jgi.p|Nanoce1779_2|596713, mRNA_6898 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596713
Unique NamemRNA_6898
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1281
Alignment locationscaffold_17:379578..380858 -

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Properties
Property NameValue
TranscriptId596799
TrackFilteredModels2
ProteinId596713
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:379578..380858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596713gene_6898Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596713mRNA_6898-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6898CDS_6898Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6898 ID=mRNA_6898|Name=jgi.p|Nanoce1779_2|596713|organism=Nannochloropsis oceanica|type=mRNA|length=1281bp
CCAGTCCCCTAAGCATCTGCAGTCGTGTCACGACAAATTGTACGAATAAT
CGTAGAAAAGCATGTTCATGATATGTCTCTACGACGGGGAACTTCGGGTC
TATCAAATCAGCAAATACCGCGGAGGGACGTTGTCCGTACGCCAGGCCTG
CACAGTTAAATACTTGCTCGAAATCACACACGTCCTTCCGGAGGGCCGGC
TCGTGTTTTAACGCCTCCATGGCCTGCGTAAAGAGGCCCGAATGCTCTTG
GCATTGAACTTGGGAGTAGCTCACGTACGTGAGGAGTTGGTCCATCCCTG
GCAGACTCTTTGAGAGGAGCATGGAGGAGAGTCGCGCTGCTGCTTGCCGC
ATCTCCTCCGACAGGACAACTGGTACCTGCTTCTGTGGAGGAAACTGCTG
TTCCTGCTGTTGAAAGGAGCCCCTTCGCTTACCAGGCCCAGTACTGGAGG
GCTCGGGGGGCATGACGAGGCTGGAGGAACGCAAGGAGAAAGTGCAGGTG
CTGGTGTTGGTTGTGCTTGTGCTGCTCGTGGAAGGACAGGAAACTGTCCC
TCCCGCCGGGCTGCTGACCTTGACTTGGCTATCAATGGCCTTCATGGCCT
TTGCGGTCTTGGCATTTTTGCTATTGCTACTACTGCTGCCGTTGCTACTG
CTACTACCCACTGGCACGAAGCCCAGGATGAGGGGAGCCTCCAACTCCCG
CGGGGGGGGAGGCGGCTGCATGGCTTGGCCGTGTGGATAGACCACCTCGG
CCACAAGGGTCTTTATTCGCTTGCAAGTAGAACGGTGACCAATAATGACA
CGTCGCTTCACCCCTTGCTTCGGCTCGTCACCCGCGGAACCCACAATGTG
TACAACCTTGGATGGGGGCTTTTGGTGATGCCCGGCGCCCGTCACAGCTG
CGGGCATTTGGCCCGGCAACATGGGGGCAGGCGCGTGCTTGTATTGCTTG
GTGATGGTGGAGGAAATGCCAGCGGGCGAATTCCCCTTCTGAGTGGTGTT
GGATTTGTGGACGGGTGACTCAGGGGGAGATGATGGGTGGGGAATTGTTT
TGATGGGGATGGAGCTTGTTGTTGACGCCGTGGCCCATGGCGCTAAAAGA
ACATTGCTGCCATGGCGGCGGCTGCCGCCGCTCTTGCTGCTGCTGGCGAA
AACAGGGTGAGCGAAAGAAGACATGGTGTTCAATCTAGTACGTGATCTCT
GTGTGTTGTTGTGCCTGTGTCAAGGACTTGAGGTGGGAGAAGCAAGCGAC
TATCTCGGCAACTGTCGAAGTTTGTGAGCCT
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protein sequence of jgi.p|Nanoce1779_2|596713

