jgi.p|Nanoce1779_2|600069, mRNA_7798 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600069
Unique NamemRNA_7798
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1522
Alignment locationscaffold_21:357632..359375 -

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Properties
Property NameValue
TranscriptId600155
TrackFilteredModels2
ProteinId600069
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:357632..359375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600069gene_7798Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600069mRNA_7798-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7798CDS_7798Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7798 ID=mRNA_7798|Name=jgi.p|Nanoce1779_2|600069|organism=Nannochloropsis oceanica|type=mRNA|length=1522bp
AGCGCTGTTTGCCCTTCTCCCACATACCACACACCACCGTCCCGCAACAC
AGAGACGCGTCTTCTTTGCTCCGGCAACCGACAATCCCAATATCAGCACC
ACCATGGCTCTGAAACTCTACACCAACCCCGGCAACTTTCGGGCCTTTAA
AATCCTGGTTGCTGCCCTGTATAACGGCGTGGATATTGAGGTTGTGGACC
TTGATCTGGCGGCGAAGAAGAGCTCGGACATCCTGGCCAAGTCTCCGGCG
GGCAAGGTTCCCGTGCTCGAGACCCCCCAGGGTCTTCTGTTTGAGAGCAA
TGCCATCGCGCGCTACATTGCCCGTGCCCGCCGTGATACCGACCTGTATG
GTGTGTCGTTTTTTGATTCTGGCCTGGTAGATTCCTGGATTGATTTTGCG
GCGCACGAGGTCGAGCTCCCGGCGACGCTGTGGGTGTACCCGGTGTTCGG
GTACCTCCCTCACAACGCCGCCGTGACCGAGAAGGCCAAAGCTGACTTGG
GCGCAGCTTTGGAGACGCTCGATGCCCACTTGGCGGACAAGACATATCTG
GTGGGGGATAAAGTCACCCTGGCCGACATCACAGTTGCCTCTGCGTTGGT
CTACCCCTACAAGATCGTCATGAGCCCCGAGTACCGTTCTCAGTACCCGC
ACGTCCTCCGCTGGTTCCTCACCATCGTGAACCAGCCTCAGTTCAAGAAT
GTGACCGGCGACGTCGTTCTGGCCGCGAAGGAGCTGGTGCCTTCTGGTGC
TCCTCCCGCTCTTGCGATCCCCGCGAAGGGTGCCAAGAAGGAGAAGAAGG
ACAAGGCCCCCAAGGCGGCTGCTCCCAAGCAAGAGAAGAAGAAGGAGGCG
GCGCCTCCAGCGGCAAAGTCCGGGGAGGACTTGGAGGAACAGCTGGCAAA
AGAATCGAAGAAGGCCGCCTCGGAGCACCCGCTAAAGATAATGGATAGGG
ACGCGCCATCGGAGTTTGTGATGGACACATGGAAGAAGACGTATTCCAAT
GCGCGTTCTTACGATGCGGCAATGGATGAGTTCTGGAAGGTATTTGATAG
CACGGGCTACTCGCTTTGGTTCTGTGAGTACCAGTACAACAGTGAGCTCC
AGAAGCTTTTCATGACGTGCAATCTCGTGAGCGGCTTTGTCCAGCGAACG
GACGAGTTGCGGAAGTGGGCTTTTGGGTGCATGTGGATCACAGGGGAGGA
TGCACCAGGGAAACAGGTGGTGAGTGGGTGCTGGTTGATGAGGGGACAGA
