jgi.p|Nanoce1779_2|642104, mRNA_8755 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|642104
Unique Name	mRNA_8755
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	858
Alignment location	scaffold_28:51928..53018 +

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Properties


Property Name	Value
TranscriptId	642190
Track	FilteredModels2
ProteinId	642104

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_28	supercontig	scaffold_28:51928..53018 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|642104	gene_8755	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|642104	mRNA_8755-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8755	CDS_8755	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_28:51928..53018+
coding sequence from alignment at scaffold_28:51928..53018+

mRNA sequence

>mRNA_8755 ID=mRNA_8755|Name=jgi.p|Nanoce1779_2|642104|organism=Nannochloropsis oceanica|type=mRNA|length=858bp
ATGCCGTCTGGAATGGGCTTCTTGCTCTGCAAGGGCTGGCATCCAGGCAC
CCAACAAAACATGCGGAAAGTGTGGATCGCCGAGCAAGAAACCGCCGCGC
GGGAACAACGGGAGAAAGAAGCCGCGGAAGCCTTGGGAAAAGAGTTGGAA
GCGCAGCATTTTGCCGAGATGGCTAAGTCGAAAATGTGTAGCATGACGAT
GCTTGCCACGGACATCGAGAAGAACAAGACTGCCAAAGGATCGATTGCCT
TCCTCTATGCCAAGCCGCCGGGCATGCTTTTGCAGGGCCAGGATGGGGTG
GGTGGGGAGGAAGGGGGGCAGGGAGGTTTGGAGGACGGGGCTGATGAGGC
GGCACGGGCTTTTTTTAAGCAGAATGAAGAGGCGGCCAAGGCGAGGAAAG
TAAGAGAGCATAAGGAGAGTGCTGCGTTTAGCATGCATGGGAAGTTAAGC
GCACTGGAGCAGATGACGGGGACACGTCGAAGGAAAGAGCTCACCATGGA
CGAGCAAGCCGAGCGTTTCCCCATCCTCCGAAACGCCCCCGTTGAGGGCG
CCTATGCGCAAAACGTTAAATTGACTTTCAATCCCGTGGGCTTCACCATC
CGCAACTGCCAGTGTCTTAAATGTGGAGCGTACGGGCATACCAGTGGCGA
TAGGGAGTGTCCGCTCTGGGGGGAGATAACGAGCTTGAACGCGGCGAGGT
TGAGGAGGGAGGATCCCCTGACATACATGGAAAAGGACGAGGAGGAGGGC
GGGCCGGAGGGAGGGAAGGAGGGAGGAAAGAAAGAGAAGGTGGTATTACG
CTTGGCGGCATTGCCACGGGAGATGGCGTTTGCGAGGGGGGAGGGGGGGG
GGAGGTAG

protein sequence of jgi.p|Nanoce1779_2|642104

>mRNA_8755-protein ID=mRNA_8755-protein|Name=jgi.p|Nanoce1779_2|642104|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MPSGMGFLLCKGWHPGTQQNMRKVWIAEQETAAREQREKEAAEALGKELE
AQHFAEMAKSKMCSMTMLATDIEKNKTAKGSIAFLYAKPPGMLLQGQDGV
GGEEGGQGGLEDGADEAARAFFKQNEEAAKARKVREHKESAAFSMHGKLS
ALEQMTGTRRRKELTMDEQAERFPILRNAPVEGAYAQNVKLTFNPVGFTI
RNCQCLKCGAYGHTSGDRECPLWGEITSLNAARLRREDPLTYMEKDEEEG
GPEGGKEGGKKEKVVLRLAALPREMAFARGEGGGR*

