|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 250982 |
| Track | FilteredModels2 |
| ProteinId | 250896 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_30 | supercontig | scaffold_30:277705..279989 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9037 ID=mRNA_9037|Name=jgi.p|Nanoce1779_2|250896|organism=Nannochloropsis oceanica|type=mRNA|length=2078bp
ATTTGTGTTGCGTCAGACAGGGTGGCATAAGGTTGTGTAGGATGAGGCCT
CGCCGAAGCGACAACACAAGTAGTGTAAAGAGCGAAAGCACAAGACTCAC
GACTCGTCCTCTACCGCTACCCCCCCACAATCTACACAGCACAATCCAAG
GGTTATATCTGAACCACGAGCGAGACGCGCTGCTCCGTTTGTTTGCTTAG
CCTCGTTGGCCCCATTAATAAGAAATTAACCTCCTCACCCGTCCCTCTAC
CCTCAAGCCGATGTCCCTTCACCGTGTGCACCTCACCCATGAGGCCTTGT
TTTGCTGCGTCACTCAAGCCCTGTCGACAGAGCAACAAGAGGTCATGTCC
GTGCTTCTGGGCACCTGGACCACGCACCCCACCACGGGCGAAAACATCGA
AGCGGAGGTCCAGCACGTCGTCGTAATGAGCCGCACGGACCGGCGGAAAG
ACAGGGTGGAAGTTGGTTACGAGCAACTCGCGGAAGCTGAACAGGTTGCC
TCCGCCCTCAGCAAAGCCACGGGCCGAGAGACCCGTATCCTGGGTTGGTT
TCACTCTCACCCACATATCACCGTGTTGCCTAGCCATGTTGACTTACAAA
CACAAGCGCAATACCAGGCAATGGATGCTGGGTTTTTGGGATTGATTTGT
GCGGTGTTTCAAGATGATCTCAAGCAGCAGAGAGGACGGGTAGAGATTAC
GGCGTTTCAGTCCGTGCCTGGTGGTCGAGGGAGGGAGGGAGGGAGGGCCC
TAATGATGGATTTGGATAATGGTTTTATTCGTATCGATGACGAAGATTCG
ACGTCGTATGTGCATCACAGTATAGGGCTGGAATCGACAGGGGTGGAGAC
CGGGACTGTGAGGAAAGGCATTCCGATAGCTTTAGTGCCTTCAGCAGGAG
GAGATGGTGGAAGGGAGGGAGGGAAGGGAGCAGGGGGCAATGATGGGCCG
ACCACGGACGCGATGCGTTGCGTGGTGTCTTTGCAGGAGGTTTTGATGCA
AGAGGAACGTTACTTTTACGAAGCTGCTGCTCAAGCCAACCTACGGAACA
ATGCCATAAGCACCAGCACCAGCACCAGCACCAGCACCAGCATCAGCACC
AGCACCAGCAGCTGTAGTAGGGCGGGGGACGTCCATGCCTTGTACAATGC
CGCTGTCTATGGCAAAGCTCTTTCTTCTCTCTTGGAAGAGTCGGCGATAC
CCCTGATTCATACCTTGGAAAGCGTCCTCCTTAACGTGCGGCGGGAGAAA
GAGCGAGTGAAGCGAGCCGTGGAGAAAATGGAGGAGCATTCAAGGAGCAG
CGTCAGCGTCGCCGCTGGTAGCATGGAAGGAGTGATGAGCGTGAAGGAGG
GGGGAAGGAAAGGAAGAAGAGGGAATGGGATGATGGACGTGGATGAGTGT
CAACCTTCTGCTTCTCCCTACAGTTCTAGTGTACTTGCAGTCAGTCGACC
