jgi.p|Nanoce1779_2|672128, mRNA_7130 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|672128
Unique Name	mRNA_7130
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2964
Alignment location	scaffold_16:366259..369222 -

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Properties


Property Name	Value
TranscriptId	672214
Track	FilteredModels2
ProteinId	672128

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:366259..369222 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672128	gene_7130	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672128	mRNA_7130-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7130	CDS_7130	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:366259..369222-
coding sequence from alignment at scaffold_16:366259..369222-

mRNA sequence

>mRNA_7130 ID=mRNA_7130|Name=jgi.p|Nanoce1779_2|672128|organism=Nannochloropsis oceanica|type=mRNA|length=2964bp
GGGCCGTTTAGGCTCGGACAAGCAGAATTGGTGTGTCGTGGAATATGGTC
CCCAGAAAAAACGGAGGGCGAGTGATGCGGTAACAGACCAAAGTGTAATG
GTGCTTATTTTATCTCACCCAAAGCTATTGGCCGTCATGGAATACGACAA
CGACGTAGACAGGAGTGTCTCAACTTGGTGACTCACGGATACGTTGCAAT
AAAATTTGTCGTGCATCGAGAAGACTCTGATGGCCTGCAGGTTGCAGCCC
AAAAAGTTGTTCCCAGAGTCCGCGAGCGATCTTTTTTCAAGAGGGGGCTG
CCATGTGTCTCTCCTAGGCCCTCCTAAGAAGCCCTTCTTTATTTTGCGAC
GCACTTGCCGTCACACCAATTTACACGGATACGCCCTTATTTGACCCGTG
GAGGCCGGGCCGAGCGTCTACTGCTTGCACCCAGCCACCTCTTTTGGCCC
ATATAGTTGTTCTCTCACCAACCATCCCGCTTAGTAGAGAAAATTCAAAA
GAACCAGGCTATCTAGCGAGAGCTGAAAGGATCGCAAGGATCGCAGTCAT
TAAGCCTCGGCCCTTCTGGAGAAGTGGCATTTCTTTTTATTCGTGGCCAA
CGCCTACGAACCAATCACTGAGTCACCGAGTACTCAAGTCACTCACGCCA
CCCTTTTCTCGCCTCTCCCTACAACCCGTACTCGCACATGCAGTGAGTAC
ACAAGCAACCGGATCACACAAATGCGATTTTCCTCATTGTGCATTGCACT
CCTGCTCGTTCTGGCCCCGGCTGTATTTGGGCTGCAGGAGGACGATGCAA
TCAACAAGGGCTCGCGCTCTCGCCTTGTCTCCAAGCTGAAGCGTGAAGTG
GTGACGGCGAAGAGCGGGAATGCTGCCCCGTTTCGTCACCATTCGCTTCA
ACTGAAGAGGGGAGAAAAGGCTAGCAACGAGGAGAAGCTGTTGATGCCTG
TGGAGAGAGGGCAGGGTGACGAGAAATCGGATGAGAAAGAGGTACGCGCC
TTGTTAGCGAGCAAGAAAGACAAGGCGGACAAAGCGTTTGAAGAAGCAGA