mRNA from alignment at scaffold_28:51928..53018+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8755 ID=mRNA_8755|Name=jgi.p|Nanoce1779_2|642104|organism=Nannochloropsis oceanica|type=mRNA|length=1091bp|location=Sequence derived from alignment at scaffold_28:51928..53018+ (Nannochloropsis oceanica)
ATGCCGTCTGGAATGGGCTTCTTGCTCTGCAAGGTACTTATGCGGCTTCG
TCTCCTGTCGCGCATTTGTGGTACCCGCATGAATGGCGCTATCTCCCCGT
TCACTTTCATCCATCCTGTGACCGATCTGACTCTCCTTCCCCCCCAAACT
CTTTCCCATCCCATCCCTCTTCCTTCCTAGGGCTGGCATCCAGGCACCCA
ACAAAACATGCGGAAAGTGTGGATCGCCGAGCAAGAAACCGCCGCGCGGG
AACAACGGGAGAAAGAAGCCGCGGAAGCCTTGGGAAAAGAGTTGGAAGCG
CAGCATTTTGCCGAGATGGCTAAGTCGAAAATGTGTAGCATGACGATGCT
TGCCACGGACATCGAGAAGAACAAGACTGCCAAAGGATCGATTGCCTTCC
TCTATGCCAAGCCGCCGGGCATGCTTTTGCAGGGCCAGGATGGGGTGGGT
GGGGAGGAAGGGGGGCAGGGAGGTTTGGAGGACGGGGCTGATGAGGCGGC
ACGGGCTTTTTTTAAGCAGAATGAAGAGGCGGCCAAGGCGAGGAAAGTAA
GAGAGCATAAGGAGAGTGCTGCGTTTAGCATGCATGGGAAGTTAAGCGCA
CTGGAGCAGATGACGGGGACACGTCGAAGGAAAGAGGTATGTTCAGGCCT
TCCTTCCCTTCCTCCCTCCCTCACCTAGCTCACAATATTTCTGCGTAAAT
CCTCCCTCCCTCCCTCCTGCAGCTCACCATGGACGAGCAAGCCGAGCGTT
TCCCCATCCTCCGAAACGCCCCCGTTGAGGGCGCCTATGCGCAAAACGTT
AAATTGACTTTCAATCCCGTGGGCTTCACCATCCGCAACTGCCAGTGTCT
TAAATGTGGAGCGTACGGGCATACCAGTGGCGATAGGGAGTGTCCGCTCT
GGGGGGAGATAACGAGCTTGAACGCGGCGAGGTTGAGGAGGGAGGATCCC
CTGACATACATGGAAAAGGACGAGGAGGAGGGCGGGCCGGAGGGAGGGAA
GGAGGGAGGAAAGAAAGAGAAGGTGGTATTACGCTTGGCGGCATTGCCAC
GGGAGATGGCGTTTGCGAGGGGGGAGGGGGGGGGGAGGTAG