CGAGATCCTAAAAAAGGCAGCGGAGGGTTGGCAAATGCGAAGAATGGATG
GTAATGAGGACTATGATGTGATAGTAAGATTGACACGAGAATATGCTCTC
TTACCTTTCGGAGGCGAGGGGTTTGGTCAGTGGTGGCTGTCTGTAGGGGA
GGAAAAGGGAAGGCTGACGCGCATTGAGGGGAATAGGAATGGCAACCACA
CGGTGACCTTTGGTTTTGTCGTGGCCAGGCCAGGAGAGCGGGACAGTAGA
GGGGAAAAGGAGAAAGAGACAATTGTCCAAGTCTTGGGATCACAGGACTC
GGTGACCTTCTGGTGCCGGCGGGTGCGACCCATTGTGAGCTCCGATGCCA
ACCTCCTGCCTCCATCATGAGGGTTGATTATCTTGGTTAAGGTGCAAGCG
AGACATGAGACAATGTGTATAAAAGAATAATGTAAAGAATGGCACCGTCA
ACATTCATGCAGCTTTCACTTGTGTTTGCCTTGAAATAGATAAGCTAAAT
CGGGAACGTTCCGAGCCCCTGGAACTGTCGGTCATGCCTCGAACGCCGCC
GCTCGTCTTGAGCGATGTCTGCGTGCAAGCACAAACCTAAGATACAGAGA
GCTGAAAAGTGCCGGTCGCAAGTAACAG back to topprotein sequence of jgi.p|Nanoce1779_2|250896 >mRNA_9037-protein ID=mRNA_9037-protein|Name=jgi.p|Nanoce1779_2|250896|organism=Nannochloropsis oceanica|type=polypeptide|length=520bp
MSLHRVHLTHEALFCCVTQALSTEQQEVMSVLLGTWTTHPTTGENIEAEV
QHVVVMSRTDRRKDRVEVGYEQLAEAEQVASALSKATGRETRILGWFHSH
PHITVLPSHVDLQTQAQYQAMDAGFLGLICAVFQDDLKQQRGRVEITAFQ
SVPGGRGREGGRALMMDLDNGFIRIDDEDSTSYVHHSIGLESTGVETGTV
RKGIPIALVPSAGGDGGREGGKGAGGNDGPTTDAMRCVVSLQEVLMQEER
YFYEAAAQANLRNNAISTSTSTSTSTSISTSTSSCSRAGDVHALYNAAVY
GKALSSLLEESAIPLIHTLESVLLNVRREKERVKRAVEKMEEHSRSSVSV
AAGSMEGVMSVKEGGRKGRRGNGMMDVDECQPSASPYSSSVLAVSRPEIL
KKAAEGWQMRRMDGNEDYDVIVRLTREYALLPFGGEGFGQWWLSVGEEKG
RLTRIEGNRNGNHTVTFGFVVARPGERDSRGEKEKETIVQVLGSQDSVTF
WCRRVRPIVSSDANLLPPS* back to topmRNA from alignment at scaffold_30:277705..279989- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9037 ID=mRNA_9037|Name=jgi.p|Nanoce1779_2|250896|organism=Nannochloropsis oceanica|type=mRNA|length=2285bp|location=Sequence derived from alignment at scaffold_30:277705..279989- (Nannochloropsis oceanica)
ATTTGTGTTGCGTCAGACAGGGTGGCATAAGGTTGTGTAGGATGAGGCCT
CGCCGAAGCGACAACACAAGTAGTGTAAAGAGCGAAAGCACAAGACTCAC
GACTCGTCCTCTACCGCTACCCCCCCACAATCTACACAGCACAATCCAAG
GGTTATATCTGAACCACGAGCGAGACGCGCTGCTCCGTTTGTTTGCTTAG
