jgi.p|Nanoce1779_2|577741, mRNA_568 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577741
Unique Name	mRNA_568
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	882
Alignment location	scaffold_3:1378813..1380776 +

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Properties


Property Name	Value
TranscriptId	577827
Track	FilteredModels2
ProteinId	577741

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1378813..1380776 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577741	gene_568	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577741	mRNA_568-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_568	CDS_568	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1378813..1380776+
coding sequence from alignment at scaffold_3:1378813..1380776+

mRNA sequence

>mRNA_568 ID=mRNA_568|Name=jgi.p|Nanoce1779_2|577741|organism=Nannochloropsis oceanica|type=mRNA|length=882bp
ACAGGAGTAAGGCCATCCCCGCAACAGTTTACCCCCGGAATCGCGCGCTT
GTTTGTCTTCCCTACGTCGTCGCTGCCTCATCATCGCTCCGAATACACAC
CGCTATCACACGCCGCCAATACTACACCACAAGCACACAACCAACCAAAC
AAGCCATGACAGATCACTTTGTCCCGGCCGTGACCGCCATTTTTGTACTT
GACAACGACGGGCAACGGCTCTCAGCCAAGTACTTTAGCCCGCAATTTGC
CAACAATGCTGATAAGACGGCCTTCGAAATGCGCTTGTTCAAAAAGACTC
GCCATAATAACGCCCGGTCAGAATCCGAGATTATCATGATGGACAACTTC
ACGGTTGTCTTCCGCTCGGGTAGTGACGCGCATTTTTACGTGGTGGGGGA
TGGGAACGAGAACGAGCTTATCCTAGCTACAGTTCTCGATGCCTTCCACG
AGGCCATCTCCATGCTCCTCCGCGGGCAGGTGGACCGCCGCTCCCTCCTT
GACAACTTGGACCTGTTAATGCTCACCGTGGACGAGCTGGTAGATGGGGG
TACCATCCTCGAGACGGACTCGACGGCCATCGTCTCTCGTGTGCTCATGC
GCGGTGTCTCGGGTGCTCAAGGTGTGCCTTTGGCAGACATGACCATCTCT
CAAGCCTTTGCCTCGGCAAAGGACTCTTTCATCAAGAGTATGGGCAACAG
AGAGGGTGCTTTTTAGGGAGAAGGAAGAGGAGAAATTGTAGGGCTAAGAA
GGTGGAGAAACGCGGGAGGGAGGGAGGGCTGGGGAGGGGGAAGGAGAGTG
GCAGACACGGCCTGCCTGTATTTGTACAACCAAAAGGAGAATTGAGCAAA
CTTTGAAAGAAAATACGAAAGACGAACCCACA

protein sequence of jgi.p|Nanoce1779_2|577741

>mRNA_568-protein ID=mRNA_568-protein|Name=jgi.p|Nanoce1779_2|577741|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MTDHFVPAVTAIFVLDNDGQRLSAKYFSPQFANNADKTAFEMRLFKKTRH
NNARSESEIIMMDNFTVVFRSGSDAHFYVVGDGNENELILATVLDAFHEA
ISMLLRGQVDRRSLLDNLDLLMLTVDELVDGGTILETDSTAIVSRVLMRG
VSGAQGVPLADMTISQAFASAKDSFIKSMGNREGAF*