AATGGGTTGGACAGATGAGGAAGAAGAAGAGGAAACGAACGAATTTGAGG
AAGATCGACTCGCGAAGGACGAGGACGAGGACGACTGGGAGGATGAGGAC
GAGGACGAGGACGAGGACGACTGGGAGGATGAGGACAAGGACGAGGACGA
GGACGACTGGGAGGATGAGGATGAGGACGAGGACGAGGACGACTGGGAGG
TTGATAATGATGACGGTGATGTGGCGCCGGCTATTTTGGAAGGTGAGTCC
GCGGACGGAATCATAATCGTGGAGGCCGACGACATGGAGAGCTTGGCCAA
GGCGTTGAAGGAGGCTGGGGCCACCGACGAGGACATTGAGGAAATAATGG
AGGAAGAGGCGGCATTTGAAGAGCTGGAGGAGGAGTTGGAGGCCGAGTTC
GGTGGGGTCGATGAAGCCAAGGCTGAGGCGGCAGGATGGGAGGCAGGGAC
AGTTATTGCCGAGAAGGCCATGAAGCAGAAGGGTGCGGGTAGCGAGGCTG
ACGAGGACGTGTCGGACGAAAAAGACGAGGACGAGGACATGTTGGACGAG
GAAGAGGACATATTGGACCAAGAGGACGAAGATATGTTGGACGAGGACGA
GGACATGTTGGACGAGGACGAGGACATGTTGGACGAGGAGGACGGGAAGT
TGTTAGATGAGGACGAGGACGAGGAAGCTGTCGCCGCGAGTAGCAAGGGA
GCAGTTACTGCAGAAGAGTCAATTTCGCTGGAAGCTGCGTCGGCCAGCGT
GGGAGGAGGGCATGAGGAAAAGAGTTCCTCATCCTCGTCTCGCGCCGGAT
TCATCTGGGCTCTTTCAGGGATTTGTGGCCTCATGGTGCTTGTGGCGGCC
GTGTGGAAGACGGCGGCTCGTCATTCGTCGTCCGACTTGTACAGTATGCC
CAACACAACAGCCTTTGGTAGTGACGCTTCGTCGCAGGAGCAACCGTTTG
GCCTAGACGCCGAGGCCTCTCTGACGCAGCACTACGGCCAGTATCGCCGT
GTCACTGCGCATGGCCAAGAGTCTCGTTAAGATCCGTGGAAGCAAAAAAC
AGGATTATGCTTACCGGAAAGGGTGATGGACGAGGATAATCCAACGTATT
AGCATTGGATGTTGACTGCTCGATGTATAAATGATAATCACAAGAGGTCT
GGTTTGAATGAGACTCTGAAAGAAGAGGTCGAGAGAAGTAGGACGAGCAG
GGAGAAATTACTTTATTGACCGAAACCCAAAAAGATAGGAGAGAAATGCA
GATGGGGAAAAGTACTTAAGACTTTATCAAATAAAGTGGATTCTGAGGGG
AAATCGGGTAGTGTTATACTGCGGCCTTCCATTTTTCTTTCATTGGAATA
GCAAAAGCCCGGGGACCTATTTCAGGCATGTATTTCTGGGAAAACAAGTC
GAAGTGCTGTGCTATGAACTACTTCTTATCTTGCTGAGATGAGAAAGCCA
AGCTGCGAGTATCTAATCGCTTCCCTCAGGCTAGGTATTCCCAATCCTCA
CCTCGATATAGGAGGCGGGCAAGTACGACGGCACAGACAATAACTAAGAC
ATATTTTTTCTTTTCCCCTCTCCTCCCAGCTCTGTGTGGGCCATCAGAGG
ACTTTGCTGGGGAAAATCTGTCAAAGTCATAAAAGCTCGGCAAAATAAGG
TAAGAACATGCAACAATTTACAATTGTCGGAAGACTTTCCCTCGTGTTGA
AATCCTGAGAGGAGGCACGCTTGTATAAAAACACCTATGTTTGCATTTGT
CTTCGGATGGGTTGCACGAGATAATTTAATTATTGTAAGACGAGACGAAG
ACATAAGATGCCCATCTATCTAAGCATTTCGTGGATTCTTCCCCGAAGAA
GCCAGAAAGATGTGCGTTCATGCGCGTGCGGCTGCGATGTGAACGCTACA
TGCAAATGCATTTG