CCTCGTTGGCCCCATTAATAAGAAATTAACCTCCTCACCCGTCCCTCTAC
CCTCAAGCCGATGTCCCTTCACCGTGTGCACCTCACCCATGAGGCCTTGT
TTTGCTGCGTCACTCAAGCCCTGTCGACAGAGCAACAAGAGGTCATGTCC
GTGCTTCTGGGCACCTGGACCACGCACCCCACCACGGGCGAAAACATCGA
AGCGGAGGTCCAGCACGTCGTCGTAATGAGCCGCACGGACCGGCGGAAAG
ACAGGTAAAATCTGCCTGTGCTTCATTCCTCCCTCCCCCCCCCTCCATTC
TTTTCTTCTTCATCTCCCTGAAGCGCTGAGCCATCGAAGCACAAGTACAT
AACATAATCGTTCGCGCCATCTGCTGCCCTTCATTTCCTCCCTTCCTCCT
TCCCTCCCTCCAAGACTCTCACTCATCCTCCATATCACCACCACCACTGT
ACAATGCTCAGGGTGGAAGTTGGTTACGAGCAACTCGCGGAAGCTGAACA
GGTTGCCTCCGCCCTCAGCAAAGCCACGGGCCGAGAGACCCGTATCCTGG
GTTGGTTTCACTCTCACCCACATATCACCGTGTTGCCTAGCCATGTTGAC
TTACAAACACAAGCGCAATACCAGGCAATGGATGCTGGGTTTTTGGGATT
GATTTGTGCGGTGTTTCAAGATGATCTCAAGCAGCAGAGAGGACGGGTAG
AGATTACGGCGTTTCAGTCCGTGCCTGGTGGTCGAGGGAGGGAGGGAGGG
AGGGCCCTAATGATGGATTTGGATAATGGTTTTATTCGTATCGATGACGA
AGATTCGACGTCGTATGTGCATCACAGTATAGGGCTGGAATCGACAGGGG
TGGAGACCGGGACTGTGAGGAAAGGCATTCCGATAGCTTTAGTGCCTTCA
GCAGGAGGAGATGGTGGAAGGGAGGGAGGGAAGGGAGCAGGGGGCAATGA
TGGGCCGACCACGGACGCGATGCGTTGCGTGGTGTCTTTGCAGGAGGTTT
TGATGCAAGAGGAACGTTACTTTTACGAAGCTGCTGCTCAAGCCAACCTA
CGGAACAATGCCATAAGCACCAGCACCAGCACCAGCACCAGCACCAGCAT
CAGCACCAGCACCAGCAGCTGTAGTAGGGCGGGGGACGTCCATGCCTTGT
ACAATGCCGCTGTCTATGGCAAAGCTCTTTCTTCTCTCTTGGAAGAGTCG
GCGATACCCCTGATTCATACCTTGGAAAGCGTCCTCCTTAACGTGCGGCG
GGAGAAAGAGCGAGTGAAGCGAGCCGTGGAGAAAATGGAGGAGCATTCAA
GGAGCAGCGTCAGCGTCGCCGCTGGTAGCATGGAAGGAGTGATGAGCGTG
AAGGAGGGGGGAAGGAAAGGAAGAAGAGGGAATGGGATGATGGACGTGGA
TGAGTGTCAACCTTCTGCTTCTCCCTACAGTTCTAGTGTACTTGCAGTCA
GTCGACCCGAGATCCTAAAAAAGGCAGCGGAGGGTTGGCAAATGCGAAGA
ATGGATGGTAATGAGGACTATGATGTGATAGTAAGATTGACACGAGAATA
TGCTCTCTTACCTTTCGGAGGCGAGGGGTTTGGTCAGTGGTGGCTGTCTG
TAGGGGAGGAAAAGGGAAGGCTGACGCGCATTGAGGGGAATAGGAATGGC
AACCACACGGTGACCTTTGGTTTTGTCGTGGCCAGGCCAGGAGAGCGGGA
CAGTAGAGGGGAAAAGGAGAAAGAGACAATTGTCCAAGTCTTGGGATCAC
AGGACTCGGTGACCTTCTGGTGCCGGCGGGTGCGACCCATTGTGAGCTCC
GATGCCAACCTCCTGCCTCCATCATGAGGGTTGATTATCTTGGTTAAGGT
