jgi.p|Nanoce1779_2|600197, mRNA_7831 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600197
Unique NamemRNA_7831
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1596
Alignment locationscaffold_21:442412..444007 +

Link to JBrowse

Properties
Property NameValue
TranscriptId600283
TrackFilteredModels2
ProteinId600197
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:442412..444007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600197gene_7831Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600197mRNA_7831-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7831CDS_7831Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7831 ID=mRNA_7831|Name=jgi.p|Nanoce1779_2|600197|organism=Nannochloropsis oceanica|type=mRNA|length=1596bp
GAGGCGGAGGAGGAGGGAGAGGGCGGAGTGGGTGGGGTGCCCGGAGTGGT
CGTGGAGGAGGAGGAGGATGAGGAAGACGAGGAGAGACAGAAAATGGGTA
TGTCGAAGAAAGCGGCGGTGGGTGTGATAGACCCGCGGCTGATTAAGACA
GGGGAGAGATTGACTGATTTTACCTCAGCAAAAGAGGAGTTTTTGGGGGG
TCCACCGTTGCCTGGTGTGTTGGCGGGGGGTCATCAGGTCTTCATCGTAG
GAGGGGCGCCGTTTGGAATAACGTCTGTTCTGCCGTTACAACCGTTTGAG
CGGGGGCTTGCCATGATGATGTACCACTCCAAGCCTGACGCTACCCCTCC
TCACCATCAACACCACCACCACCACCGTAGTGACCGTTTCGGGAAAACAA
TGCCGTCTCCTGCAGCCTTTCTTCCCCCCCTTCCCGAAGGTTCCACCGGG
AGCTACCTAGTCCTGGGAACATGCACGGTGCGGGCAAAGGGAGAAGACGT
TCCCTCCAAGGGGCGACTACTTATCTACCGCATTATGCTAGATCCTTACA
GTAGCCTCAGTAAAGGCGGTGGCCCTTCCTCTCCCCCGACTTTGACCTTG
GTGGATGAATTTACTCAACGTTCAGGTCCGCCCACCGCGATAGCCCAATT
GGGACAACACATTATTATTGCCGCTGGGCCTACCTTGTGGGTGTTTTCCT
TTTCCGCTGCAGGCGGTGGTGGAGGAGAGGGAGTGGTCGGGGGAGGGAGG
GAGAAGCTGAAGCCGATTGCGTTCTATGATGCCGACTTCTACGTGGTGTC
GTTGAAAGTTGTGAAAAATTTGATTGCCGTAACCGATGCTTACCATTCTG
TCCATTTATTGAAGTGGCACGAGGAGAACCCGGCGCACACCCTAGAGCTG
CTGGGGAAGGATTATTCGCCCATCGTTTCAGCGCAGCCGGGAGGGTCCCA
TTTTGTTGTGGACCCCCCGTCCTTAGGCGTGGTGGTGGGGGACAACAGGG
GTAACGTCCAGATGCTGCAATACGCCCAGGCGGATGTGGAGTCGAGGGGA
GGGAATCGCTTGGTCCGAAAGGTTGATTTCCATTTAAGCCATAAAATGAG
TTTTGTCCAGCATGCTAGGCCGGGCGCGGTGGCAAGGGCAGGGGCAATGA
GCCAGGGACTGAGATTGTTGATGTTTGGAACCGTGGAGGGGGGGGTGGGA
GCGATGGTGCCGTTGGAGGAGAAGGCATTTAGGCGGTTGTATGCGCTGCA
GGGGGTGATGGTGAATGCGTTGATGCACGTATGTGCATTTAATCCCAGAG
GTTTCCGATTAGTGGAGGCGAGAGGGTGGAGGGCGGGAAGGAAGAAAGGG
ATGTTGGATGGGGAGTTGTTGTGGCGCTTTCCAAGCCTCCCGAGGGGGCA
GCAAGAGGATTTAGCCAGCGCAATAGGGACCAGTCGGGAGATGATTCTTG
ACACCCTGCTGGAGGTAGACATGATGACGTGGACCTTGTAGGTGCCCTTC
CCTTTTCCCTCCTATCTTCCCAGCAGCAGCGGCAGCAGCAGCAGCAGCGG
CAGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
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protein sequence of jgi.p|Nanoce1779_2|600197

>mRNA_7831-protein ID=mRNA_7831-protein|Name=jgi.p|Nanoce1779_2|600197|organism=Nannochloropsis oceanica|type=polypeptide|length=466bp
MGMSKKAAVGVIDPRLIKTGERLTDFTSAKEEFLGGPPLPGVLAGGHQVF
IVGGAPFGITSVLPLQPFERGLAMMMYHSKPDATPPHHQHHHHHRSDRFG
KTMPSPAAFLPPLPEGSTGSYLVLGTCTVRAKGEDVPSKGRLLIYRIMLD
PYSSLSKGGGPSSPPTLTLVDEFTQRSGPPTAIAQLGQHIIIAAGPTLWV
FSFSAAGGGGGEGVVGGGREKLKPIAFYDADFYVVSLKVVKNLIAVTDAY
HSVHLLKWHEENPAHTLELLGKDYSPIVSAQPGGSHFVVDPPSLGVVVGD
NRGNVQMLQYAQADVESRGGNRLVRKVDFHLSHKMSFVQHARPGAVARAG
AMSQGLRLLMFGTVEGGVGAMVPLEEKAFRRLYALQGVMVNALMHVCAFN
PRGFRLVEARGWRAGRKKGMLDGELLWRFPSLPRGQQEDLASAIGTSREM
ILDTLLEVDMMTWTL*
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mRNA from alignment at scaffold_21:442412..444007+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7831 ID=mRNA_7831|Name=jgi.p|Nanoce1779_2|600197|organism=Nannochloropsis oceanica|type=mRNA|length=1596bp|location=Sequence derived from alignment at scaffold_21:442412..444007+ (Nannochloropsis oceanica)
GAGGCGGAGGAGGAGGGAGAGGGCGGAGTGGGTGGGGTGCCCGGAGTGGT
CGTGGAGGAGGAGGAGGATGAGGAAGACGAGGAGAGACAGAAAATGGGTA
TGTCGAAGAAAGCGGCGGTGGGTGTGATAGACCCGCGGCTGATTAAGACA
GGGGAGAGATTGACTGATTTTACCTCAGCAAAAGAGGAGTTTTTGGGGGG
TCCACCGTTGCCTGGTGTGTTGGCGGGGGGTCATCAGGTCTTCATCGTAG
GAGGGGCGCCGTTTGGAATAACGTCTGTTCTGCCGTTACAACCGTTTGAG
CGGGGGCTTGCCATGATGATGTACCACTCCAAGCCTGACGCTACCCCTCC
TCACCATCAACACCACCACCACCACCGTAGTGACCGTTTCGGGAAAACAA
TGCCGTCTCCTGCAGCCTTTCTTCCCCCCCTTCCCGAAGGTTCCACCGGG
AGCTACCTAGTCCTGGGAACATGCACGGTGCGGGCAAAGGGAGAAGACGT
TCCCTCCAAGGGGCGACTACTTATCTACCGCATTATGCTAGATCCTTACA
GTAGCCTCAGTAAAGGCGGTGGCCCTTCCTCTCCCCCGACTTTGACCTTG
GTGGATGAATTTACTCAACGTTCAGGTCCGCCCACCGCGATAGCCCAATT
GGGACAACACATTATTATTGCCGCTGGGCCTACCTTGTGGGTGTTTTCCT
TTTCCGCTGCAGGCGGTGGTGGAGGAGAGGGAGTGGTCGGGGGAGGGAGG
GAGAAGCTGAAGCCGATTGCGTTCTATGATGCCGACTTCTACGTGGTGTC
GTTGAAAGTTGTGAAAAATTTGATTGCCGTAACCGATGCTTACCATTCTG
TCCATTTATTGAAGTGGCACGAGGAGAACCCGGCGCACACCCTAGAGCTG
CTGGGGAAGGATTATTCGCCCATCGTTTCAGCGCAGCCGGGAGGGTCCCA
TTTTGTTGTGGACCCCCCGTCCTTAGGCGTGGTGGTGGGGGACAACAGGG
GTAACGTCCAGATGCTGCAATACGCCCAGGCGGATGTGGAGTCGAGGGGA
GGGAATCGCTTGGTCCGAAAGGTTGATTTCCATTTAAGCCATAAAATGAG
TTTTGTCCAGCATGCTAGGCCGGGCGCGGTGGCAAGGGCAGGGGCAATGA
