jgi.p|Nanoce1779_2|203183, mRNA_8151 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|203183
Unique Name	mRNA_8151
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1653
Alignment location	scaffold_25:286318..287970 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	203269
Track	FilteredModels2
ProteinId	203183

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:286318..287970 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|203183	gene_8151	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|203183	mRNA_8151-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8151	CDS_8151	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:286318..287970+
coding sequence from alignment at scaffold_25:286318..287970+

mRNA sequence

>mRNA_8151 ID=mRNA_8151|Name=jgi.p|Nanoce1779_2|203183|organism=Nannochloropsis oceanica|type=mRNA|length=1653bp
GTGTGTTGAGTGTGCGGCCCTGGATACATTCACGGTCTGCTGCAATCGAG
ACTCCCATAGTCATCAAAAATCGCCTTTGGGCGAGGCGAGGCCCGAGGCG
TGCTCTTTTTCGAAGTTCGTGCCATCATCTGCACTTCGACTACCCGAACT
CTCAACACACCACAACAATTGCCCCTTTTTACCGTTTTCCTACAGCCATG
ATCACCACCATTCAGAAGCATGTTACCGGTCCCACTTCCCCACCGACCAT
TTTCGAGGAAGAAAAAGGGGTGGAAATCAGTACCAGCACCAGCAGCACCG
GCACTAGCACCAGCGACAGCCCCACAAACGCAAGCCTGCCCTTGTGCGTC
GAGGCCACTATGCCGCCGGGAGTAGCAATCCGTCCCAACGCCTTTGGCCT
CGGGCTATTTGCCACGCGATCATTTCAGGCGGGCGAAACGCTGTACATCA
CGTCTTGCATCTACGTGCCAGACATCGCTGCGGGCAAGGTTACTTTACGA
CTCACCGGCTCAGGAGAAGAGTACATCCTCGACATGCAAGAGCACTCGGT
CGTTCAATCTGACCTACCGGGCAAGCGGCAGCTGTATACGTACGACGCGT
TTATGAATCATGGATGCGACCCCAACACTTCCTCCTTCGTCACAGCCTGT
ACAAATAAGGAGCTCACCTACGGGATGAAAGCCCTGCGTGGCATTGCTAC
GGGCGAAGAACTTACCTGTGATTACAATCTGTTTGAATTCGACGCTGGGG
ACGCGGCGATTTCCCTTTGTCAATGCGGGGCGAGCGGGTGCCTAGGTGCG
ATAAAGGGCTTCCGGTATCTAAGATTTGAGCAGGCATTGCCGAGATTTGC
GATGGCGGAGCCCTATGTAATTGCTTCTTATCTGGCAGAACACCCGGAGG
TATACTTTTTAGACCTCCGGTCGCAGCATTCGAGGGGGTACGAGGCGGAG
GGGGGAGTGAGCAAAGGAGGGGAGGACGAGGTAGGGATAGAGGTCACGTT
TGACGAAGAGGGTGGATGCAAGGCCGTGGCGACCAAGGCGTGGGCGTCAG
GTGAAGTACTGTTGAGGGACATCCAACTACCTCAGGCTCCACAGCAGCAC
CTGCAGCAGGAGGGGGAGCAGCAGTGCCTAGAGGTGCGGAAGTCCCAGGC
ATTTGTTGTGGTGCTGGCGCCGGGCGTCGCGCAGGGGTCGGCGTCGGTTG
ACTTGACGGGCTTTGGGATAGGAGGGAAAGATAGGGAGGAGAGGAAGAAG
GGAGGGGAGGAGATGAAGGAGACCTGGCCAATACGCCTCCTATTTGGTGG
AGGAGCGAGGAGGAAGGGCGAGGAGGGCGGTGCGAATATCCGAGTCGAGA
GAGAGGGAGGAAGGGAAGGAGAAAGGGAGACGTACAGGGTGGTTGTGACT
GCGGCGATCGCGATGGGGCAGGCAGTGGTGGTCGGAATGGAGGAAAAATG
AGGGGAGTCCGTGCGAGAAGCAGGAGAAAGCGCAAAAATAAAATGTGTAT
TTGATATCAGTAGAGTAAACTAGCCGGGGGGGGAAAGAGAGTTCCGTTAC
GAATTGGAGATTTGAAGAAAACGGATGACGGGCGTCAACTTGATTTGTTG
ACGGAAAGTTAGACTAAGAATTTTTCGGTTGAGCATGCATTTTATGAAAC
CCG