protein sequence of jgi.p|Nanoce1779_2|672128

>mRNA_7130-protein ID=mRNA_7130-protein|Name=jgi.p|Nanoce1779_2|672128|organism=Nannochloropsis oceanica|type=polypeptide|length=453bp
MRFSSLCIALLLVLAPAVFGLQEDDAINKGSRSRLVSKLKREVVTAKSGN
AAPFRHHSLQLKRGEKASNEEKLLMPVERGQGDEKSDEKEVRALLASKKD
KADKAFEEAEMGWTDEEEEEETNEFEEDRLAKDEDEDDWEDEDEDEDEDD
WEDEDKDEDEDDWEDEDEDEDEDDWEVDNDDGDVAPAILEGESADGIIIV
EADDMESLAKALKEAGATDEDIEEIMEEEAAFEELEEELEAEFGGVDEAK
AEAAGWEAGTVIAEKAMKQKGAGSEADEDVSDEKDEDEDMLDEEEDILDQ
EDEDMLDEDEDMLDEDEDMLDEEDGKLLDEDEDEEAVAASSKGAVTAEES
ISLEAASASVGGGHEEKSSSSSSRAGFIWALSGICGLMVLVAAVWKTAAR
HSSSDLYSMPNTTAFGSDASSQEQPFGLDAEASLTQHYGQYRRVTAHGQE
SR*

