jgi.p|Nanoce1779_2|576560, mRNA_207 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576560
Unique Name	mRNA_207
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1902
Alignment location	scaffold_3:522025..523926 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576646
Track	FilteredModels2
ProteinId	576560

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:522025..523926 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576560	gene_207	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576560	mRNA_207-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_207	CDS_207	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:522025..523926+
coding sequence from alignment at scaffold_3:522025..523926+

mRNA sequence

>mRNA_207 ID=mRNA_207|Name=jgi.p|Nanoce1779_2|576560|organism=Nannochloropsis oceanica|type=mRNA|length=1902bp
ACAGCGTTGCCTGGTCGAGCTATTTACAAGCCAAGGCACAGCCTAGGCCG
CGTGATCCTTTCTCGTGCGTCGTTATCATAATCTTCTCCTCATCGTCGTG
ATCGCAGCAGAAGCAGTAGCACACGTGTCTTGTAGAGGTTTGGACTGCGA
GCCAATTTGACCGCAGCGGCAGCACTAGGAGCAGTAGCAGCATCAGAAAG
AGGAGTAAGATCAGCAGCACTATCGACACCATCATTGGCCGGCTTTGGAG
GCAAGCAGGGGAGGACAAGCTGCTGCACCTTTCTCCAAATCACTACCCTC
CGACGAGTCAAGGCGTTCCCCATCCACCCTCCAAGGCGGAAGAGCAATGT
GCATCTAATCGAGAGCGCCCATCTATCCTTTCCTCTTCAATCGACATTTC
CCTCGGTCACCGGCACTCGCGTTCCCGTCGCCTGCTCCGCATATTTTTAG
TAGCTTCGCCAACATCGTTGGGTTGTCGTGACAGCAGCAGTGGTAGTAGC
AGCAGATTCAGCACCAGCAATATTTGCAACCATGCCAATGGATGGATCTG
AGTGGCCCAGCAGCGTGGATCAGTTTCCACTCGAGAAAAAGATTGGGCAA
GGCGCTTTCGCCACTGTTTACAAGGCTCATTGCCCTGCCAAAGGAAACAT
CCCCGTGGCTATCAAGGTAATGGACCTGGAAAATATCAACTCATCATTTG
AAGACATTCGGCAAGAGGTTCAAATGATGCGCATGTCGGACCATCCCAAC
ATATTGCGGTGCTACTGCTCCTTCGTGCATGAGTGCCAACTGTGGTTGGT
GATGCAAATGATGGAAAAGGGCTCCTGTCTACACGTCATGACCCAGGCCA
AACGCATGGGTATGGGGGAGGGTATGCGCGAGGACTGGCTGGCGTATATC
TTAAGGGAATCGCTGCAGGGGCTCAAATATTTTCATGACCAGGGCCAGAT
TCACCGGGACGTCAAGGCGGGGAACATTCTATTGGATGGACAAGGTAATG
TCCGCCTCGCGGATTTTGGGGTATCTGGGTGGTTGATCAATTCCGGAGAT
CGGCGGCAGACGACCAAGACGTTTGTGGGGACACCGTGTTGGATGGCGCC
TGAGGTGATGGAGCAGATCGATGGGTATGACTACAAGGCGGATATTTGGT
CGTTCGGGATCACGGCATTGGAGCTAGCGAAGGGGTATGCGCCCTATGCA
CACTTTGCCCCCATGAAGGTCTTGATTATGACCATTCAGCAGGAGGTAAG
GGTCTGCAGATGGGAGGGAAGAGAGGGAGTGGCAATTAGTAAGTGTCTTC
CCGATCCATCTGCCGCTTTTCATGGTATACCCTTCTTCCCGCCCTTTTTC
ACTGCCTCTCTCGTTCCCTTGCTCCTTTCTTTTTGTAGGCGCCAAGCCTT
AAGAGCTACCCGGATGATCGATCCGTGGACGGCGAGGCTTTCTCACGTGG
GTTCCGAGAGATCGTGCGGTTGTGCCTGCAAAAAGACCCGAAGAAACGCC
CCACCTGCACCACCCTCTTGGGCCACAAGTACTTCGCAAAGCGAAGCAAG
GACTCCATGGTCACGGATTTGTTGGAAAGGATAGAGACGGTAGGGGAAGG
GGACATGGAGAATGTTCCCAGGCTTCCGGGCACGGGTCCCGCGTACATCT
CGCATGATGGCGCCGAGACTCTCAGGGCGGGAGCGGCGGGTATTGCTCGG
GGAGGGGGGGAAGGAGGAGAGGGAGATTACCAAGATACGGTCAAGGCCGG
AAAGGAAGGTGGAGGGGGAGGAGGGAAGATGCCGCCGGCAAGCGAGGAGT
ATGTGAAGGGGACGACCTGGGTTTTTGATGATGGCTCGCAGGTGATATTG
AGGGCAGATGGGGAAGGGAAGGGGGGGGCTGGAGGGGAGGGAGGAGGAGG
GC

