jgi.p|Nanoce1779_2|523707, mRNA_492 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|523707
Unique NamemRNA_492
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length879
Alignment locationscaffold_3:1190119..1190997 -

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Properties
Property NameValue
TranscriptId523793
TrackFilteredModels2
ProteinId523707
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1190119..1190997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|523707gene_492Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_492CDS_492Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|523707mRNA_492-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_492 ID=mRNA_492|Name=jgi.p|Nanoce1779_2|523707|organism=Nannochloropsis oceanica|type=mRNA|length=879bp
ATGACTTCGACCGCGGGAGCCGTGGGGGGAGAAGGAACAGAAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCGACGACAATTCAAGCCAAGGCAAAGCATA
AAATTAAAATCGTGCAGTGGGGAGAGGTCGTGGTGCATACGTGCCGCCGC
AAGCCCTCCCCTGATTCCGTTCCTGCCCATGGCGCTTGGCCTTTGGGTCT
AGGTGCAGAAGACGGGCATCCACCACGATTAACGACGGTGGATAGATTTG
AGGTCGCGAAGCAGGAAGAGTTGGAGAGGCGGTTACAGGAGTTACCAAAA
CGGTTGCGGAAGGCAACGGCTGCCGGGGGAGGAGGGTTGGAGACGAGGCA
GTTTGACTATAAGAGCCCGGGGGAGAAGAATCCCTTATTTGGTCCCTTGG
ATGAACGGAGGCGGAAGTTGGTTCTGATCCAGGCATTGGAGCAGGGGGAG
GGCGGAAAGGAGGAAGAGGGGTTGTGTGGGTCTCCCAGGAAGATGGGCAT
GGAGACAAGTGCCTATTTGAATCTGTACAATGCCATGGAAGAGCAGGAGG
AGGCTCGAAGCAATGAGTTGGACGAATTACGTGCCTCGAGGAAAAAGATT
GGGTGTTCGTGTCATCATACCAGCAAGGCGCCAGACAAACTGAGCTTGAA
GAAGTTGAAGGAAGAACTGCATCGCAGGCACCTTAGTGCCCCAGGCACGG
ATAAGGCTATACTAGTCGAGCAATTAAAGGAGGTCTTAAAGGACGAACGG
CTCTGTAGTGCGGAAGGGGGGCCTGTCGAATGTGAATGTTTAACAGCAGG
TGTTCCTTGCCATGCTGATGTTTGTGGGTGTTGCGCGGGGAAGAAGCCTG
GAAGGGGGGGAGGAGGGGGGGGGGGGTAG
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protein sequence of jgi.p|Nanoce1779_2|523707