mRNA from alignment at scaffold_3:1378813..1380776+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_568 ID=mRNA_568|Name=jgi.p|Nanoce1779_2|577741|organism=Nannochloropsis oceanica|type=mRNA|length=1964bp|location=Sequence derived from alignment at scaffold_3:1378813..1380776+ (Nannochloropsis oceanica)
ACAGGAGTAAGGCCATCCCCGCAACAGTTTACCCCCGGAATCGCGCGCTT
GTTTGTCTTCCCTACGTCGTCGCTGCCTCATCATCGCTCCGAATACACAC
CGCTATCACACGCCGCCAATACTACACCACAAGCACACAACCAACCAAAC
AAGCCATGACAGATGTGAGTCCACATCTTCTTGTTTCCTCTGTGAACGCA
GCCTCCGCCGTGTTGCCTGCTTTTCCTTTGTCTCGCACTCACTTCCCTCC
CTACACCCCTACAATTCCTTTCCCGCAGCACTTTGTCCCGGCCGTGACCG
CCATTTTTGTACTTGACAACGACGGGCAACGGCTCTCAGCCAAGTACTTT
AGCCCGCAATTTGCCAACAATGCTGATAAGGTGAGTTTGGAGATGGGGGA
GTAGAGGAGGCGGCGAGCGAGGACGGAGAAAAAAGACAGGTGGAAGGAGG
AGTGGCGCTCACGGCACGGGCGAAGGAAGATAGGTTTGCCTTCTATGTTG
TAGACGTATGCCACTAAATGGCAACAGACAAATTATGGAGAGAAAGGCTA
TCGAAGGCTTGCATGCTTTTATTGGCTTTTATTCATCCCACCTTCCCCCC
CCCCTCCTTTTTCCTGTCACCGTCCCTCTCTCCCGACCAGACGGCCTTCG
AAATGCGCTTGTTCAAAAAGACTCGCCATAATAACGCCCGGTCAGAATGT
ACGTGCTCTAAGCTACTAATCCATTTATGGATTAGAGACAAAGGGGGAGA
GAAGGAGTAGGGCACGGGACGGAAGAGAATAGGAGGAGGAGGGTGGAAGG
ATCGGGTGTCTTGACAGTTGTGATATTCCGGGAGGTCCCTGGCGTCCTCT
TGCGATTATTAATATTTCCTCCATCTTTGCTTCTCTCTTTCTCTTCCCTC
TTCGTTCAAGCCGAGATTATCATGATGGACAACTTCACGGTTGTCTTCCG
CTCGGGTAGTGACGCGCATTTTTACGTGGTGGGGGATGGGAACGAGGTAC
GGACGGAGGGAGGGACGGTTGGAGGGAGAAAGAAGAGACTAATCGATCAC
AATTCAGATGTGGAATTCATCTGAAAATAGGCATTTCGTGTACTAAATAT
CTCCTCTCTTGTCGCTTTTTTCTCCCTCTTTTCTTCCCCTCCTCAGAACG
AGCTTATCCTAGCTACAGTTCTCGATGCCTTCCACGAGGCCATCTCCATG
CTCCTCCGGTACGTCCCTCCCTCCCTCTTTCCCTCCACACCTCCCTACCT
CACATTTTCAGTTGCCGTGTGGATAGCTCGCGCCTTGTTCCGCGGGACTT
TTGATCGATGCTGATGATGCTTGAAGAGACACAAGAGTACTCATCCTCCC
CTTTCCTCCCTCGATCCCTCGCTCTCTTCCCTTCCTCCTTTTCTCAGCGG
GCAGGTGGACCGCCGCTCCCTCCTTGACAACTTGGACCTGTTAATGCTCA
CCGTGGACGAGCTGGTAGATGGGGGTACCATCCTCGAGACGGACTCGACG
GCCATCGTCTCTCGTGTGCTCATGTAGGAAGGGAGGGAGGGGGGAAGGGA
TTTGATGGATGTCCTTGTTAACAATTACAGAGTATCTTGCTTTGTTGCTG
CATATAGATGTGTATTTACCCACCCACGACTACGCTTCCTCATGTACCCT
GCTCGCCCTCTCCCTCCCTCCCTATTCCAGGCGCGGTGTCTCGGGTGCTC
AAGGTGTGCCTTTGGCAGACATGACCATCTCTCAAGCCTTTGCCTCGGCA
AAGGACTCTTTCATCAAGAGTATGGGCAACAGAGAGGGTGCTTTTTAGGG
AGAAGGAAGAGGAGAAATTGTAGGGCTAAGAAGGTGGAGAAACGCGGGAG
GGAGGGAGGGCTGGGGAGGGGGAAGGAGAGTGGCAGACACGGCCTGCCTG
TATTTGTACAACCAAAAGGAGAATTGAGCAAACTTTGAAAGAAAATACGA
AAGACGAACCCACA