protein sequence of jgi.p|Nanoce1779_2|203183

>mRNA_8151-protein ID=mRNA_8151-protein|Name=jgi.p|Nanoce1779_2|203183|organism=Nannochloropsis oceanica|type=polypeptide|length=418bp
MITTIQKHVTGPTSPPTIFEEEKGVEISTSTSSTGTSTSDSPTNASLPLC
VEATMPPGVAIRPNAFGLGLFATRSFQAGETLYITSCIYVPDIAAGKVTL
RLTGSGEEYILDMQEHSVVQSDLPGKRQLYTYDAFMNHGCDPNTSSFVTA
CTNKELTYGMKALRGIATGEELTCDYNLFEFDAGDAAISLCQCGASGCLG
AIKGFRYLRFEQALPRFAMAEPYVIASYLAEHPEVYFLDLRSQHSRGYEA
EGGVSKGGEDEVGIEVTFDEEGGCKAVATKAWASGEVLLRDIQLPQAPQQ
HLQQEGEQQCLEVRKSQAFVVVLAPGVAQGSASVDLTGFGIGGKDREERK
KGGEEMKETWPIRLLFGGGARRKGEEGGANIRVEREGGREGERETYRVVV
TAAIAMGQAVVVGMEEK*

mRNA from alignment at scaffold_25:286318..287970+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8151 ID=mRNA_8151|Name=jgi.p|Nanoce1779_2|203183|organism=Nannochloropsis oceanica|type=mRNA|length=1653bp|location=Sequence derived from alignment at scaffold_25:286318..287970+ (Nannochloropsis oceanica)
GTGTGTTGAGTGTGCGGCCCTGGATACATTCACGGTCTGCTGCAATCGAG
ACTCCCATAGTCATCAAAAATCGCCTTTGGGCGAGGCGAGGCCCGAGGCG
TGCTCTTTTTCGAAGTTCGTGCCATCATCTGCACTTCGACTACCCGAACT
CTCAACACACCACAACAATTGCCCCTTTTTACCGTTTTCCTACAGCCATG
ATCACCACCATTCAGAAGCATGTTACCGGTCCCACTTCCCCACCGACCAT
TTTCGAGGAAGAAAAAGGGGTGGAAATCAGTACCAGCACCAGCAGCACCG
GCACTAGCACCAGCGACAGCCCCACAAACGCAAGCCTGCCCTTGTGCGTC
GAGGCCACTATGCCGCCGGGAGTAGCAATCCGTCCCAACGCCTTTGGCCT
CGGGCTATTTGCCACGCGATCATTTCAGGCGGGCGAAACGCTGTACATCA
CGTCTTGCATCTACGTGCCAGACATCGCTGCGGGCAAGGTTACTTTACGA
CTCACCGGCTCAGGAGAAGAGTACATCCTCGACATGCAAGAGCACTCGGT
CGTTCAATCTGACCTACCGGGCAAGCGGCAGCTGTATACGTACGACGCGT
TTATGAATCATGGATGCGACCCCAACACTTCCTCCTTCGTCACAGCCTGT
ACAAATAAGGAGCTCACCTACGGGATGAAAGCCCTGCGTGGCATTGCTAC
GGGCGAAGAACTTACCTGTGATTACAATCTGTTTGAATTCGACGCTGGGG
ACGCGGCGATTTCCCTTTGTCAATGCGGGGCGAGCGGGTGCCTAGGTGCG
ATAAAGGGCTTCCGGTATCTAAGATTTGAGCAGGCATTGCCGAGATTTGC
GATGGCGGAGCCCTATGTAATTGCTTCTTATCTGGCAGAACACCCGGAGG
TATACTTTTTAGACCTCCGGTCGCAGCATTCGAGGGGGTACGAGGCGGAG
GGGGGAGTGAGCAAAGGAGGGGAGGACGAGGTAGGGATAGAGGTCACGTT
TGACGAAGAGGGTGGATGCAAGGCCGTGGCGACCAAGGCGTGGGCGTCAG
GTGAAGTACTGTTGAGGGACATCCAACTACCTCAGGCTCCACAGCAGCAC
CTGCAGCAGGAGGGGGAGCAGCAGTGCCTAGAGGTGCGGAAGTCCCAGGC
ATTTGTTGTGGTGCTGGCGCCGGGCGTCGCGCAGGGGTCGGCGTCGGTTG
ACTTGACGGGCTTTGGGATAGGAGGGAAAGATAGGGAGGAGAGGAAGAAG
GGAGGGGAGGAGATGAAGGAGACCTGGCCAATACGCCTCCTATTTGGTGG
AGGAGCGAGGAGGAAGGGCGAGGAGGGCGGTGCGAATATCCGAGTCGAGA
GAGAGGGAGGAAGGGAAGGAGAAAGGGAGACGTACAGGGTGGTTGTGACT
GCGGCGATCGCGATGGGGCAGGCAGTGGTGGTCGGAATGGAGGAAAAATG
AGGGGAGTCCGTGCGAGAAGCAGGAGAAAGCGCAAAAATAAAATGTGTAT
TTGATATCAGTAGAGTAAACTAGCCGGGGGGGGAAAGAGAGTTCCGTTAC
GAATTGGAGATTTGAAGAAAACGGATGACGGGCGTCAACTTGATTTGTTG
ACGGAAAGTTAGACTAAGAATTTTTCGGTTGAGCATGCATTTTATGAAAC
CCG