protein sequence of jgi.p|Nanoce1779_2|576560

>mRNA_207-protein ID=mRNA_207-protein|Name=jgi.p|Nanoce1779_2|576560|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MPMDGSEWPSSVDQFPLEKKIGQGAFATVYKAHCPAKGNIPVAIKVMDLE
NINSSFEDIRQEVQMMRMSDHPNILRCYCSFVHECQLWLVMQMMEKGSCL
HVMTQAKRMGMGEGMREDWLAYILRESLQGLKYFHDQGQIHRDVKAGNIL
LDGQGNVRLADFGVSGWLINSGDRRQTTKTFVGTPCWMAPEVMEQIDGYD
YKADIWSFGITALELAKGYAPYAHFAPMKVLIMTIQQEVRVCRWEGREGV
AISKCLPDPSAAFHGIPFFPPFFTASLVPLLLSFCRRQALRATRMIDPWT
ARLSHVGSERSCGCACKKTRRNAPPAPPSWATSTSQSEARTPWSRICWKG
*

mRNA from alignment at scaffold_3:522025..523926+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_207 ID=mRNA_207|Name=jgi.p|Nanoce1779_2|576560|organism=Nannochloropsis oceanica|type=mRNA|length=1902bp|location=Sequence derived from alignment at scaffold_3:522025..523926+ (Nannochloropsis oceanica)
ACAGCGTTGCCTGGTCGAGCTATTTACAAGCCAAGGCACAGCCTAGGCCG
CGTGATCCTTTCTCGTGCGTCGTTATCATAATCTTCTCCTCATCGTCGTG
ATCGCAGCAGAAGCAGTAGCACACGTGTCTTGTAGAGGTTTGGACTGCGA
GCCAATTTGACCGCAGCGGCAGCACTAGGAGCAGTAGCAGCATCAGAAAG
AGGAGTAAGATCAGCAGCACTATCGACACCATCATTGGCCGGCTTTGGAG
GCAAGCAGGGGAGGACAAGCTGCTGCACCTTTCTCCAAATCACTACCCTC
CGACGAGTCAAGGCGTTCCCCATCCACCCTCCAAGGCGGAAGAGCAATGT
GCATCTAATCGAGAGCGCCCATCTATCCTTTCCTCTTCAATCGACATTTC
CCTCGGTCACCGGCACTCGCGTTCCCGTCGCCTGCTCCGCATATTTTTAG
TAGCTTCGCCAACATCGTTGGGTTGTCGTGACAGCAGCAGTGGTAGTAGC
AGCAGATTCAGCACCAGCAATATTTGCAACCATGCCAATGGATGGATCTG
AGTGGCCCAGCAGCGTGGATCAGTTTCCACTCGAGAAAAAGATTGGGCAA
GGCGCTTTCGCCACTGTTTACAAGGCTCATTGCCCTGCCAAAGGAAACAT
CCCCGTGGCTATCAAGGTAATGGACCTGGAAAATATCAACTCATCATTTG
AAGACATTCGGCAAGAGGTTCAAATGATGCGCATGTCGGACCATCCCAAC
ATATTGCGGTGCTACTGCTCCTTCGTGCATGAGTGCCAACTGTGGTTGGT
GATGCAAATGATGGAAAAGGGCTCCTGTCTACACGTCATGACCCAGGCCA
AACGCATGGGTATGGGGGAGGGTATGCGCGAGGACTGGCTGGCGTATATC
TTAAGGGAATCGCTGCAGGGGCTCAAATATTTTCATGACCAGGGCCAGAT
TCACCGGGACGTCAAGGCGGGGAACATTCTATTGGATGGACAAGGTAATG
TCCGCCTCGCGGATTTTGGGGTATCTGGGTGGTTGATCAATTCCGGAGAT
CGGCGGCAGACGACCAAGACGTTTGTGGGGACACCGTGTTGGATGGCGCC
TGAGGTGATGGAGCAGATCGATGGGTATGACTACAAGGCGGATATTTGGT
CGTTCGGGATCACGGCATTGGAGCTAGCGAAGGGGTATGCGCCCTATGCA
CACTTTGCCCCCATGAAGGTCTTGATTATGACCATTCAGCAGGAGGTAAG
GGTCTGCAGATGGGAGGGAAGAGAGGGAGTGGCAATTAGTAAGTGTCTTC
CCGATCCATCTGCCGCTTTTCATGGTATACCCTTCTTCCCGCCCTTTTTC
ACTGCCTCTCTCGTTCCCTTGCTCCTTTCTTTTTGTAGGCGCCAAGCCTT
AAGAGCTACCCGGATGATCGATCCGTGGACGGCGAGGCTTTCTCACGTGG
GTTCCGAGAGATCGTGCGGTTGTGCCTGCAAAAAGACCCGAAGAAACGCC
CCACCTGCACCACCCTCTTGGGCCACAAGTACTTCGCAAAGCGAAGCAAG
GACTCCATGGTCACGGATTTGTTGGAAAGGATAGAGACGGTAGGGGAAGG
GGACATGGAGAATGTTCCCAGGCTTCCGGGCACGGGTCCCGCGTACATCT
CGCATGATGGCGCCGAGACTCTCAGGGCGGGAGCGGCGGGTATTGCTCGG
GGAGGGGGGGAAGGAGGAGAGGGAGATTACCAAGATACGGTCAAGGCCGG
AAAGGAAGGTGGAGGGGGAGGAGGGAAGATGCCGCCGGCAAGCGAGGAGT
ATGTGAAGGGGACGACCTGGGTTTTTGATGATGGCTCGCAGGTGATATTG
AGGGCAGATGGGGAAGGGAAGGGGGGGGCTGGAGGGGAGGGAGGAGGAGG
GC