>mRNA_492-protein ID=mRNA_492-protein|Name=jgi.p|Nanoce1779_2|523707|organism=Nannochloropsis oceanica|type=polypeptide|length=293bp
MTSTAGAVGGEGTEAAAAAAAAAATTIQAKAKHKIKIVQWGEVVVHTCRR
KPSPDSVPAHGAWPLGLGAEDGHPPRLTTVDRFEVAKQEELERRLQELPK
RLRKATAAGGGGLETRQFDYKSPGEKNPLFGPLDERRRKLVLIQALEQGE
GGKEEEGLCGSPRKMGMETSAYLNLYNAMEEQEEARSNELDELRASRKKI
GCSCHHTSKAPDKLSLKKLKEELHRRHLSAPGTDKAILVEQLKEVLKDER
LCSAEGGPVECECLTAGVPCHADVCGCCAGKKPGRGGGGGGG*
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mRNA from alignment at scaffold_3:1190119..1190997-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_492 ID=mRNA_492|Name=jgi.p|Nanoce1779_2|523707|organism=Nannochloropsis oceanica|type=mRNA|length=879bp|location=Sequence derived from alignment at scaffold_3:1190119..1190997- (Nannochloropsis oceanica)
ATGACTTCGACCGCGGGAGCCGTGGGGGGAGAAGGAACAGAAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCGACGACAATTCAAGCCAAGGCAAAGCATA
AAATTAAAATCGTGCAGTGGGGAGAGGTCGTGGTGCATACGTGCCGCCGC
AAGCCCTCCCCTGATTCCGTTCCTGCCCATGGCGCTTGGCCTTTGGGTCT
AGGTGCAGAAGACGGGCATCCACCACGATTAACGACGGTGGATAGATTTG
AGGTCGCGAAGCAGGAAGAGTTGGAGAGGCGGTTACAGGAGTTACCAAAA
CGGTTGCGGAAGGCAACGGCTGCCGGGGGAGGAGGGTTGGAGACGAGGCA
GTTTGACTATAAGAGCCCGGGGGAGAAGAATCCCTTATTTGGTCCCTTGG
ATGAACGGAGGCGGAAGTTGGTTCTGATCCAGGCATTGGAGCAGGGGGAG
GGCGGAAAGGAGGAAGAGGGGTTGTGTGGGTCTCCCAGGAAGATGGGCAT
GGAGACAAGTGCCTATTTGAATCTGTACAATGCCATGGAAGAGCAGGAGG
AGGCTCGAAGCAATGAGTTGGACGAATTACGTGCCTCGAGGAAAAAGATT
GGGTGTTCGTGTCATCATACCAGCAAGGCGCCAGACAAACTGAGCTTGAA
GAAGTTGAAGGAAGAACTGCATCGCAGGCACCTTAGTGCCCCAGGCACGG
ATAAGGCTATACTAGTCGAGCAATTAAAGGAGGTCTTAAAGGACGAACGG
CTCTGTAGTGCGGAAGGGGGGCCTGTCGAATGTGAATGTTTAACAGCAGG
TGTTCCTTGCCATGCTGATGTTTGTGGGTGTTGCGCGGGGAAGAAGCCTG
GAAGGGGGGGAGGAGGGGGGGGGGGGTAG
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Coding sequence (CDS) from alignment at scaffold_3:1190119..1190997-

>mRNA_492 ID=mRNA_492|Name=jgi.p|Nanoce1779_2|523707|organism=Nannochloropsis oceanica|type=CDS|length=879bp|location=Sequence derived from alignment at scaffold_3:1190119..1190997- (Nannochloropsis oceanica)
ATGACTTCGACCGCGGGAGCCGTGGGGGGAGAAGGAACAGAAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCGACGACAATTCAAGCCAAGGCAAAGCATA
AAATTAAAATCGTGCAGTGGGGAGAGGTCGTGGTGCATACGTGCCGCCGC
AAGCCCTCCCCTGATTCCGTTCCTGCCCATGGCGCTTGGCCTTTGGGTCT
AGGTGCAGAAGACGGGCATCCACCACGATTAACGACGGTGGATAGATTTG
AGGTCGCGAAGCAGGAAGAGTTGGAGAGGCGGTTACAGGAGTTACCAAAA
CGGTTGCGGAAGGCAACGGCTGCCGGGGGAGGAGGGTTGGAGACGAGGCA
GTTTGACTATAAGAGCCCGGGGGAGAAGAATCCCTTATTTGGTCCCTTGG
ATGAACGGAGGCGGAAGTTGGTTCTGATCCAGGCATTGGAGCAGGGGGAG
GGCGGAAAGGAGGAAGAGGGGTTGTGTGGGTCTCCCAGGAAGATGGGCAT
GGAGACAAGTGCCTATTTGAATCTGTACAATGCCATGGAAGAGCAGGAGG
AGGCTCGAAGCAATGAGTTGGACGAATTACGTGCCTCGAGGAAAAAGATT
GGGTGTTCGTGTCATCATACCAGCAAGGCGCCAGACAAACTGAGCTTGAA
GAAGTTGAAGGAAGAACTGCATCGCAGGCACCTTAGTGCCCCAGGCACGG
ATAAGGCTATACTAGTCGAGCAATTAAAGGAGGTCTTAAAGGACGAACGG
CTCTGTAGTGCGGAAGGGGGGCCTGTCGAATGTGAATGTTTAACAGCAGG
TGTTCCTTGCCATGCTGATGTTTGTGGGTGTTGCGCGGGGAAGAAGCCTG
GAAGGGGGGGAGGAGGGGGGGGGGGGTAG
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Synonyms
Publications