816

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:415628..417698 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595816	gene_7156	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595816	mRNA_7156-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7156	CDS_7156	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:415628..417698+
coding sequence from alignment at scaffold_16:415628..417698+

mRNA sequence

>mRNA_7156 ID=mRNA_7156|Name=jgi.p|Nanoce1779_2|595816|organism=Nannochloropsis oceanica|type=mRNA|length=1922bp
ACAGTCCATGACCACCATATTATTCTGATCGGCCGGCTGTTTTTTCTTCC
GCTCCTTCACGCACATATGCCCCGGCCAACCTCTCTCCTCCTTGCCCTTC
TCCTCGTGCAACCATGCGACGGCTTTCTACCCCCGGCCTGGCGACTATAC
GGTGACACCAAGCCGGATCTGGGTGAGGCAACTGCGAAAGCCTTTATAAA
GATAGAGCCGGCACATCGCTTTGCCAGCTTGCTGAGTCTGAGTCGACGCA
TGCGGCAAGGACAAGCAGCAGAACTGGAAGCAAAGAAAGACGCGTCACAG
CCCCCCTTATTACCCTCATCGCAGCCTCTTGCCAGCAACAAGAAGAACCA
TATTCACTATCAAGATCATCGCAGCCAGCAAGAGAACTCTGCCCGTATCT
CCTTGGACCTTTTTAGTCGTGTTTTGCAAACGGCGGGCGAAGTAGAGTTT
GGTCAGGATGACGCACTCTTTCATGATGCCCTTGACTTTCAATGGTCGAT
ACTTGAGAAGAATCCGACCGGGTCTGCTGCTTACTTGGCCTGCAGCCCTT
ACACCAAAGGGCGGGCATTGGTGAAGCTTGTGAGGGAGGAGCTGCCGGAG
GGACGATTTTACACGGTGCACAGTGATAGGTCGAACGACGCCATGTGCTT
TGTGGTGCATGCCCCCTACGATTACTCGCTCACCCTTCTTCAGCAACCAG
CCTCCTTCATCTCTTACGTAGAGCCCCTGCCTGCCAACCTCAAAATCAGC
CCTGGATTCCTAGCGTCCTATACTCCCTTCCATCCGCAACCCGTCAAGCC
CTCCACTGGCGCACGAAAGCAAGCACAACGAAGACATCCCGAGCAGCAGC
AGCAAGAGCACCAGCAGCAACAACGCTCTTCCTCCTCTTCCACGGGCCCC
AAAAGCCTCACTCAATCAGGGCCCGAGCTGATCCTCACCTTTGCGCCAAC
GGCCAAGATGGGCAGGCATCTCCGCTTCCTCATGTCACGATGGCGCAAGG
TCCTCCCAAAACTGAAGCGTCTGCCGGCTGTCGGTTTCCACGAGCACTTT
TTTGGTGCAGCTGCTGCATTGCACCATCAGCAAAATGTGGATGAAGGAGG
GAAGATGCAGAAGCAGGAACAGCAGCAGCAACAACAACAACACCAACAAG
AGAGCCAGGATCAGGAATCACTCTCATCTACTTCTGACTTTGCTTCATCT
TCTCCTCTGCAGCAGGGGCAGCAGCGCCCTCAGCAGTCATACGCTTCGAC
CCAGTACGCCGATCGTTTGCATGCATGGGACGCCACCCTCTCCCGTCTCC
AGCGTTTACAAGAGGAAAACCAGCCCTGCAGTTTTGAAAATGTCGTTTTC
AAGGACGAAACTAGCACTCATTTAGTTTTAGCTGGTCTGCTCGATGGCAT
GCCCCTCGCAGAAAACGAGGACCAGGAAGGGTGGGAGGACCGGCAGGCCT
GCTTGGTGGGCCTTGTCGCGTTCATTGCCTCTCATCCAGACATTTTGTCG
ATCCAAGCGCGGGTAAGTTATAGTTTGCAGAATGACCAGGCGTCGTGGAT
CATTCAAAGCGGGGATGCTGCGACGCATGCACGGCCACTATGGGATCTAG
GCCTGACGGGCGAGGGGGAGCTGATTGGTGTGGCGGACACAGGGCTCGAC
GACGAGAGTTGCTTTTTTTTTGACTCGGCATGGGGGAGGATAGAGAGAAG
TGGTTGGGAGGCACCGCTCACGGATATGAGGCAGAGGAAGGTGGTGCAGT
ATGTGAGTTTTGTGGACGGGGGTGATTTTGTGGAGGGGCATGGGACGCAT
GTGAGTGGGTCGATTGCCGGGATTATGGAGGAGGGACCAGAGAGTGTAGA
GAAGAAATGGGAGGTAGTGGGGGGTGTGAAGGAAGTGGACAAGGGGGGGA
GCGAGCGAAGAAAAGAATCTAT

