jgi.p|Nanoce1779_2|601755, mRNA_8365 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601755
Unique NamemRNA_8365
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length753
Alignment locationscaffold_24:62709..63461 +

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Properties
Property NameValue
TranscriptId601841
TrackFilteredModels2
ProteinId601755
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:62709..63461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601755gene_8365Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601755mRNA_8365-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8365CDS_8365Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8365 ID=mRNA_8365|Name=jgi.p|Nanoce1779_2|601755|organism=Nannochloropsis oceanica|type=mRNA|length=753bp
AGCTGTTCAAGAGGCAATAGTGTGTGACACCATCCGGTTGTCTTCCTCCT
CCTACTTCTCCTCCTCCTCCTTCTCCTTCTCTTCTTTCTTCGCTTCCTTC
CTTCATCCCTCCCCCCCCGCCTAGAGAGGTTGTAGTCTCCATTGCCTGCC
CCATGGCGCTCGTCTCACCACCACAGGTTATGCCATTGCTGCTGCTGTTA
CTGCCGTTGCTGTTGCTGCTGCTGGTTTTACTATTGCCGCTGCTGGTGAA
TGAGAACAAGGAGGAACGGAGAGGGAAAGGACGTCGGCCTTTGGATTTAG
ACCATCCTGCATTAGGAATCTCCTCAGGTGGGATTGAAGAGGAGGACAAA
GAGGCAGAGGGCGGCTTCGGCCGCATGTTTACTCAGCACGATGTTTTCTG
TATCGAGAAAGAAAGAAGGGAGAGAGAGAGGGAGCGAGGGAGGGAGAAAG
CGAGGGTAAATAGGTGGGCTTAAGGGGGGAAAGGGAAGGCATAAGCGCGG
CACACTCTCCTCAATCTCCTTCGTCTCGCCACGATGGGATTGATGATACA
TTTGTCGGGGTCTCCTCTTCTATTCTAGCACGGGGTCATACACACATCAC
ACGCCCTCATCAGCCAAGCCCGCCCTTTCGAAGAGGGAGCATCGTGCGCC
AGATAAACCCGGGCGGGCCACAACGTTGCTTTTTGGCGAGCGGGTGCGAC
AGACACCCGGAGGACGGACGCAAAGCGGGTTTCTGTTTCTGGATGCCTTG
TGG
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protein sequence of jgi.p|Nanoce1779_2|601755

>mRNA_8365-protein ID=mRNA_8365-protein|Name=jgi.p|Nanoce1779_2|601755|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MALVSPPQVMPLLLLLLPLLLLLLVLLLPLLVNENKEERRGKGRRPLDLD
HPALGISSGGIEEEDKEAEGGFGRMFTQHDVFCIEKERRERERERGREKA
RVNRWA*
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mRNA from alignment at scaffold_24:62709..63461+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8365 ID=mRNA_8365|Name=jgi.p|Nanoce1779_2|601755|organism=Nannochloropsis oceanica|type=mRNA|length=753bp|location=Sequence derived from alignment at scaffold_24:62709..63461+ (Nannochloropsis oceanica)
AGCTGTTCAAGAGGCAATAGTGTGTGACACCATCCGGTTGTCTTCCTCCT
CCTACTTCTCCTCCTCCTCCTTCTCCTTCTCTTCTTTCTTCGCTTCCTTC
CTTCATCCCTCCCCCCCCGCCTAGAGAGGTTGTAGTCTCCATTGCCTGCC
CCATGGCGCTCGTCTCACCACCACAGGTTATGCCATTGCTGCTGCTGTTA
CTGCCGTTGCTGTTGCTGCTGCTGGTTTTACTATTGCCGCTGCTGGTGAA
TGAGAACAAGGAGGAACGGAGAGGGAAAGGACGTCGGCCTTTGGATTTAG
ACCATCCTGCATTAGGAATCTCCTCAGGTGGGATTGAAGAGGAGGACAAA
GAGGCAGAGGGCGGCTTCGGCCGCATGTTTACTCAGCACGATGTTTTCTG
TATCGAGAAAGAAAGAAGGGAGAGAGAGAGGGAGCGAGGGAGGGAGAAAG
CGAGGGTAAATAGGTGGGCTTAAGGGGGGAAAGGGAAGGCATAAGCGCGG
CACACTCTCCTCAATCTCCTTCGTCTCGCCACGATGGGATTGATGATACA
TTTGTCGGGGTCTCCTCTTCTATTCTAGCACGGGGTCATACACACATCAC
ACGCCCTCATCAGCCAAGCCCGCCCTTTCGAAGAGGGAGCATCGTGCGCC
AGATAAACCCGGGCGGGCCACAACGTTGCTTTTTGGCGAGCGGGTGCGAC
AGACACCCGGAGGACGGACGCAAAGCGGGTTTCTGTTTCTGGATGCCTTG
TGG
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Coding sequence (CDS) from alignment at scaffold_24:62709..63461+

>mRNA_8365 ID=mRNA_8365|Name=jgi.p|Nanoce1779_2|601755|organism=Nannochloropsis oceanica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_24:62709..63461+ (Nannochloropsis oceanica)
ATGGCGCTCGTCTCACCACCACAGGTTATGCCATTGCTGCTGCTGTTACT
GCCGTTGCTGTTGCTGCTGCTGGTTTTACTATTGCCGCTGCTGGTGAATG
AGAACAAGGAGGAACGGAGAGGGAAAGGACGTCGGCCTTTGGATTTAGAC
CATCCTGCATTAGGAATCTCCTCAGGTGGGATTGAAGAGGAGGACAAAGA
GGCAGAGGGCGGCTTCGGCCGCATGTTTACTCAGCACGATGTTTTCTGTA
TCGAGAAAGAAAGAAGGGAGAGAGAGAGGGAGCGAGGGAGGGAGAAAGCG
AGGGTAAATAGGTGGGCTTAA
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Synonyms
Publications