GCGACGAGTACATCAAGAATGCCAACCCGGACGCGGAATTCTACACGTGG
ACCAAAGTGGCCACGCCCGTGTCGGACGCAGACAAGAAGAAGGTGCAGGA
GTACTGGTGCAGTGATGAAAGCTTGGCAGGGCTCCCCGTGTTGGATTGCA
AGGTGTTCAAGTAAGCAACGTCAAAGTGCATGTCCCAAGGGGGTTGGAAG
GGAGGGAGGGAGGGAGGGAGAGGGTTGCAGAGGGTTGGTTGTAGGGCGGA
AAAGGAGATGGTGAACTCGGTG
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protein sequence of jgi.p|Nanoce1779_2|600069

>mRNA_7798-protein ID=mRNA_7798-protein|Name=jgi.p|Nanoce1779_2|600069|organism=Nannochloropsis oceanica|type=polypeptide|length=437bp
MALKLYTNPGNFRAFKILVAALYNGVDIEVVDLDLAAKKSSDILAKSPAG
KVPVLETPQGLLFESNAIARYIARARRDTDLYGVSFFDSGLVDSWIDFAA
HEVELPATLWVYPVFGYLPHNAAVTEKAKADLGAALETLDAHLADKTYLV
GDKVTLADITVASALVYPYKIVMSPEYRSQYPHVLRWFLTIVNQPQFKNV
TGDVVLAAKELVPSGAPPALAIPAKGAKKEKKDKAPKAAAPKQEKKKEAA
PPAAKSGEDLEEQLAKESKKAASEHPLKIMDRDAPSEFVMDTWKKTYSNA
RSYDAAMDEFWKVFDSTGYSLWFCEYQYNSELQKLFMTCNLVSGFVQRTD
ELRKWAFGCMWITGEDAPGKQVVSGCWLMRGQSDEYIKNANPDAEFYTWT
KVATPVSDADKKKVQEYWCSDESLAGLPVLDCKVFK*
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mRNA from alignment at scaffold_21:357632..359375-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7798 ID=mRNA_7798|Name=jgi.p|Nanoce1779_2|600069|organism=Nannochloropsis oceanica|type=mRNA|length=1744bp|location=Sequence derived from alignment at scaffold_21:357632..359375- (Nannochloropsis oceanica)
AGCGCTGTTTGCCCTTCTCCCACATACCACACACCACCGTCCCGCAACAC
AGAGACGCGTCTTCTTTGCTCCGGCAACCGACAATCCCAATATCAGCACC
ACCATGGCTCTGGTAAGTACGAATGGTCTGGGAAAGGAATCAACGATGGA
GGGAGGACGTGCACTGCACCCCTCGTCATTTCATTGAGCGCAACGAACAC
AGCTAGTGTTTTCAAAGCAGTCCCAGTCTCGCTCTATGTAGACGGGCGCA
ACAACAGAATCCGCGTGTCGTGCTTTGCTCAGAAACGCCAGCACTCACCC
TCCCTCCGTCCACAACCCTCTCGTCCTCTCACAGAAACTCTACACCAACC
CCGGCAACTTTCGGGCCTTTAAAATCCTGGTTGCTGCCCTGTATAACGGC
GTGGATATTGAGGTTGTGGACCTTGATCTGGCGGCGAAGAAGAGCTCGGA
CATCCTGGCCAAGTCTCCGGCGGGCAAGGTTCCCGTGCTCGAGACCCCCC
AGGGTCTTCTGTTTGAGAGCAATGCCATCGCGCGCTACATTGCCCGTGCC
CGCCGTGATACCGACCTGTATGGTGTGTCGTTTTTTGATTCTGGCCTGGT
AGATTCCTGGATTGATTTTGCGGCGCACGAGGTCGAGCTCCCGGCGACGC
TGTGGGTGTACCCGGTGTTCGGGTACCTCCCTCACAACGCCGCCGTGACC