Coding sequence (CDS) from alignment at scaffold_3:1378813..1380776+

>mRNA_568 ID=mRNA_568|Name=jgi.p|Nanoce1779_2|577741|organism=Nannochloropsis oceanica|type=CDS|length=3927bp|location=Sequence derived from alignment at scaffold_3:1378813..1380776+ (Nannochloropsis oceanica)
ATGACAGATCACTTTGTCCCGGCCGTGACCGCCATTTTTGTACTTGACAA
CGACGGGCAACGGCTCTCAGCCAAGTACTTTAGCCCGCAATTTGCCAACA
ATGCTGATAAGACGGCCTTCGAAATGCGCTTGTTCAAAAAGACTCGCCAT
AATAACGCCCGGTCAGAATCCGAGATTATCATGATGGACAACTTCACGGT
TGTCTTCCGCTCGGGTAGTGACGCGCATTTTTACGTGGTGGGGGATGGGA
ACGAGAACGAGCTTATCCTAGCTACAGTTCTCGATGCCTTCCACGAGGCC
ATCTCCATGCTCCTCCGCGGGCAGGTGGACCGCCGCTCCCTCCTTGACAA
CTTGGACCTGTTAATGCTCACCGTGGACGAGCTGGTAGATGGGGGTACCA
TCCTCGAGACGGACTCGACGGCCATCGTCTCTCGTGTGCTCATGCGCGGT
GTCTCGGGTGCTCAAGGTGTGCCTTTGGCAGACATGACCATCTCTCAAGC
CTTTGCCTCGGCAAAGGACTCTTTCATCAAGAGTATGGGCAACAGAGAGG
GTGCTTTTTAGATGACAGATCACTTTGTCCCGGCCGTGACCGCCATTTTT
GTACTTGACAACGACGGGCAACGGCTCTCAGCCAAGTACTTTAGCCCGCA
ATTTGCCAACAATGCTGATAAGACGGCCTTCGAAATGCGCTTGTTCAAAA
AGACTCGCCATAATAACGCCCGGTCAGAATCCGAGATTATCATGATGGAC
AACTTCACGGTTGTCTTCCGCTCGGGTAGTGACGCGCATTTTTACGTGGT
GGGGGATGGGAACGAGAACGAGCTTATCCTAGCTACAGTTCTCGATGCCT
TCCACGAGGCCATCTCCATGCTCCTCCGCGGGCAGGTGGACCGCCGCTCC
CTCCTTGACAACTTGGACCTGTTAATGCTCACCGTGGACGAGCTGGTAGA
TGGGGGTACCATCCTCGAGACGGACTCGACGGCCATCGTCTCTCGTGTGC
TCATGCGCGGTGTCTCGGGTGCTCAAGGTGTGCCTTTGGCAGACATGACC
ATCTCTCAAGCCTTTGCCTCGGCAAAGGACTCTTTCATCAAGAGTATGGG
CAACAGAGAGGGTGCTTTTTAGATGACAGATCACTTTGTCCCGGCCGTGA
CCGCCATTTTTGTACTTGACAACGACGGGCAACGGCTCTCAGCCAAGTAC
TTTAGCCCGCAATTTGCCAACAATGCTGATAAGACGGCCTTCGAAATGCG
CTTGTTCAAAAAGACTCGCCATAATAACGCCCGGTCAGAATCCGAGATTA
TCATGATGGACAACTTCACGGTTGTCTTCCGCTCGGGTAGTGACGCGCAT
TTTTACGTGGTGGGGGATGGGAACGAGAACGAGCTTATCCTAGCTACAGT
TCTCGATGCCTTCCACGAGGCCATCTCCATGCTCCTCCGCGGGCAGGTGG
ACCGCCGCTCCCTCCTTGACAACTTGGACCTGTTAATGCTCACCGTGGAC
GAGCTGGTAGATGGGGGTACCATCCTCGAGACGGACTCGACGGCCATCGT
CTCTCGTGTGCTCATGCGCGGTGTCTCGGGTGCTCAAGGTGTGCCTTTGG
CAGACATGACCATCTCTCAAGCCTTTGCCTCGGCAAAGGACTCTTTCATC
AAGAGTATGGGCAACAGAGAGGGTGCTTTTTAGATGACAGATCACTTTGT
CCCGGCCGTGACCGCCATTTTTGTACTTGACAACGACGGGCAACGGCTCT
CAGCCAAGTACTTTAGCCCGCAATTTGCCAACAATGCTGATAAGACGGCC
TTCGAAATGCGCTTGTTCAAAAAGACTCGCCATAATAACGCCCGGTCAGA