Coding sequence (CDS) from alignment at scaffold_3:522025..523926+

>mRNA_207 ID=mRNA_207|Name=jgi.p|Nanoce1779_2|576560|organism=Nannochloropsis oceanica|type=CDS|length=1053bp|location=Sequence derived from alignment at scaffold_3:522025..523926+ (Nannochloropsis oceanica)
ATGCCAATGGATGGATCTGAGTGGCCCAGCAGCGTGGATCAGTTTCCACT
CGAGAAAAAGATTGGGCAAGGCGCTTTCGCCACTGTTTACAAGGCTCATT
GCCCTGCCAAAGGAAACATCCCCGTGGCTATCAAGGTAATGGACCTGGAA
AATATCAACTCATCATTTGAAGACATTCGGCAAGAGGTTCAAATGATGCG
CATGTCGGACCATCCCAACATATTGCGGTGCTACTGCTCCTTCGTGCATG
AGTGCCAACTGTGGTTGGTGATGCAAATGATGGAAAAGGGCTCCTGTCTA
CACGTCATGACCCAGGCCAAACGCATGGGTATGGGGGAGGGTATGCGCGA
GGACTGGCTGGCGTATATCTTAAGGGAATCGCTGCAGGGGCTCAAATATT
TTCATGACCAGGGCCAGATTCACCGGGACGTCAAGGCGGGGAACATTCTA
TTGGATGGACAAGGTAATGTCCGCCTCGCGGATTTTGGGGTATCTGGGTG
GTTGATCAATTCCGGAGATCGGCGGCAGACGACCAAGACGTTTGTGGGGA
CACCGTGTTGGATGGCGCCTGAGGTGATGGAGCAGATCGATGGGTATGAC
TACAAGGCGGATATTTGGTCGTTCGGGATCACGGCATTGGAGCTAGCGAA
GGGGTATGCGCCCTATGCACACTTTGCCCCCATGAAGGTCTTGATTATGA
CCATTCAGCAGGAGGTAAGGGTCTGCAGATGGGAGGGAAGAGAGGGAGTG
GCAATTAGTAAGTGTCTTCCCGATCCATCTGCCGCTTTTCATGGTATACC
CTTCTTCCCGCCCTTTTTCACTGCCTCTCTCGTTCCCTTGCTCCTTTCTT
TTTGTAGGCGCCAAGCCTTAAGAGCTACCCGGATGATCGATCCGTGGACG
GCGAGGCTTTCTCACGTGGGTTCCGAGAGATCGTGCGGTTGTGCCTGCAA
AAAGACCCGAAGAAACGCCCCACCTGCACCACCCTCTTGGGCCACAAGTA
CTTCGCAAAGCGAAGCAAGGACTCCATGGTCACGGATTTGTTGGAAAGGA
TAG

Synonyms

Publications