GCAAGCGAGACATGAGACAATGTGTATAAAAGAATAATGTAAAGAATGGC
ACCGTCAACATTCATGCAGCTTTCACTTGTGTTTGCCTTGAAATAGATAA
GCTAAATCGGGAACGTTCCGAGCCCCTGGAACTGTCGGTCATGCCTCGAA
CGCCGCCGCTCGTCTTGAGCGATGTCTGCGTGCAAGCACAAACCTAAGAT
ACAGAGAGCTGAAAAGTGCCGGTCGCAAGTAACAG back to topCoding sequence (CDS) from alignment at scaffold_30:277705..279989- >mRNA_9037 ID=mRNA_9037|Name=jgi.p|Nanoce1779_2|250896|organism=Nannochloropsis oceanica|type=CDS|length=3120bp|location=Sequence derived from alignment at scaffold_30:277705..279989- (Nannochloropsis oceanica)
GGTGGAAGTTGGTTACGAGCAACTCGCGGAAGCTGAACAGGTTGCCTCCG
CCCTCAGCAAAGCCACGGGCCGAGAGACCCGTATCCTGGGTTGGTTTCAC
TCTCACCCACATATCACCGTGTTGCCTAGCCATGTTGACTTACAAACACA
AGCGCAATACCAGGCAATGGATGCTGGGTTTTTGGGATTGATTTGTGCGG
TGTTTCAAGATGATCTCAAGCAGCAGAGAGGACGGGTAGAGATTACGGCG
TTTCAGTCCGTGCCTGGTGGTCGAGGGAGGGAGGGAGGGAGGGCCCTAAT
GATGGATTTGGATAATGGTTTTATTCGTATCGATGACGAAGATTCGACGT
CGTATGTGCATCACAGTATAGGGCTGGAATCGACAGGGGTGGAGACCGGG
ACTGTGAGGAAAGGCATTCCGATAGCTTTAGTGCCTTCAGCAGGAGGAGA
TGGTGGAAGGGAGGGAGGGAAGGGAGCAGGGGGCAATGATGGGCCGACCA
CGGACGCGATGCGTTGCGTGGTGTCTTTGCAGGAGGTTTTGATGCAAGAG
GAACGTTACTTTTACGAAGCTGCTGCTCAAGCCAACCTACGGAACAATGC
CATAAGCACCAGCACCAGCACCAGCACCAGCACCAGCATCAGCACCAGCA
CCAGCAGCTGTAGTAGGGCGGGGGACGTCCATGCCTTGTACAATGCCGCT
GTCTATGGCAAAGCTCTTTCTTCTCTCTTGGAAGAGTCGGCGATACCCCT
GATTCATACCTTGGAAAGCGTCCTCCTTAACGTGCGGCGGGAGAAAGAGC
GAGTGAAGCGAGCCGTGGAGAAAATGGAGGAGCATTCAAGGAGCAGCGTC
AGCGTCGCCGCTGGTAGCATGGAAGGAGTGATGAGCGTGAAGGAGGGGGG
AAGGAAAGGAAGAAGAGGGAATGGGATGATGGACGTGGATGAGTGTCAAC
CTTCTGCTTCTCCCTACAGTTCTAGTGTACTTGCAGTCAGTCGACCCGAG
ATCCTAAAAAAGGCAGCGGAGGGTTGGCAAATGCGAAGAATGGATGGTAA
TGAGGACTATGATGTGATAGTAAGATTGACACGAGAATATGCTCTCTTAC
CTTTCGGAGGCGAGGGGTTTGGTCAGTGGTGGCTGTCTGTAGGGGAGGAA
AAGGGAAGGCTGACGCGCATTGAGGGGAATAGGAATGGCAACCACACGGT
GACCTTTGGTTTTGTCGTGGCCAGGCCAGGAGAGCGGGACAGTAGAGGGG
AAAAGGAGAAAGAGACAATTGTCCAAGTCTTGGGATCACAGGACTCGGTG