Coding sequence (CDS) from alignment at scaffold_28:51928..53018+

>mRNA_8755 ID=mRNA_8755|Name=jgi.p|Nanoce1779_2|642104|organism=Nannochloropsis oceanica|type=CDS|length=2574bp|location=Sequence derived from alignment at scaffold_28:51928..53018+ (Nannochloropsis oceanica)
ATGCCGTCTGGAATGGGCTTCTTGCTCTGCAAGGGCTGGCATCCAGGCAC
CCAACAAAACATGCGGAAAGTGTGGATCGCCGAGCAAGAAACCGCCGCGC
GGGAACAACGGGAGAAAGAAGCCGCGGAAGCCTTGGGAAAAGAGTTGGAA
GCGCAGCATTTTGCCGAGATGGCTAAGTCGAAAATGTGTAGCATGACGAT
GCTTGCCACGGACATCGAGAAGAACAAGACTGCCAAAGGATCGATTGCCT
TCCTCTATGCCAAGCCGCCGGGCATGCTTTTGCAGGGCCAGGATGGGGTG
GGTGGGGAGGAAGGGGGGCAGGGAGGTTTGGAGGACGGGGCTGATGAGGC
GGCACGGGCTTTTTTTAAGCAGAATGAAGAGGCGGCCAAGGCGAGGAAAG
TAAGAGAGCATAAGGAGAGTGCTGCGTTTAGCATGCATGGGAAGTTAAGC
GCACTGGAGCAGATGACGGGGACACGTCGAAGGAAAGAGCTCACCATGGA
CGAGCAAGCCGAGCGTTTCCCCATCCTCCGAAACGCCCCCGTTGAGGGCG
CCTATGCGCAAAACGTTAAATTGACTTTCAATCCCGTGGGCTTCACCATC
CGCAACTGCCAGTGTCTTAAATGTGGAGCGTACGGGCATACCAGTGGCGA
TAGGGAGTGTCCGCTCTGGGGGGAGATAACGAGCTTGAACGCGGCGAGGT
TGAGGAGGGAGGATCCCCTGACATACATGGAAAAGGACGAGGAGGAGGGC
GGGCCGGAGGGAGGGAAGGAGGGAGGAAAGAAAGAGAAGGTGGTATTACG
CTTGGCGGCATTGCCACGGGAGATGGCGTTTGCGAGGGGGGAGGGGGGGG
GGAGGTAGATGCCGTCTGGAATGGGCTTCTTGCTCTGCAAGGGCTGGCAT
CCAGGCACCCAACAAAACATGCGGAAAGTGTGGATCGCCGAGCAAGAAAC
CGCCGCGCGGGAACAACGGGAGAAAGAAGCCGCGGAAGCCTTGGGAAAAG
AGTTGGAAGCGCAGCATTTTGCCGAGATGGCTAAGTCGAAAATGTGTAGC
ATGACGATGCTTGCCACGGACATCGAGAAGAACAAGACTGCCAAAGGATC
GATTGCCTTCCTCTATGCCAAGCCGCCGGGCATGCTTTTGCAGGGCCAGG
ATGGGGTGGGTGGGGAGGAAGGGGGGCAGGGAGGTTTGGAGGACGGGGCT
GATGAGGCGGCACGGGCTTTTTTTAAGCAGAATGAAGAGGCGGCCAAGGC
GAGGAAAGTAAGAGAGCATAAGGAGAGTGCTGCGTTTAGCATGCATGGGA
AGTTAAGCGCACTGGAGCAGATGACGGGGACACGTCGAAGGAAAGAGCTC
ACCATGGACGAGCAAGCCGAGCGTTTCCCCATCCTCCGAAACGCCCCCGT
TGAGGGCGCCTATGCGCAAAACGTTAAATTGACTTTCAATCCCGTGGGCT
TCACCATCCGCAACTGCCAGTGTCTTAAATGTGGAGCGTACGGGCATACC
AGTGGCGATAGGGAGTGTCCGCTCTGGGGGGAGATAACGAGCTTGAACGC
GGCGAGGTTGAGGAGGGAGGATCCCCTGACATACATGGAAAAGGACGAGG
AGGAGGGCGGGCCGGAGGGAGGGAAGGAGGGAGGAAAGAAAGAGAAGGTG
GTATTACGCTTGGCGGCATTGCCACGGGAGATGGCGTTTGCGAGGGGGGA
GGGGGGGGGGAGGTAGATGCCGTCTGGAATGGGCTTCTTGCTCTGCAAGG
GCTGGCATCCAGGCACCCAACAAAACATGCGGAAAGTGTGGATCGCCGAG
CAAGAAACCGCCGCGCGGGAACAACGGGAGAAAGAAGCCGCGGAAGCCTT
GGGAAAAGAGTTGGAAGCGCAGCATTTTGCCGAGATGGCTAAGTCGAAAA
TGTGTAGCATGACGATGCTTGCCACGGACATCGAGAAGAACAAGACTGCC
AAAGGATCGATTGCCTTCCTCTATGCCAAGCCGCCGGGCATGCTTTTGCA
GGGCCAGGATGGGGTGGGTGGGGAGGAAGGGGGGCAGGGAGGTTTGGAGG
ACGGGGCTGATGAGGCGGCACGGGCTTTTTTTAAGCAGAATGAAGAGGCG
GCCAAGGCGAGGAAAGTAAGAGAGCATAAGGAGAGTGCTGCGTTTAGCAT
GCATGGGAAGTTAAGCGCACTGGAGCAGATGACGGGGACACGTCGAAGGA
AAGAGCTCACCATGGACGAGCAAGCCGAGCGTTTCCCCATCCTCCGAAAC
GCCCCCGTTGAGGGCGCCTATGCGCAAAACGTTAAATTGACTTTCAATCC
CGTGGGCTTCACCATCCGCAACTGCCAGTGTCTTAAATGTGGAGCGTACG
GGCATACCAGTGGCGATAGGGAGTGTCCGCTCTGGGGGGAGATAACGAGC
TTGAACGCGGCGAGGTTGAGGAGGGAGGATCCCCTGACATACATGGAAAA
GGACGAGGAGGAGGGCGGGCCGGAGGGAGGGAAGGAGGGAGGAAAGAAAG
AGAAGGTGGTATTACGCTTGGCGGCATTGCCACGGGAGATGGCGTTTGCG
AGGGGGGAGGGGGGGGGGAGGTAG

Synonyms

Publications