mRNA from alignment at scaffold_16:366259..369222-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7130 ID=mRNA_7130|Name=jgi.p|Nanoce1779_2|672128|organism=Nannochloropsis oceanica|type=mRNA|length=2964bp|location=Sequence derived from alignment at scaffold_16:366259..369222- (Nannochloropsis oceanica)
GGGCCGTTTAGGCTCGGACAAGCAGAATTGGTGTGTCGTGGAATATGGTC
CCCAGAAAAAACGGAGGGCGAGTGATGCGGTAACAGACCAAAGTGTAATG
GTGCTTATTTTATCTCACCCAAAGCTATTGGCCGTCATGGAATACGACAA
CGACGTAGACAGGAGTGTCTCAACTTGGTGACTCACGGATACGTTGCAAT
AAAATTTGTCGTGCATCGAGAAGACTCTGATGGCCTGCAGGTTGCAGCCC
AAAAAGTTGTTCCCAGAGTCCGCGAGCGATCTTTTTTCAAGAGGGGGCTG
CCATGTGTCTCTCCTAGGCCCTCCTAAGAAGCCCTTCTTTATTTTGCGAC
GCACTTGCCGTCACACCAATTTACACGGATACGCCCTTATTTGACCCGTG
GAGGCCGGGCCGAGCGTCTACTGCTTGCACCCAGCCACCTCTTTTGGCCC
ATATAGTTGTTCTCTCACCAACCATCCCGCTTAGTAGAGAAAATTCAAAA
GAACCAGGCTATCTAGCGAGAGCTGAAAGGATCGCAAGGATCGCAGTCAT
TAAGCCTCGGCCCTTCTGGAGAAGTGGCATTTCTTTTTATTCGTGGCCAA
CGCCTACGAACCAATCACTGAGTCACCGAGTACTCAAGTCACTCACGCCA
CCCTTTTCTCGCCTCTCCCTACAACCCGTACTCGCACATGCAGTGAGTAC
ACAAGCAACCGGATCACACAAATGCGATTTTCCTCATTGTGCATTGCACT
CCTGCTCGTTCTGGCCCCGGCTGTATTTGGGCTGCAGGAGGACGATGCAA
TCAACAAGGGCTCGCGCTCTCGCCTTGTCTCCAAGCTGAAGCGTGAAGTG
GTGACGGCGAAGAGCGGGAATGCTGCCCCGTTTCGTCACCATTCGCTTCA
ACTGAAGAGGGGAGAAAAGGCTAGCAACGAGGAGAAGCTGTTGATGCCTG
TGGAGAGAGGGCAGGGTGACGAGAAATCGGATGAGAAAGAGGTACGCGCC
TTGTTAGCGAGCAAGAAAGACAAGGCGGACAAAGCGTTTGAAGAAGCAGA
AATGGGTTGGACAGATGAGGAAGAAGAAGAGGAAACGAACGAATTTGAGG
AAGATCGACTCGCGAAGGACGAGGACGAGGACGACTGGGAGGATGAGGAC
GAGGACGAGGACGAGGACGACTGGGAGGATGAGGACAAGGACGAGGACGA
GGACGACTGGGAGGATGAGGATGAGGACGAGGACGAGGACGACTGGGAGG
TTGATAATGATGACGGTGATGTGGCGCCGGCTATTTTGGAAGGTGAGTCC
GCGGACGGAATCATAATCGTGGAGGCCGACGACATGGAGAGCTTGGCCAA
GGCGTTGAAGGAGGCTGGGGCCACCGACGAGGACATTGAGGAAATAATGG
AGGAAGAGGCGGCATTTGAAGAGCTGGAGGAGGAGTTGGAGGCCGAGTTC
GGTGGGGTCGATGAAGCCAAGGCTGAGGCGGCAGGATGGGAGGCAGGGAC
AGTTATTGCCGAGAAGGCCATGAAGCAGAAGGGTGCGGGTAGCGAGGCTG
ACGAGGACGTGTCGGACGAAAAAGACGAGGACGAGGACATGTTGGACGAG
GAAGAGGACATATTGGACCAAGAGGACGAAGATATGTTGGACGAGGACGA
GGACATGTTGGACGAGGACGAGGACATGTTGGACGAGGAGGACGGGAAGT
TGTTAGATGAGGACGAGGACGAGGAAGCTGTCGCCGCGAGTAGCAAGGGA
GCAGTTACTGCAGAAGAGTCAATTTCGCTGGAAGCTGCGTCGGCCAGCGT
GGGAGGAGGGCATGAGGAAAAGAGTTCCTCATCCTCGTCTCGCGCCGGAT
TCATCTGGGCTCTTTCAGGGATTTGTGGCCTCATGGTGCTTGTGGCGGCC
GTGTGGAAGACGGCGGCTCGTCATTCGTCGTCCGACTTGTACAGTATGCC
CAACACAACAGCCTTTGGTAGTGACGCTTCGTCGCAGGAGCAACCGTTTG
GCCTAGACGCCGAGGCCTCTCTGACGCAGCACTACGGCCAGTATCGCCGT
GTCACTGCGCATGGCCAAGAGTCTCGTTAAGATCCGTGGAAGCAAAAAAC
AGGATTATGCTTACCGGAAAGGGTGATGGACGAGGATAATCCAACGTATT
AGCATTGGATGTTGACTGCTCGATGTATAAATGATAATCACAAGAGGTCT
GGTTTGAATGAGACTCTGAAAGAAGAGGTCGAGAGAAGTAGGACGAGCAG
GGAGAAATTACTTTATTGACCGAAACCCAAAAAGATAGGAGAGAAATGCA
GATGGGGAAAAGTACTTAAGACTTTATCAAATAAAGTGGATTCTGAGGGG
AAATCGGGTAGTGTTATACTGCGGCCTTCCATTTTTCTTTCATTGGAATA
GCAAAAGCCCGGGGACCTATTTCAGGCATGTATTTCTGGGAAAACAAGTC
GAAGTGCTGTGCTATGAACTACTTCTTATCTTGCTGAGATGAGAAAGCCA
AGCTGCGAGTATCTAATCGCTTCCCTCAGGCTAGGTATTCCCAATCCTCA
CCTCGATATAGGAGGCGGGCAAGTACGACGGCACAGACAATAACTAAGAC
ATATTTTTTCTTTTCCCCTCTCCTCCCAGCTCTGTGTGGGCCATCAGAGG
ACTTTGCTGGGGAAAATCTGTCAAAGTCATAAAAGCTCGGCAAAATAAGG
TAAGAACATGCAACAATTTACAATTGTCGGAAGACTTTCCCTCGTGTTGA
AATCCTGAGAGGAGGCACGCTTGTATAAAAACACCTATGTTTGCATTTGT
CTTCGGATGGGTTGCACGAGATAATTTAATTATTGTAAGACGAGACGAAG
ACATAAGATGCCCATCTATCTAAGCATTTCGTGGATTCTTCCCCGAAGAA
GCCAGAAAGATGTGCGTTCATGCGCGTGCGGCTGCGATGTGAACGCTACA
TGCAAATGCATTTG