protein sequence of jgi.p|Nanoce1779_2|595816

>mRNA_7156-protein ID=mRNA_7156-protein|Name=jgi.p|Nanoce1779_2|595816|organism=Nannochloropsis oceanica|type=polypeptide|length=535bp
MPRPTSLLLALLLVQPCDGFLPPAWRLYGDTKPDLGEATAKAFIKIEPAH
RFASLLSLSRRMRQGQAAELEAKKDASQPPLLPSSQPLASNKKNHIHYQD
HRSQQENSARISLDLFSRVLQTAGEVEFGQDDALFHDALDFQWSILEKNP
TGSAAYLACSPYTKGRALVKLVREELPEGRFYTVHSDRSNDAMCFVVHAP
YDYSLTLLQQPASFISYVEPLPANLKISPGFLASYTPFHPQPVKPSTGAR
KQAQRRHPEQQQQEHQQQQRSSSSSTGPKSLTQSGPELILTFAPTAKMGR
HLRFLMSRWRKVLPKLKRLPAVGFHEHFFGAAAALHHQQNVDEGGKMQKQ
EQQQQQQQHQQESQDQESLSSTSDFASSSPLQQGQQRPQQSYASTQYADR
LHAWDATLSRLQRLQEENQPCSFENVVFKDETSTHLVLAGLLDGMPLAEN
EDQEGWEDRQACLVGLVAFIASHPDILSIQARVSYSLQNDQASWIIQSGD
AATHARPLWDLGLTGEGELIGVADTGLDDESCFFF

