jgi.p|Nanoce1779_2|599954, mRNA_7767 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599954
Unique NamemRNA_7767
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1385
Alignment locationscaffold_21:274868..276252 +

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Properties
Property NameValue
TranscriptId600040
TrackFilteredModels2
ProteinId599954
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:274868..276252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599954gene_7767Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599954mRNA_7767-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7767CDS_7767Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7767 ID=mRNA_7767|Name=jgi.p|Nanoce1779_2|599954|organism=Nannochloropsis oceanica|type=mRNA|length=1385bp
AACAGACTCCCGGAGCTAGACCAAAGAAGACAGCTACGACGACGGCGCTT
GCTTATCCTGTCGTCAGTCAGTCCGTGTTTCCCTCCCATTCACCTCTTCC
GCAGCATTACCACGGCCGGCGCCGCCACCATTATTTCCGCCTCGTTTTAA
TTAGTATGCTGCAGTCCTTCGAAGGCTTCTTCCACGTGTTGCTCGATGCT
GTAAAGGCGCTGCTGGCCTGGCTGCAGGAGGCACTGTGGCCGAGCTCCGT
GGCGTTGGATGGTGGGCGACGCGTGCGCATCAAAAAACAGTTGGCCGAGG
GTGGGTTTGGGTACGTCTACCTCGCTCAGGACGCTCACACAGGCGAAGTG
TACGCTCTGAAAAAGATGCTATGCCAAGTACGAGAGCAACTCGAAGCTGC
CAAACGTGAAATTTTTTACCACCGGGAGCTGCGACACCCCAACCTTTTGC
CCCTGATTGACAGTCGCGTGCATCAGCAGCACCCCGTCCCAAGCAGCAGC
ACGGGCATCTATGCCTACCTCCTCTTTCCTTACATATCAGGCGGTTCCCT
AAGAGATGAGATCGATAAGAGGATTTTGCGGCCTTTGATGACCACGGGCG
TGATGGGGACATGGCCTGAAGCGGCTTTACTCCGTTTGTTTCATGGGGTT
CTCCTAGGCGTCCAAGCGCTGCACGAACACAAACCAGCCCTAGCCCACCG
GGACATAAAACCCGAAAATGTGCTACTAAAAGCCGATGGAACAACGCCTA
TTCTCATTGATTTTGGTTCCATGATGCCGGCGGATCGGAGAGTGGAGAAT
AGGTCAGAGGCGCTGTTGATACAGGAGGAAGCCACACAGCATTCCACGAT
GACATTCCGAGCACCGGAACTATTCGACGTTAGTAGTGATGCGTGTTTAG
ACGCCAAAGTGGATGTGTGGTCGCTGGGCTGCTTGCTATTTGCGCTCATG
TTTGGTTATTCCCCCTTCGAGGTTGAATTCACTGAGAATGGAGGGGCGAG
GGAGGGAGAAAGGCCACGGGTGGTGGAGTGTACTTTTCTACGGGTTATCG
GCAAGATACCCTGGCCGGCGCGACATGGCTATTCGGAGGGAGTGGTAGAG
ATTGTTGTATGGATGTTGGAGCAGGATCCCAGGAAGAGGCCGGGGGTTGG
GGAGGTGCTGGCGAGGGTGGAGAGGTCGCTCACTGCGTATGCTTTTGAGG
CGGAAGGTGGATGGGAGGGGAGGAGGAAGGGAGGAATGGTGGCTGTGGAC
ATGGTGCCGTTGAACAGAGGAGAAGGGTGACAGTTAGTACGGAGGGATGG
AGGGAAGGACAATTAAGTGAATGGTGTGTCAAAAGCACAAGACACAAAAA
AATGTAATTGAACTCGTATGTGTACCTTTACATAA
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protein sequence of jgi.p|Nanoce1779_2|599954