GAGAAGGCCAAAGCTGACTTGGGCGCAGCTTTGGAGACGCTCGATGCCCA
CTTGGCGGACAAGACATATCTGGTGGGGGATAAAGTCACCCTGGCCGACA
TCACAGTTGCCTCTGCGTTGGTCTACCCCTACAAGATCGTCATGAGCCCC
GAGTACCGTTCTCAGTACCCGCACGTCCTCCGCTGGTTCCTCACCATCGT
GAACCAGCCTCAGTTCAAGAATGTGACCGGCGACGTCGTTCTGGCCGCGA
AGGAGCTGGTGCCTTCTGGTGCTCCTCCCGCTCTTGCGATCCCCGCGAAG
GGTGCCAAGAAGGAGAAGAAGGACAAGGCCCCCAAGGCGGCTGCTCCCAA
GCAAGAGAAGAAGAAGGAGGCGGCGCCTCCAGCGGCAAAGTCCGGGGAGG
ACTTGGAGGAACAGCTGGCAAAAGAATCGAAGAAGGCCGCCTCGGAGCAC
CCGCTAAAGATAATGGATAGGGACGCGCCATCGGAGTTTGTGATGGACAC
ATGGAAGAAGACGTATTCCAATGCGCGTTCTTACGATGCGGCAATGGATG
AGTTCTGGAAGGTATTTGATAGCACGGGCTACTCGCTTTGGTTCTGTGAG
TACCAGTACAACAGTGAGCTCCAGAAGCTTTTCATGACGTGCAATCTCGT
GAGCGGCTTTGTCCAGCGAACGGACGAGTTGCGGAAGTGGGCTTTTGGGT
GCATGTGGATCACAGGGGAGGATGCACCAGGGAAACAGGTGGTGAGTGGG
TGCTGGTTGATGAGGGGACAGAGCGACGAGTACATCAAGAATGCCAACCC
GGACGCGGAATTCTACACGTGGACCAAAGTGGCCACGCCCGTGTCGGACG
CAGACAAGAAGAAGGTGCAGGAGTACTGGTGCAGTGATGAAAGCTTGGCA
GGGCTCCCCGTGTTGGATTGCAAGGTGTTCAAGTAAGCAACGTCAAAGTG
CATGTCCCAAGGGGGTTGGAAGGGAGGGAGGGAGGGAGGGAGAGGGTTGC
AGAGGGTTGGTTGTAGGGCGGAAAAGGAGATGGTGAACTCGGTG
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Coding sequence (CDS) from alignment at scaffold_21:357632..359375-

>mRNA_7798 ID=mRNA_7798|Name=jgi.p|Nanoce1779_2|600069|organism=Nannochloropsis oceanica|type=CDS|length=2622bp|location=Sequence derived from alignment at scaffold_21:357632..359375- (Nannochloropsis oceanica)
AAACTCTACACCAACCCCGGCAACTTTCGGGCCTTTAAAATCCTGGTTGC
TGCCCTGTATAACGGCGTGGATATTGAGGTTGTGGACCTTGATCTGGCGG
CGAAGAAGAGCTCGGACATCCTGGCCAAGTCTCCGGCGGGCAAGGTTCCC
GTGCTCGAGACCCCCCAGGGTCTTCTGTTTGAGAGCAATGCCATCGCGCG
CTACATTGCCCGTGCCCGCCGTGATACCGACCTGTATGGTGTGTCGTTTT
TTGATTCTGGCCTGGTAGATTCCTGGATTGATTTTGCGGCGCACGAGGTC
GAGCTCCCGGCGACGCTGTGGGTGTACCCGGTGTTCGGGTACCTCCCTCA
CAACGCCGCCGTGACCGAGAAGGCCAAAGCTGACTTGGGCGCAGCTTTGG
AGACGCTCGATGCCCACTTGGCGGACAAGACATATCTGGTGGGGGATAAA
GTCACCCTGGCCGACATCACAGTTGCCTCTGCGTTGGTCTACCCCTACAA
GATCGTCATGAGCCCCGAGTACCGTTCTCAGTACCCGCACGTCCTCCGCT
GGTTCCTCACCATCGTGAACCAGCCTCAGTTCAAGAATGTGACCGGCGAC
GTCGTTCTGGCCGCGAAGGAGCTGGTGCCTTCTGGTGCTCCTCCCGCTCT