mRNA from alignment at scaffold_16:415628..417698+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7156 ID=mRNA_7156|Name=jgi.p|Nanoce1779_2|595816|organism=Nannochloropsis oceanica|type=mRNA|length=2071bp|location=Sequence derived from alignment at scaffold_16:415628..417698+ (Nannochloropsis oceanica)
ACAGTCCATGACCACCATATTATTCTGATCGGCCGGCTGTTTTTTCTTCC
GCTCCTTCACGCACATATGCCCCGGCCAACCTCTCTCCTCCTTGCCCTTC
TCCTCGTGCAACCATGCGACGGCTTTCTACCCCCGGCCTGGCGACTATAC
GGTGACACCAAGCCGGATCTGGGTGAGGCAACTGCGAAAGCCTTTATAAA
GATAGAGCCGGCACATCGCTTTGCCAGCTTGCTGAGTCTGAGTCGACGCA
TGCGGCAAGGACAAGCAGCAGAACTGGAAGCAAAGAAAGACGCGTCACAG
CCCCCCTTATTACCCTCATCGCAGCCTCTTGCCAGCAACAAGAAGAACCA
TATTCACTATCAAGATCATCGCAGCCAGCAAGAGAACTCTGCCCGTATCT
CCTTGGACCTTTTTAGTCGTGTTTTGCAAACGGCGGGCGAAGTAGAGTTT
GGTCAGGATGACGCACTCTTTCATGATGCCCTTGACTTTCAATGGTCGAT
ACTTGAGAAGAATCCGACCGGGTCTGCTGCTTACTTGGCCTGCAGCCCTT
ACACCAAAGGGCGGGCATTGGTGAAGCTTGTGAGGGAGGAGCTGCCGGAG
GGACGATTTTACACGGTGCACAGTGATAGGTCGAACGACGCCATGTGCTT
TGTGGTGCATGCCCCCTACGGTAAGTGCCTTAAATTGAAAGGGAGAGAAG
TAGGTGCGTGCTCGCCTTATCTCAGTAGCTTTCTTCGCCAAAATAGAAGT
AACACAATGCCAGTAATTTGTTATGCCCTTCTTATCTTCGTACCCTCCAA
ATTCATCTCCCAAAAACAGATTACTCGCTCACCCTTCTTCAGCAACCAGC
CTCCTTCATCTCTTACGTAGAGCCCCTGCCTGCCAACCTCAAAATCAGCC
CTGGATTCCTAGCGTCCTATACTCCCTTCCATCCGCAACCCGTCAAGCCC
TCCACTGGCGCACGAAAGCAAGCACAACGAAGACATCCCGAGCAGCAGCA
GCAAGAGCACCAGCAGCAACAACGCTCTTCCTCCTCTTCCACGGGCCCCA
AAAGCCTCACTCAATCAGGGCCCGAGCTGATCCTCACCTTTGCGCCAACG
GCCAAGATGGGCAGGCATCTCCGCTTCCTCATGTCACGATGGCGCAAGGT
CCTCCCAAAACTGAAGCGTCTGCCGGCTGTCGGTTTCCACGAGCACTTTT
TTGGTGCAGCTGCTGCATTGCACCATCAGCAAAATGTGGATGAAGGAGGG
AAGATGCAGAAGCAGGAACAGCAGCAGCAACAACAACAACACCAACAAGA
GAGCCAGGATCAGGAATCACTCTCATCTACTTCTGACTTTGCTTCATCTT
CTCCTCTGCAGCAGGGGCAGCAGCGCCCTCAGCAGTCATACGCTTCGACC
CAGTACGCCGATCGTTTGCATGCATGGGACGCCACCCTCTCCCGTCTCCA
GCGTTTACAAGAGGAAAACCAGCCCTGCAGTTTTGAAAATGTCGTTTTCA
AGGACGAAACTAGCACTCATTTAGTTTTAGCTGGTCTGCTCGATGGCATG
CCCCTCGCAGAAAACGAGGACCAGGAAGGGTGGGAGGACCGGCAGGCCTG
CTTGGTGGGCCTTGTCGCGTTCATTGCCTCTCATCCAGACATTTTGTCGA
TCCAAGCGCGGGTAAGTTATAGTTTGCAGAATGACCAGGCGTCGTGGATC
ATTCAAAGCGGGGATGCTGCGACGCATGCACGGCCACTATGGGATCTAGG
CCTGACGGGCGAGGGGGAGCTGATTGGTGTGGCGGACACAGGGCTCGACG
ACGAGAGTTGCTTTTTTTTTGACTCGGCATGGGGGAGGATAGAGAGAAGT
GGTTGGGAGGCACCGCTCACGGATATGAGGCAGAGGAAGGTGGTGCAGTA
TGTGAGTTTTGTGGACGGGGGTGATTTTGTGGAGGGGCATGGGACGCATG
TGAGTGGGTCGATTGCCGGGATTATGGAGGAGGGACCAGAGAGTGTAGAG
AAGAAATGGGAGGTAGTGGGGGGTGTGAAGGAAGTGGACAAGGGGGGGAG
CGAGCGAAGAAAAGAATCTAT