Coding sequence (CDS) from alignment at scaffold_25:286318..287970+

>mRNA_8151 ID=mRNA_8151|Name=jgi.p|Nanoce1779_2|203183|organism=Nannochloropsis oceanica|type=CDS|length=1254bp|location=Sequence derived from alignment at scaffold_25:286318..287970+ (Nannochloropsis oceanica)
ATGATCACCACCATTCAGAAGCATGTTACCGGTCCCACTTCCCCACCGAC
CATTTTCGAGGAAGAAAAAGGGGTGGAAATCAGTACCAGCACCAGCAGCA
CCGGCACTAGCACCAGCGACAGCCCCACAAACGCAAGCCTGCCCTTGTGC
GTCGAGGCCACTATGCCGCCGGGAGTAGCAATCCGTCCCAACGCCTTTGG
CCTCGGGCTATTTGCCACGCGATCATTTCAGGCGGGCGAAACGCTGTACA
TCACGTCTTGCATCTACGTGCCAGACATCGCTGCGGGCAAGGTTACTTTA
CGACTCACCGGCTCAGGAGAAGAGTACATCCTCGACATGCAAGAGCACTC
GGTCGTTCAATCTGACCTACCGGGCAAGCGGCAGCTGTATACGTACGACG
CGTTTATGAATCATGGATGCGACCCCAACACTTCCTCCTTCGTCACAGCC
TGTACAAATAAGGAGCTCACCTACGGGATGAAAGCCCTGCGTGGCATTGC
TACGGGCGAAGAACTTACCTGTGATTACAATCTGTTTGAATTCGACGCTG
GGGACGCGGCGATTTCCCTTTGTCAATGCGGGGCGAGCGGGTGCCTAGGT
GCGATAAAGGGCTTCCGGTATCTAAGATTTGAGCAGGCATTGCCGAGATT
TGCGATGGCGGAGCCCTATGTAATTGCTTCTTATCTGGCAGAACACCCGG
AGGTATACTTTTTAGACCTCCGGTCGCAGCATTCGAGGGGGTACGAGGCG
GAGGGGGGAGTGAGCAAAGGAGGGGAGGACGAGGTAGGGATAGAGGTCAC
GTTTGACGAAGAGGGTGGATGCAAGGCCGTGGCGACCAAGGCGTGGGCGT
CAGGTGAAGTACTGTTGAGGGACATCCAACTACCTCAGGCTCCACAGCAG
CACCTGCAGCAGGAGGGGGAGCAGCAGTGCCTAGAGGTGCGGAAGTCCCA
GGCATTTGTTGTGGTGCTGGCGCCGGGCGTCGCGCAGGGGTCGGCGTCGG
TTGACTTGACGGGCTTTGGGATAGGAGGGAAAGATAGGGAGGAGAGGAAG
AAGGGAGGGGAGGAGATGAAGGAGACCTGGCCAATACGCCTCCTATTTGG
TGGAGGAGCGAGGAGGAAGGGCGAGGAGGGCGGTGCGAATATCCGAGTCG
AGAGAGAGGGAGGAAGGGAAGGAGAAAGGGAGACGTACAGGGTGGTTGTG
ACTGCGGCGATCGCGATGGGGCAGGCAGTGGTGGTCGGAATGGAGGAAAA
ATGA

Synonyms

Publications