TGCGATCCCCGCGAAGGGTGCCAAGAAGGAGAAGAAGGACAAGGCCCCCA
AGGCGGCTGCTCCCAAGCAAGAGAAGAAGAAGGAGGCGGCGCCTCCAGCG
GCAAAGTCCGGGGAGGACTTGGAGGAACAGCTGGCAAAAGAATCGAAGAA
GGCCGCCTCGGAGCACCCGCTAAAGATAATGGATAGGGACGCGCCATCGG
AGTTTGTGATGGACACATGGAAGAAGACGTATTCCAATGCGCGTTCTTAC
GATGCGGCAATGGATGAGTTCTGGAAGGTATTTGATAGCACGGGCTACTC
GCTTTGGTTCTGTGAGTACCAGTACAACAGTGAGCTCCAGAAGCTTTTCA
TGACGTGCAATCTCGTGAGCGGCTTTGTCCAGCGAACGGACGAGTTGCGG
AAGTGGGCTTTTGGGTGCATGTGGATCACAGGGGAGGATGCACCAGGGAA
ACAGGTGGTGAGTGGGTGCTGGTTGATGAGGGGACAGAGCGACGAGTACA
TCAAGAATGCCAACCCGGACGCGGAATTCTACACGTGGACCAAAGTGGCC
ACGCCCGTGTCGGACGCAGACAAGAAGAAGGTGCAGGAGTACTGGTGCAG
TGATGAAAGCTTGGCAGGGCTCCCCGTGTTGGATTGCAAGGTGTTCAAGT
AAATGGCTCTGAAACTCTACACCAACCCCGGCAACTTTCGGGCCTTTAAA
ATCCTGGTTGCTGCCCTGTATAACGGCGTGGATATTGAGGTTGTGGACCT
TGATCTGGCGGCGAAGAAGAGCTCGGACATCCTGGCCAAGTCTCCGGCGG
GCAAGGTTCCCGTGCTCGAGACCCCCCAGGGTCTTCTGTTTGAGAGCAAT
GCCATCGCGCGCTACATTGCCCGTGCCCGCCGTGATACCGACCTGTATGG
TGTGTCGTTTTTTGATTCTGGCCTGGTAGATTCCTGGATTGATTTTGCGG
CGCACGAGGTCGAGCTCCCGGCGACGCTGTGGGTGTACCCGGTGTTCGGG
TACCTCCCTCACAACGCCGCCGTGACCGAGAAGGCCAAAGCTGACTTGGG
CGCAGCTTTGGAGACGCTCGATGCCCACTTGGCGGACAAGACATATCTGG
TGGGGGATAAAGTCACCCTGGCCGACATCACAGTTGCCTCTGCGTTGGTC
TACCCCTACAAGATCGTCATGAGCCCCGAGTACCGTTCTCAGTACCCGCA
CGTCCTCCGCTGGTTCCTCACCATCGTGAACCAGCCTCAGTTCAAGAATG
TGACCGGCGACGTCGTTCTGGCCGCGAAGGAGCTGGTGCCTTCTGGTGCT
CCTCCCGCTCTTGCGATCCCCGCGAAGGGTGCCAAGAAGGAGAAGAAGGA
CAAGGCCCCCAAGGCGGCTGCTCCCAAGCAAGAGAAGAAGAAGGAGGCGG
CGCCTCCAGCGGCAAAGTCCGGGGAGGACTTGGAGGAACAGCTGGCAAAA
GAATCGAAGAAGGCCGCCTCGGAGCACCCGCTAAAGATAATGGATAGGGA
CGCGCCATCGGAGTTTGTGATGGACACATGGAAGAAGACGTATTCCAATG
CGCGTTCTTACGATGCGGCAATGGATGAGTTCTGGAAGGTATTTGATAGC
ACGGGCTACTCGCTTTGGTTCTGTGAGTACCAGTACAACAGTGAGCTCCA
GAAGCTTTTCATGACGTGCAATCTCGTGAGCGGCTTTGTCCAGCGAACGG
ACGAGTTGCGGAAGTGGGCTTTTGGGTGCATGTGGATCACAGGGGAGGAT
GCACCAGGGAAACAGGTGGTGAGTGGGTGCTGGTTGATGAGGGGACAGAG
CGACGAGTACATCAAGAATGCCAACCCGGACGCGGAATTCTACACGTGGA
CCAAAGTGGCCACGCCCGTGTCGGACGCAGACAAGAAGAAGGTGCAGGAG
TACTGGTGCAGTGATGAAAGCTTGGCAGGGCTCCCCGTGTTGGATTGCAA
GGTGTTCAAGTAAATGGCTCTG
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Synonyms
Publications