Coding sequence (CDS) from alignment at scaffold_16:415628..417698+

>mRNA_7156 ID=mRNA_7156|Name=jgi.p|Nanoce1779_2|595816|organism=Nannochloropsis oceanica|type=CDS|length=3214bp|location=Sequence derived from alignment at scaffold_16:415628..417698+ (Nannochloropsis oceanica)
ATGCCCCGGCCAACCTCTCTCCTCCTTGCCCTTCTCCTCGTGCAACCATG
CGACGGCTTTCTACCCCCGGCCTGGCGACTATACGGTGACACCAAGCCGG
ATCTGGGTGAGGCAACTGCGAAAGCCTTTATAAAGATAGAGCCGGCACAT
CGCTTTGCCAGCTTGCTGAGTCTGAGTCGACGCATGCGGCAAGGACAAGC
AGCAGAACTGGAAGCAAAGAAAGACGCGTCACAGCCCCCCTTATTACCCT
CATCGCAGCCTCTTGCCAGCAACAAGAAGAACCATATTCACTATCAAGAT
CATCGCAGCCAGCAAGAGAACTCTGCCCGTATCTCCTTGGACCTTTTTAG
TCGTGTTTTGCAAACGGCGGGCGAAGTAGAGTTTGGTCAGGATGACGCAC
TCTTTCATGATGCCCTTGACTTTCAATGGTCGATACTTGAGAAGAATCCG
ACCGGGTCTGCTGCTTACTTGGCCTGCAGCCCTTACACCAAAGGGCGGGC
ATTGGTGAAGCTTGTGAGGGAGGAGCTGCCGGAGGGACGATTTTACACGG
TGCACAGTGATAGGTCGAACGACGCCATGTGCTTTGTGGTGCATGCCCCC
TACGATTACTCGCTCACCCTTCTTCAGCAACCAGCCTCCTTCATCTCTTA
CGTAGAGCCCCTGCCTGCCAACCTCAAAATCAGCCCTGGATTCCTAGCGT
CCTATACTCCCTTCCATCCGCAACCCGTCAAGCCCTCCACTGGCGCACGA
AAGCAAGCACAACGAAGACATCCCGAGCAGCAGCAGCAAGAGCACCAGCA
GCAACAACGCTCTTCCTCCTCTTCCACGGGCCCCAAAAGCCTCACTCAAT
CAGGGCCCGAGCTGATCCTCACCTTTGCGCCAACGGCCAAGATGGGCAGG
CATCTCCGCTTCCTCATGTCACGATGGCGCAAGGTCCTCCCAAAACTGAA
GCGTCTGCCGGCTGTCGGTTTCCACGAGCACTTTTTTGGTGCAGCTGCTG
CATTGCACCATCAGCAAAATGTGGATGAAGGAGGGAAGATGCAGAAGCAG
GAACAGCAGCAGCAACAACAACAACACCAACAAGAGAGCCAGGATCAGGA
ATCACTCTCATCTACTTCTGACTTTGCTTCATCTTCTCCTCTGCAGCAGG
GGCAGCAGCGCCCTCAGCAGTCATACGCTTCGACCCAGTACGCCGATCGT
TTGCATGCATGGGACGCCACCCTCTCCCGTCTCCAGCGTTTACAAGAGGA
AAACCAGCCCTGCAGTTTTGAAAATGTCGTTTTCAAGGACGAAACTAGCA
CTCATTTAGTTTTAGCTGGTCTGCTCGATGGCATGCCCCTCGCAGAAAAC
GAGGACCAGGAAGGGTGGGAGGACCGGCAGGCCTGCTTGGTGGGCCTTGT
CGCGTTCATTGCCTCTCATCCAGACATTTTGTCGATCCAAGCGCGGGTAA
GTTATAGTTTGCAGAATGACCAGGCGTCGTGGATCATTCAAAGCGGGGAT
