jgi.p|Nanoce1779_2|603901, mRNA_8762 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603901
Unique NamemRNA_8762
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1882
Alignment locationscaffold_28:61919..64328 -

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Properties
Property NameValue
TranscriptId603987
TrackFilteredModels2
ProteinId603901
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:61919..64328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603901gene_8762Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603901mRNA_8762-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8762CDS_8762Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8762 ID=mRNA_8762|Name=jgi.p|Nanoce1779_2|603901|organism=Nannochloropsis oceanica|type=mRNA|length=1882bp
GCATCCCCAGAAGTAAGGAGCTGGAAAGCCATGAGTGACTACGATTACAA
CGAGGAGACGACAAGTCAGAACGGCGGCGTGGGCGATGCTTCTTACAATG
TAAGTTTGGGGGCATGTCTATTTATCTAGATCGGTAGAAGAACGAGGACG
TGCCAAGCCTGCATAGAGAAATAGTCAGGAGGCGCAACTGTGGGCATGGC
ATGGGGTGTCGTCAACGGTCCTTCTTTCTGCTCGTTGTAAACCATCGCTC
ATCTTCAGTGTCCCAACTCCCATCCCGACCAATCAAAAACACATGTGCCG
ATCTCCCCTTCCTCGCCTACTCTATGCGTTACCTGCAGAGCACCGGCTCA
GCCAATCTTGATGCTGCTCCTGCATCGTACGCCGAGCTGGATGAGATGCC
TACGGAGCTCCCTTCGACCTCGGCCTTGGAGTGAGTGCGGGAAAGAGAGG
GAGGGAGGGAGGAAGGGTGGGAAGGAGAGACGGCTGGTTGTTTACTTTAT
GTGCGGAGTGAATGAGTGCAGGAGCGGTCAAGAGAAGCCTTTGAGTATTT
AAATCAATCAACCATTCTCTACTTTTGAAACTTCTAGATGTCTTGCCCCC
TACTTCTACTTCTACCCAAGTCTACTTCCCTCCCTCCCTCTTCCTCCCTC
CCCACTCCCTTCCCTATTGCCCCACGAATTCCCAAGGGGGAATGAGAAGG
CAAGCTGGAGGCGCAGCGAGGAAGAAACAATGAGGACCAACCGACCGCCA
TCACCAACAAAACACACACTACTCACGTTACTCCTTTCCTCGTTCCTTCC
CTCCCTCGTTCCTTCCCCTCCCTCCCTCCTTCCCCTCCCGTCAGTGCTTT
CCTCGAGGAATGGGAACGAAAGTTGGACGCCAAACGAGGTGTGGAGAACG
AGAAGAGGTCCACGGTCATAGAGAAAGCACGGGCAGAGCTGGCGAAATTC
GCGGAGGAGCGAGAGGAGATGAGAGAGAAGAAGCAGAGTGCGAACAGGAA
GGAGGAGCAGGTGAAGCTAGAGAAGCTGGAGGCCGACTTGGAGGCGGAGA
ATCCCTGGGAGCGTGTGATAAGCCTCATTGATATGCAAACTGACGTGGGG
GGGCCAGAGTCGCCCTCCTGCGACCTGCAACGGCTGAAGCAGATGCTGAT
CCAACTCAAGGCGGAACCGTTGGGGGAAAAGAAATAGGAAGAGAAGGAAG
GAGGGAAAGAGGGAGGGGTGGTGCATGTGGGTGTTGTTGATGTTGATTTG
AGCGAGGCCGGACTTGAAATAAATTTGCGAGAGGAAGGGTGGGCAAGGGG
GACGAAGGAAGGGAGGGAGGGGACTGCAGTGGTAAGACGAATGCAGGGAT
TTGACTGAGAAAGCAGGAACGTGAAACGGGGATGGGGGGAGGGGGTAAGG