>mRNA_6898-protein ID=mRNA_6898-protein|Name=jgi.p|Nanoce1779_2|596713|organism=Nannochloropsis oceanica|type=polypeptide|length=93bp
MTRLEERKEKVQVLVLVVLVLLVEGQETVPPAGLLTLTWLSMAFMAFAVL
AFLLLLLLLPLLLLLPTGTKPRMRGASNSRGGGGGCMAWPCG*
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mRNA from alignment at scaffold_17:379578..380858-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6898 ID=mRNA_6898|Name=jgi.p|Nanoce1779_2|596713|organism=Nannochloropsis oceanica|type=mRNA|length=1281bp|location=Sequence derived from alignment at scaffold_17:379578..380858- (Nannochloropsis oceanica)
CCAGTCCCCTAAGCATCTGCAGTCGTGTCACGACAAATTGTACGAATAAT
CGTAGAAAAGCATGTTCATGATATGTCTCTACGACGGGGAACTTCGGGTC
TATCAAATCAGCAAATACCGCGGAGGGACGTTGTCCGTACGCCAGGCCTG
CACAGTTAAATACTTGCTCGAAATCACACACGTCCTTCCGGAGGGCCGGC
TCGTGTTTTAACGCCTCCATGGCCTGCGTAAAGAGGCCCGAATGCTCTTG
GCATTGAACTTGGGAGTAGCTCACGTACGTGAGGAGTTGGTCCATCCCTG
GCAGACTCTTTGAGAGGAGCATGGAGGAGAGTCGCGCTGCTGCTTGCCGC
ATCTCCTCCGACAGGACAACTGGTACCTGCTTCTGTGGAGGAAACTGCTG
TTCCTGCTGTTGAAAGGAGCCCCTTCGCTTACCAGGCCCAGTACTGGAGG
GCTCGGGGGGCATGACGAGGCTGGAGGAACGCAAGGAGAAAGTGCAGGTG
CTGGTGTTGGTTGTGCTTGTGCTGCTCGTGGAAGGACAGGAAACTGTCCC
TCCCGCCGGGCTGCTGACCTTGACTTGGCTATCAATGGCCTTCATGGCCT
TTGCGGTCTTGGCATTTTTGCTATTGCTACTACTGCTGCCGTTGCTACTG
CTACTACCCACTGGCACGAAGCCCAGGATGAGGGGAGCCTCCAACTCCCG
CGGGGGGGGAGGCGGCTGCATGGCTTGGCCGTGTGGATAGACCACCTCGG
CCACAAGGGTCTTTATTCGCTTGCAAGTAGAACGGTGACCAATAATGACA
CGTCGCTTCACCCCTTGCTTCGGCTCGTCACCCGCGGAACCCACAATGTG
TACAACCTTGGATGGGGGCTTTTGGTGATGCCCGGCGCCCGTCACAGCTG
CGGGCATTTGGCCCGGCAACATGGGGGCAGGCGCGTGCTTGTATTGCTTG
GTGATGGTGGAGGAAATGCCAGCGGGCGAATTCCCCTTCTGAGTGGTGTT
GGATTTGTGGACGGGTGACTCAGGGGGAGATGATGGGTGGGGAATTGTTT
TGATGGGGATGGAGCTTGTTGTTGACGCCGTGGCCCATGGCGCTAAAAGA
ACATTGCTGCCATGGCGGCGGCTGCCGCCGCTCTTGCTGCTGCTGGCGAA
AACAGGGTGAGCGAAAGAAGACATGGTGTTCAATCTAGTACGTGATCTCT
GTGTGTTGTTGTGCCTGTGTCAAGGACTTGAGGTGGGAGAAGCAAGCGAC
TATCTCGGCAACTGTCGAAGTTTGTGAGCCT
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Coding sequence (CDS) from alignment at scaffold_17:379578..380858-

>mRNA_6898 ID=mRNA_6898|Name=jgi.p|Nanoce1779_2|596713|organism=Nannochloropsis oceanica|type=CDS|length=279bp|location=Sequence derived from alignment at scaffold_17:379578..380858- (Nannochloropsis oceanica)
ATGACGAGGCTGGAGGAACGCAAGGAGAAAGTGCAGGTGCTGGTGTTGGT
TGTGCTTGTGCTGCTCGTGGAAGGACAGGAAACTGTCCCTCCCGCCGGGC
TGCTGACCTTGACTTGGCTATCAATGGCCTTCATGGCCTTTGCGGTCTTG
GCATTTTTGCTATTGCTACTACTGCTGCCGTTGCTACTGCTACTACCCAC
TGGCACGAAGCCCAGGATGAGGGGAGCCTCCAACTCCCGCGGGGGGGGAG
GCGGCTGCATGGCTTGGCCGTGTGGATAG
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Synonyms
Publications