>mRNA_7767-protein ID=mRNA_7767-protein|Name=jgi.p|Nanoce1779_2|599954|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MLQSFEGFFHVLLDAVKALLAWLQEALWPSSVALDGGRRVRIKKQLAEGG
FGYVYLAQDAHTGEVYALKKMLCQVREQLEAAKREIFYHRELRHPNLLPL
IDSRVHQQHPVPSSSTGIYAYLLFPYISGGSLRDEIDKRILRPLMTTGVM
GTWPEAALLRLFHGVLLGVQALHEHKPALAHRDIKPENVLLKADGTTPIL
IDFGSMMPADRRVENRSEALLIQEEATQHSTMTFRAPELFDVSSDACLDA
KVDVWSLGCLLFALMFGYSPFEVEFTENGGAREGERPRVVECTFLRVIGK
IPWPARHGYSEGVVEIVVWMLEQDPRKRPGVGEVLARVERSLTAYAFEAE
GGWEGRRKGGMVAVDMVPLNRGEG*
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mRNA from alignment at scaffold_21:274868..276252+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7767 ID=mRNA_7767|Name=jgi.p|Nanoce1779_2|599954|organism=Nannochloropsis oceanica|type=mRNA|length=1385bp|location=Sequence derived from alignment at scaffold_21:274868..276252+ (Nannochloropsis oceanica)
AACAGACTCCCGGAGCTAGACCAAAGAAGACAGCTACGACGACGGCGCTT
GCTTATCCTGTCGTCAGTCAGTCCGTGTTTCCCTCCCATTCACCTCTTCC
GCAGCATTACCACGGCCGGCGCCGCCACCATTATTTCCGCCTCGTTTTAA
TTAGTATGCTGCAGTCCTTCGAAGGCTTCTTCCACGTGTTGCTCGATGCT
GTAAAGGCGCTGCTGGCCTGGCTGCAGGAGGCACTGTGGCCGAGCTCCGT
GGCGTTGGATGGTGGGCGACGCGTGCGCATCAAAAAACAGTTGGCCGAGG
GTGGGTTTGGGTACGTCTACCTCGCTCAGGACGCTCACACAGGCGAAGTG
TACGCTCTGAAAAAGATGCTATGCCAAGTACGAGAGCAACTCGAAGCTGC
CAAACGTGAAATTTTTTACCACCGGGAGCTGCGACACCCCAACCTTTTGC
CCCTGATTGACAGTCGCGTGCATCAGCAGCACCCCGTCCCAAGCAGCAGC
ACGGGCATCTATGCCTACCTCCTCTTTCCTTACATATCAGGCGGTTCCCT
AAGAGATGAGATCGATAAGAGGATTTTGCGGCCTTTGATGACCACGGGCG
TGATGGGGACATGGCCTGAAGCGGCTTTACTCCGTTTGTTTCATGGGGTT
CTCCTAGGCGTCCAAGCGCTGCACGAACACAAACCAGCCCTAGCCCACCG
GGACATAAAACCCGAAAATGTGCTACTAAAAGCCGATGGAACAACGCCTA
TTCTCATTGATTTTGGTTCCATGATGCCGGCGGATCGGAGAGTGGAGAAT
AGGTCAGAGGCGCTGTTGATACAGGAGGAAGCCACACAGCATTCCACGAT
GACATTCCGAGCACCGGAACTATTCGACGTTAGTAGTGATGCGTGTTTAG
ACGCCAAAGTGGATGTGTGGTCGCTGGGCTGCTTGCTATTTGCGCTCATG
TTTGGTTATTCCCCCTTCGAGGTTGAATTCACTGAGAATGGAGGGGCGAG
GGAGGGAGAAAGGCCACGGGTGGTGGAGTGTACTTTTCTACGGGTTATCG
GCAAGATACCCTGGCCGGCGCGACATGGCTATTCGGAGGGAGTGGTAGAG
ATTGTTGTATGGATGTTGGAGCAGGATCCCAGGAAGAGGCCGGGGGTTGG
GGAGGTGCTGGCGAGGGTGGAGAGGTCGCTCACTGCGTATGCTTTTGAGG
CGGAAGGTGGATGGGAGGGGAGGAGGAAGGGAGGAATGGTGGCTGTGGAC
ATGGTGCCGTTGAACAGAGGAGAAGGGTGACAGTTAGTACGGAGGGATGG
AGGGAAGGACAATTAAGTGAATGGTGTGTCAAAAGCACAAGACACAAAAA
AATGTAATTGAACTCGTATGTGTACCTTTACATAA
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Coding sequence (CDS) from alignment at scaffold_21:274868..276252+

>mRNA_7767 ID=mRNA_7767|Name=jgi.p|Nanoce1779_2|599954|organism=Nannochloropsis oceanica|type=CDS|length=1125bp|location=Sequence derived from alignment at scaffold_21:274868..276252+ (Nannochloropsis oceanica)
ATGCTGCAGTCCTTCGAAGGCTTCTTCCACGTGTTGCTCGATGCTGTAAA
GGCGCTGCTGGCCTGGCTGCAGGAGGCACTGTGGCCGAGCTCCGTGGCGT
TGGATGGTGGGCGACGCGTGCGCATCAAAAAACAGTTGGCCGAGGGTGGG
TTTGGGTACGTCTACCTCGCTCAGGACGCTCACACAGGCGAAGTGTACGC
TCTGAAAAAGATGCTATGCCAAGTACGAGAGCAACTCGAAGCTGCCAAAC
GTGAAATTTTTTACCACCGGGAGCTGCGACACCCCAACCTTTTGCCCCTG
ATTGACAGTCGCGTGCATCAGCAGCACCCCGTCCCAAGCAGCAGCACGGG
CATCTATGCCTACCTCCTCTTTCCTTACATATCAGGCGGTTCCCTAAGAG
ATGAGATCGATAAGAGGATTTTGCGGCCTTTGATGACCACGGGCGTGATG
GGGACATGGCCTGAAGCGGCTTTACTCCGTTTGTTTCATGGGGTTCTCCT
AGGCGTCCAAGCGCTGCACGAACACAAACCAGCCCTAGCCCACCGGGACA
TAAAACCCGAAAATGTGCTACTAAAAGCCGATGGAACAACGCCTATTCTC
ATTGATTTTGGTTCCATGATGCCGGCGGATCGGAGAGTGGAGAATAGGTC
AGAGGCGCTGTTGATACAGGAGGAAGCCACACAGCATTCCACGATGACAT
TCCGAGCACCGGAACTATTCGACGTTAGTAGTGATGCGTGTTTAGACGCC
AAAGTGGATGTGTGGTCGCTGGGCTGCTTGCTATTTGCGCTCATGTTTGG
TTATTCCCCCTTCGAGGTTGAATTCACTGAGAATGGAGGGGCGAGGGAGG
GAGAAAGGCCACGGGTGGTGGAGTGTACTTTTCTACGGGTTATCGGCAAG
ATACCCTGGCCGGCGCGACATGGCTATTCGGAGGGAGTGGTAGAGATTGT
TGTATGGATGTTGGAGCAGGATCCCAGGAAGAGGCCGGGGGTTGGGGAGG
TGCTGGCGAGGGTGGAGAGGTCGCTCACTGCGTATGCTTTTGAGGCGGAA
GGTGGATGGGAGGGGAGGAGGAAGGGAGGAATGGTGGCTGTGGACATGGT
GCCGTTGAACAGAGGAGAAGGGTGA
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Synonyms
Publications