TGGGTGCGCGTGAGAAAGAGGGAGAAAATGAGAGGAAAAAGCACGAATAA
AAAAAGGAAGATCCCCTCTTGACAAACCGTTATCGTTACATATGTGTGAA
AAAGTGCGTATATAATAAGTGAGTGTGTGTGTGTTATGTGTTTGTGTGCT
TGATTGTCTACGCTCGTGGACAACGATGTCATTTCCCTTTCCCTATTTCA
TCTTCATTCTTTTAATGGCAGTGGATCCGGCGGCATGGAGCACACTCCCT
CCTTTCTTTCACCACCACTCAAAAACTATGAATGAAGCTGACCACCGCCA
GAGGTGTCCTCTGTTAACCCTAACCCTAACAGAGGTGTCCACCCTCCCTC
TTCCGTCTTCCCCTCTACCACGCCGCCATCCACAGACAAGACAAAGAGGG
GAAAGAGGGACAGAGGAACCCGACCATGGACCCCTCCCTCCCTTGCTCCC
TTGCTCCCTCCCTCCATAGCCGCTACTGTTCT
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protein sequence of jgi.p|Nanoce1779_2|603901

>mRNA_8762-protein ID=mRNA_8762-protein|Name=jgi.p|Nanoce1779_2|603901|organism=Nannochloropsis oceanica|type=polypeptide|length=73bp
MREKKQSANRKEEQVKLEKLEADLEAENPWERVISLIDMQTDVGGPESPS
CDLQRLKQMLIQLKAEPLGEKK*
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mRNA from alignment at scaffold_28:61919..64328-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8762 ID=mRNA_8762|Name=jgi.p|Nanoce1779_2|603901|organism=Nannochloropsis oceanica|type=mRNA|length=2410bp|location=Sequence derived from alignment at scaffold_28:61919..64328- (Nannochloropsis oceanica)
GCATCCCCAGAAGTAAGGAGCTGGAAAGCCATGAGTGACTACGATTACAA
CGAGGAGACGACAAGTCAGAACGGCGGCGTGGGCGATGCTTCTTACAATG
TAAGTTTGGGGGCATGTCTATTTATCTAGATCGGTAGAAGAACGAGGACG
TGCCAAGCCTGCATAGAGAAATAGTCAGGAGGCGCAACTGTGGGCATGGC
ATGGGGTGTCGTCAACGGTCCTTCTTTCTGCTCGTTGTAAACCATCGCTC
ATCTTCAGTGTCCCAACTCCCATCCCGACCAATCAAAAACACATGTGCCG
ATCTCCCCTTCCTCGCCTACTCTATGCGTTACCTGCAGAGCACCGGCTCA
GGTATGAACCAATTACTCGCCCCTCCTAGTCCTGCATTCTTTCGATTCCC
CTCCTTCACTGCCCTTGATGCTTCATCCGCCCACCCCCTATTGCACTCAT
CATTCTCTCTCATGCATAAACGCGCGCACATACGCTTACCACAGCCAATC
TTGATGCTGCTCCTGCATCGTACGCCGAGCTGGATGAGATGCCTACGGAG
CTCCCTTCGACCTCGGCCTTGGAGTGAGTGCGGGAAAGAGAGGGAGGGAG
GGAGGAAGGGTGGGAAGGAGAGACGGCTGGTTGTTTACTTTATGTGCGGA
GTGAATGAGTGCAGGAGCGGTCAAGAGAAGCCTTTGAGTATTTAAATCAA
TCAACCATTCTCTACTTTTGAAACTTCTAGATGTCTTGCCCCCTACTTCT
ACTTCTACCCAAGTCTACTTCCCTCCCTCCCTCTTCCTCCCTCCCCACTC
CCTTCCCTATTGCCCCACGAATTCCCAAGGGGGAATGAGAAGGCAAGCTG
GAGGCGCAGCGAGGAAGAAACAATGAGGACCAACCGACCGCCATCACCAA
CAAAACACACACTACTCACGTTACTCCTTTCCTCGTTCCTTCCCTCCCTC
GTTCCTTCCCCTCCCTCCCTCCTTCCCCTCCCGTCAGTGCTTTCCTCGAG
GAATGGGAACGAAAGTTGGACGCCAAACGAGGTGTGGAGAACGAGAAGAG