GCTGCGACGCATGCACGGCCACTATGGGATCTAGGCCTGACGGGCGAGGG
GGAGCTGATTGGTGTGGCGGACACAGGGCTCGACGACGAGAGTTGCTTTT
TTTTTGAATGCCCCGGCCAACCTCTCTCCTCCTTGCCCTTCTCCTCGTGC
AACCATGCGACGGCTTTCTACCCCCGGCCTGGCGACTATACGGTGACACC
AAGCCGGATCTGGGTGAGGCAACTGCGAAAGCCTTTATAAAGATAGAGCC
GGCACATCGCTTTGCCAGCTTGCTGAGTCTGAGTCGACGCATGCGGCAAG
GACAAGCAGCAGAACTGGAAGCAAAGAAAGACGCGTCACAGCCCCCCTTA
TTACCCTCATCGCAGCCTCTTGCCAGCAACAAGAAGAACCATATTCACTA
TCAAGATCATCGCAGCCAGCAAGAGAACTCTGCCCGTATCTCCTTGGACC
TTTTTAGTCGTGTTTTGCAAACGGCGGGCGAAGTAGAGTTTGGTCAGGAT
GACGCACTCTTTCATGATGCCCTTGACTTTCAATGGTCGATACTTGAGAA
GAATCCGACCGGGTCTGCTGCTTACTTGGCCTGCAGCCCTTACACCAAAG
GGCGGGCATTGGTGAAGCTTGTGAGGGAGGAGCTGCCGGAGGGACGATTT
TACACGGTGCACAGTGATAGGTCGAACGACGCCATGTGCTTTGTGGTGCA
TGCCCCCTACGATTACTCGCTCACCCTTCTTCAGCAACCAGCCTCCTTCA
TCTCTTACGTAGAGCCCCTGCCTGCCAACCTCAAAATCAGCCCTGGATTC
CTAGCGTCCTATACTCCCTTCCATCCGCAACCCGTCAAGCCCTCCACTGG
CGCACGAAAGCAAGCACAACGAAGACATCCCGAGCAGCAGCAGCAAGAGC
ACCAGCAGCAACAACGCTCTTCCTCCTCTTCCACGGGCCCCAAAAGCCTC
ACTCAATCAGGGCCCGAGCTGATCCTCACCTTTGCGCCAACGGCCAAGAT
GGGCAGGCATCTCCGCTTCCTCATGTCACGATGGCGCAAGGTCCTCCCAA
AACTGAAGCGTCTGCCGGCTGTCGGTTTCCACGAGCACTTTTTTGGTGCA
GCTGCTGCATTGCACCATCAGCAAAATGTGGATGAAGGAGGGAAGATGCA
GAAGCAGGAACAGCAGCAGCAACAACAACAACACCAACAAGAGAGCCAGG
ATCAGGAATCACTCTCATCTACTTCTGACTTTGCTTCATCTTCTCCTCTG
CAGCAGGGGCAGCAGCGCCCTCAGCAGTCATACGCTTCGACCCAGTACGC
CGATCGTTTGCATGCATGGGACGCCACCCTCTCCCGTCTCCAGCGTTTAC
AAGAGGAAAACCAGCCCTGCAGTTTTGAAAATGTCGTTTTCAAGGACGAA
ACTAGCACTCATTTAGTTTTAGCTGGTCTGCTCGATGGCATGCCCCTCGC
AGAAAACGAGGACCAGGAAGGGTGGGAGGACCGGCAGGCCTGCTTGGTGG
GCCTTGTCGCGTTCATTGCCTCTCATCCAGACATTTTGTCGATCCAAGCG
CGGGTAAGTTATAGTTTGCAGAATGACCAGGCGTCGTGGATCATTCAAAG
CGGGGATGCTGCGACGCATGCACGGCCACTATGGGATCTAGGCCTGACGG
GCGAGGGGGAGCTGATTGGTGTGGCGGACACAGGGCTCGACGACGAGAGT
TGCTTTTTTTTTGA

Synonyms

Publications