GCCAGGGACTGAGATTGTTGATGTTTGGAACCGTGGAGGGGGGGGTGGGA
GCGATGGTGCCGTTGGAGGAGAAGGCATTTAGGCGGTTGTATGCGCTGCA
GGGGGTGATGGTGAATGCGTTGATGCACGTATGTGCATTTAATCCCAGAG
GTTTCCGATTAGTGGAGGCGAGAGGGTGGAGGGCGGGAAGGAAGAAAGGG
ATGTTGGATGGGGAGTTGTTGTGGCGCTTTCCAAGCCTCCCGAGGGGGCA
GCAAGAGGATTTAGCCAGCGCAATAGGGACCAGTCGGGAGATGATTCTTG
ACACCCTGCTGGAGGTAGACATGATGACGTGGACCTTGTAGGTGCCCTTC
CCTTTTCCCTCCTATCTTCCCAGCAGCAGCGGCAGCAGCAGCAGCAGCGG
CAGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
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Coding sequence (CDS) from alignment at scaffold_21:442412..444007+

>mRNA_7831 ID=mRNA_7831|Name=jgi.p|Nanoce1779_2|600197|organism=Nannochloropsis oceanica|type=CDS|length=1398bp|location=Sequence derived from alignment at scaffold_21:442412..444007+ (Nannochloropsis oceanica)
ATGGGTATGTCGAAGAAAGCGGCGGTGGGTGTGATAGACCCGCGGCTGAT
TAAGACAGGGGAGAGATTGACTGATTTTACCTCAGCAAAAGAGGAGTTTT
TGGGGGGTCCACCGTTGCCTGGTGTGTTGGCGGGGGGTCATCAGGTCTTC
ATCGTAGGAGGGGCGCCGTTTGGAATAACGTCTGTTCTGCCGTTACAACC
GTTTGAGCGGGGGCTTGCCATGATGATGTACCACTCCAAGCCTGACGCTA
CCCCTCCTCACCATCAACACCACCACCACCACCGTAGTGACCGTTTCGGG
AAAACAATGCCGTCTCCTGCAGCCTTTCTTCCCCCCCTTCCCGAAGGTTC
CACCGGGAGCTACCTAGTCCTGGGAACATGCACGGTGCGGGCAAAGGGAG
AAGACGTTCCCTCCAAGGGGCGACTACTTATCTACCGCATTATGCTAGAT
CCTTACAGTAGCCTCAGTAAAGGCGGTGGCCCTTCCTCTCCCCCGACTTT
GACCTTGGTGGATGAATTTACTCAACGTTCAGGTCCGCCCACCGCGATAG
CCCAATTGGGACAACACATTATTATTGCCGCTGGGCCTACCTTGTGGGTG
TTTTCCTTTTCCGCTGCAGGCGGTGGTGGAGGAGAGGGAGTGGTCGGGGG
AGGGAGGGAGAAGCTGAAGCCGATTGCGTTCTATGATGCCGACTTCTACG
TGGTGTCGTTGAAAGTTGTGAAAAATTTGATTGCCGTAACCGATGCTTAC
CATTCTGTCCATTTATTGAAGTGGCACGAGGAGAACCCGGCGCACACCCT
AGAGCTGCTGGGGAAGGATTATTCGCCCATCGTTTCAGCGCAGCCGGGAG
GGTCCCATTTTGTTGTGGACCCCCCGTCCTTAGGCGTGGTGGTGGGGGAC
AACAGGGGTAACGTCCAGATGCTGCAATACGCCCAGGCGGATGTGGAGTC
GAGGGGAGGGAATCGCTTGGTCCGAAAGGTTGATTTCCATTTAAGCCATA
AAATGAGTTTTGTCCAGCATGCTAGGCCGGGCGCGGTGGCAAGGGCAGGG
GCAATGAGCCAGGGACTGAGATTGTTGATGTTTGGAACCGTGGAGGGGGG
GGTGGGAGCGATGGTGCCGTTGGAGGAGAAGGCATTTAGGCGGTTGTATG
CGCTGCAGGGGGTGATGGTGAATGCGTTGATGCACGTATGTGCATTTAAT
CCCAGAGGTTTCCGATTAGTGGAGGCGAGAGGGTGGAGGGCGGGAAGGAA
GAAAGGGATGTTGGATGGGGAGTTGTTGTGGCGCTTTCCAAGCCTCCCGA
GGGGGCAGCAAGAGGATTTAGCCAGCGCAATAGGGACCAGTCGGGAGATG
ATTCTTGACACCCTGCTGGAGGTAGACATGATGACGTGGACCTTGTAG
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Synonyms
Publications