GTCCACGGTCATAGAGAAAGCACGGGCAGAGCTGGCGAAATTCGCGGAGG
AGCGAGAGGAGATGAGAGAGAAGAAGCAGAGTGCGAACAGGAAGGAGGAG
CAGGTAACCAGGGCGGGAGGAAGGGAGGGAGGGACGGAGGGAGGGGGTGG
GGAGGGCGGAGGACGGAATGGCGTGAGATGATGGATGAGAAGAGGCTGAA
GGCGAAGAGTGAAGGAGACAGAGGCGCGATTTTGGTGGTGGCGGCGTGTG
AGCCACAGGCCTGACGAGACCACTTGCACATTCCTCCCTCCCTCCCTCTT
TTTCGGGCAAGCTCGAGTAGTAATAAACTGAGTTGGGGACTGAAGACCTC
TGATAGCATGTGATGTAATTGACCTCATGGATATGATGTAATTGACCTCA
TAGACGTGTCACTATCGGCCGCCTCGGTTCCATGGTGCATGTAACTAATC
TTCCCCTCCCTTACTCTCTCCCTCCCCCTTTCCTTCAGGTGAAGCTAGAG
AAGCTGGAGGCCGACTTGGAGGCGGAGAATCCCTGGGAGCGTGTGATAAG
CCTCATTGATATGCAAACTGACGTGGGGGGGCCAGAGTCGCCCTCCTGCG
ACCTGCAACGGCTGAAGCAGATGCTGATCCAACTCAAGGCGGAACCGTTG
GGGGAAAAGAAATAGGAAGAGAAGGAAGGAGGGAAAGAGGGAGGGGTGGT
GCATGTGGGTGTTGTTGATGTTGATTTGAGCGAGGCCGGACTTGAAATAA
ATTTGCGAGAGGAAGGGTGGGCAAGGGGGACGAAGGAAGGGAGGGAGGGG
ACTGCAGTGGTAAGACGAATGCAGGGATTTGACTGAGAAAGCAGGAACGT
GAAACGGGGATGGGGGGAGGGGGTAAGGTGGGTGCGCGTGAGAAAGAGGG
AGAAAATGAGAGGAAAAAGCACGAATAAAAAAAGGAAGATCCCCTCTTGA
CAAACCGTTATCGTTACATATGTGTGAAAAAGTGCGTATATAATAAGTGA
GTGTGTGTGTGTTATGTGTTTGTGTGCTTGATTGTCTACGCTCGTGGACA
ACGATGTCATTTCCCTTTCCCTATTTCATCTTCATTCTTTTAATGGCAGT
GGATCCGGCGGCATGGAGCACACTCCCTCCTTTCTTTCACCACCACTCAA
AAACTATGAATGAAGCTGACCACCGCCAGAGGTGTCCTCTGTTAACCCTA
ACCCTAACAGAGGTGTCCACCCTCCCTCTTCCGTCTTCCCCTCTACCACG
CCGCCATCCACAGACAAGACAAAGAGGGGAAAGAGGGACAGAGGAACCCG
ACCATGGACCCCTCCCTCCCTTGCTCCCTTGCTCCCTCCCTCCATAGCCG
CTACTGTTCT
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Coding sequence (CDS) from alignment at scaffold_28:61919..64328-

>mRNA_8762 ID=mRNA_8762|Name=jgi.p|Nanoce1779_2|603901|organism=Nannochloropsis oceanica|type=CDS|length=438bp|location=Sequence derived from alignment at scaffold_28:61919..64328- (Nannochloropsis oceanica)
GTGAAGCTAGAGAAGCTGGAGGCCGACTTGGAGGCGGAGAATCCCTGGGA
GCGTGTGATAAGCCTCATTGATATGCAAACTGACGTGGGGGGGCCAGAGT
CGCCCTCCTGCGACCTGCAACGGCTGAAGCAGATGCTGATCCAACTCAAG
GCGGAACCGTTGGGGGAAAAGAAATAGATGAGAGAGAAGAAGCAGAGTGC
GAACAGGAAGGAGGAGCAGGTGAAGCTAGAGAAGCTGGAGGCCGACTTGG
AGGCGGAGAATCCCTGGGAGCGTGTGATAAGCCTCATTGATATGCAAACT
GACGTGGGGGGGCCAGAGTCGCCCTCCTGCGACCTGCAACGGCTGAAGCA
GATGCTGATCCAACTCAAGGCGGAACCGTTGGGGGAAAAGAAATAGATGA
GAGAGAAGAAGCAGAGTGCGAACAGGAAGGAGGAGCAG
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Synonyms
Publications