Coding sequence (CDS) from alignment at scaffold_16:366259..369222-

>mRNA_7130 ID=mRNA_7130|Name=jgi.p|Nanoce1779_2|672128|organism=Nannochloropsis oceanica|type=CDS|length=1359bp|location=Sequence derived from alignment at scaffold_16:366259..369222- (Nannochloropsis oceanica)
ATGCGATTTTCCTCATTGTGCATTGCACTCCTGCTCGTTCTGGCCCCGGC
TGTATTTGGGCTGCAGGAGGACGATGCAATCAACAAGGGCTCGCGCTCTC
GCCTTGTCTCCAAGCTGAAGCGTGAAGTGGTGACGGCGAAGAGCGGGAAT
GCTGCCCCGTTTCGTCACCATTCGCTTCAACTGAAGAGGGGAGAAAAGGC
TAGCAACGAGGAGAAGCTGTTGATGCCTGTGGAGAGAGGGCAGGGTGACG
AGAAATCGGATGAGAAAGAGGTACGCGCCTTGTTAGCGAGCAAGAAAGAC
AAGGCGGACAAAGCGTTTGAAGAAGCAGAAATGGGTTGGACAGATGAGGA
AGAAGAAGAGGAAACGAACGAATTTGAGGAAGATCGACTCGCGAAGGACG
AGGACGAGGACGACTGGGAGGATGAGGACGAGGACGAGGACGAGGACGAC
TGGGAGGATGAGGACAAGGACGAGGACGAGGACGACTGGGAGGATGAGGA
TGAGGACGAGGACGAGGACGACTGGGAGGTTGATAATGATGACGGTGATG
TGGCGCCGGCTATTTTGGAAGGTGAGTCCGCGGACGGAATCATAATCGTG
GAGGCCGACGACATGGAGAGCTTGGCCAAGGCGTTGAAGGAGGCTGGGGC
CACCGACGAGGACATTGAGGAAATAATGGAGGAAGAGGCGGCATTTGAAG
AGCTGGAGGAGGAGTTGGAGGCCGAGTTCGGTGGGGTCGATGAAGCCAAG
GCTGAGGCGGCAGGATGGGAGGCAGGGACAGTTATTGCCGAGAAGGCCAT
GAAGCAGAAGGGTGCGGGTAGCGAGGCTGACGAGGACGTGTCGGACGAAA
AAGACGAGGACGAGGACATGTTGGACGAGGAAGAGGACATATTGGACCAA
GAGGACGAAGATATGTTGGACGAGGACGAGGACATGTTGGACGAGGACGA
GGACATGTTGGACGAGGAGGACGGGAAGTTGTTAGATGAGGACGAGGACG
AGGAAGCTGTCGCCGCGAGTAGCAAGGGAGCAGTTACTGCAGAAGAGTCA
ATTTCGCTGGAAGCTGCGTCGGCCAGCGTGGGAGGAGGGCATGAGGAAAA
GAGTTCCTCATCCTCGTCTCGCGCCGGATTCATCTGGGCTCTTTCAGGGA
TTTGTGGCCTCATGGTGCTTGTGGCGGCCGTGTGGAAGACGGCGGCTCGT
CATTCGTCGTCCGACTTGTACAGTATGCCCAACACAACAGCCTTTGGTAG
TGACGCTTCGTCGCAGGAGCAACCGTTTGGCCTAGACGCCGAGGCCTCTC
TGACGCAGCACTACGGCCAGTATCGCCGTGTCACTGCGCATGGCCAAGAG
TCTCGTTAA

Synonyms

Publications