ATCCGAGATTATCATGATGGACAACTTCACGGTTGTCTTCCGCTCGGGTA
GTGACGCGCATTTTTACGTGGTGGGGGATGGGAACGAGAACGAGCTTATC
CTAGCTACAGTTCTCGATGCCTTCCACGAGGCCATCTCCATGCTCCTCCG
CGGGCAGGTGGACCGCCGCTCCCTCCTTGACAACTTGGACCTGTTAATGC
TCACCGTGGACGAGCTGGTAGATGGGGGTACCATCCTCGAGACGGACTCG
ACGGCCATCGTCTCTCGTGTGCTCATGCGCGGTGTCTCGGGTGCTCAAGG
TGTGCCTTTGGCAGACATGACCATCTCTCAAGCCTTTGCCTCGGCAAAGG
ACTCTTTCATCAAGAGTATGGGCAACAGAGAGGGTGCTTTTTAGATGACA
GATCACTTTGTCCCGGCCGTGACCGCCATTTTTGTACTTGACAACGACGG
GCAACGGCTCTCAGCCAAGTACTTTAGCCCGCAATTTGCCAACAATGCTG
ATAAGACGGCCTTCGAAATGCGCTTGTTCAAAAAGACTCGCCATAATAAC
GCCCGGTCAGAATCCGAGATTATCATGATGGACAACTTCACGGTTGTCTT
CCGCTCGGGTAGTGACGCGCATTTTTACGTGGTGGGGGATGGGAACGAGA
ACGAGCTTATCCTAGCTACAGTTCTCGATGCCTTCCACGAGGCCATCTCC
ATGCTCCTCCGCGGGCAGGTGGACCGCCGCTCCCTCCTTGACAACTTGGA
CCTGTTAATGCTCACCGTGGACGAGCTGGTAGATGGGGGTACCATCCTCG
AGACGGACTCGACGGCCATCGTCTCTCGTGTGCTCATGCGCGGTGTCTCG
GGTGCTCAAGGTGTGCCTTTGGCAGACATGACCATCTCTCAAGCCTTTGC
CTCGGCAAAGGACTCTTTCATCAAGAGTATGGGCAACAGAGAGGGTGCTT
TTTAGATGACAGATCACTTTGTCCCGGCCGTGACCGCCATTTTTGTACTT
GACAACGACGGGCAACGGCTCTCAGCCAAGTACTTTAGCCCGCAATTTGC
CAACAATGCTGATAAGACGGCCTTCGAAATGCGCTTGTTCAAAAAGACTC
GCCATAATAACGCCCGGTCAGAATCCGAGATTATCATGATGGACAACTTC
ACGGTTGTCTTCCGCTCGGGTAGTGACGCGCATTTTTACGTGGTGGGGGA
TGGGAACGAGAACGAGCTTATCCTAGCTACAGTTCTCGATGCCTTCCACG
AGGCCATCTCCATGCTCCTCCGCGGGCAGGTGGACCGCCGCTCCCTCCTT
GACAACTTGGACCTGTTAATGCTCACCGTGGACGAGCTGGTAGATGGGGG
TACCATCCTCGAGACGGACTCGACGGCCATCGTCTCTCGTGTGCTCATGC
GCGGTGTCTCGGGTGCTCAAGGTGTGCCTTTGGCAGACATGACCATCTCT
CAAGCCTTTGCCTCGGCAAAGGACTCTTTCATCAAGAGTATGGGCAACAG
AGAGGGTGCTTTTTAGATGACAGATCACTTTGTCCCGGCCGTGACCGCCA
TTTTTGTACTTGACAACGACGGGCAACGGCTCTCAGCCAAGTACTTTAGC
CCGCAATTTGCCAACAATGCTGATAAGACGGCCTTCGAAATGCGCTTGTT
CAAAAAGACTCGCCATAATAACGCCCGGTCAGAATCCGAGATTATCATGA
TGGACAACTTCACGGTTGTCTTCCGCTCGGGTAGTGACGCGCATTTTTAC
GTGGTGGGGGATGGGAACGAGAACGAGCTTATCCTAGCTACAGTTCTCGA
TGCCTTCCACGAGGCCATCTCCATGCTCCTCCGCGGGCAGGTGGACCGCC
GCTCCCTCCTTGACAACTTGGACCTGTTAATGCTCACCGTGGACGAGCTG
GTAGATGGGGGTACCATCCTCGAGACGGACTCGACGGCCATCGTCTCTCG
TGTGCTCATGCGCGGTGTCTCGGGTGCTCAAGGTGTGCCTTTGGCAGACA
TGACCATCTCTCAAGCCTTTGCCTCGGCAAAGGACTCTTTCATCAAGAGT
ATGGGCAACAGAGAGGGTGCTTTTTAG

Synonyms

Publications