ACCTTCTGGTGCCGGCGGGTGCGACCCATTGTGAGCTCCGATGCCAACCT
CCTGCCTCCATCATGAATGTCCCTTCACCGTGTGCACCTCACCCATGAGG
CCTTGTTTTGCTGCGTCACTCAAGCCCTGTCGACAGAGCAACAAGAGGTC
ATGTCCGTGCTTCTGGGCACCTGGACCACGCACCCCACCACGGGCGAAAA
CATCGAAGCGGAGGTCCAGCACGTCGTCGTAATGAGCCGCACGGACCGGC
GGAAAGACAGGGTGGAAGTTGGTTACGAGCAACTCGCGGAAGCTGAACAG
GTTGCCTCCGCCCTCAGCAAAGCCACGGGCCGAGAGACCCGTATCCTGGG
TTGGTTTCACTCTCACCCACATATCACCGTGTTGCCTAGCCATGTTGACT
TACAAACACAAGCGCAATACCAGGCAATGGATGCTGGGTTTTTGGGATTG
ATTTGTGCGGTGTTTCAAGATGATCTCAAGCAGCAGAGAGGACGGGTAGA
GATTACGGCGTTTCAGTCCGTGCCTGGTGGTCGAGGGAGGGAGGGAGGGA
GGGCCCTAATGATGGATTTGGATAATGGTTTTATTCGTATCGATGACGAA
GATTCGACGTCGTATGTGCATCACAGTATAGGGCTGGAATCGACAGGGGT
GGAGACCGGGACTGTGAGGAAAGGCATTCCGATAGCTTTAGTGCCTTCAG
CAGGAGGAGATGGTGGAAGGGAGGGAGGGAAGGGAGCAGGGGGCAATGAT
GGGCCGACCACGGACGCGATGCGTTGCGTGGTGTCTTTGCAGGAGGTTTT
GATGCAAGAGGAACGTTACTTTTACGAAGCTGCTGCTCAAGCCAACCTAC
GGAACAATGCCATAAGCACCAGCACCAGCACCAGCACCAGCACCAGCATC
AGCACCAGCACCAGCAGCTGTAGTAGGGCGGGGGACGTCCATGCCTTGTA
CAATGCCGCTGTCTATGGCAAAGCTCTTTCTTCTCTCTTGGAAGAGTCGG
CGATACCCCTGATTCATACCTTGGAAAGCGTCCTCCTTAACGTGCGGCGG
GAGAAAGAGCGAGTGAAGCGAGCCGTGGAGAAAATGGAGGAGCATTCAAG
GAGCAGCGTCAGCGTCGCCGCTGGTAGCATGGAAGGAGTGATGAGCGTGA
AGGAGGGGGGAAGGAAAGGAAGAAGAGGGAATGGGATGATGGACGTGGAT
GAGTGTCAACCTTCTGCTTCTCCCTACAGTTCTAGTGTACTTGCAGTCAG
TCGACCCGAGATCCTAAAAAAGGCAGCGGAGGGTTGGCAAATGCGAAGAA
TGGATGGTAATGAGGACTATGATGTGATAGTAAGATTGACACGAGAATAT
GCTCTCTTACCTTTCGGAGGCGAGGGGTTTGGTCAGTGGTGGCTGTCTGT
AGGGGAGGAAAAGGGAAGGCTGACGCGCATTGAGGGGAATAGGAATGGCA
ACCACACGGTGACCTTTGGTTTTGTCGTGGCCAGGCCAGGAGAGCGGGAC
AGTAGAGGGGAAAAGGAGAAAGAGACAATTGTCCAAGTCTTGGGATCACA
GGACTCGGTGACCTTCTGGTGCCGGCGGGTGCGACCCATTGTGAGCTCCG
ATGCCAACCTCCTGCCTCCATCATGAATGTCCCTTCACCGTGTGCACCTC
ACCCATGAGGCCTTGTTTTGCTGCGTCACTCAAGCCCTGTCGACAGAGCA
ACAAGAGGTCATGTCCGTGCTTCTGGGCACCTGGACCACGCACCCCACCA
CGGGCGAAAACATCGAAGCGGAGGTCCAGCACGTCGTCGTAATGAGCCGC
ACGGACCGGCGGAAAGACAG back to top
|