jgi.p|Nanoce1779_2|261906, mRNA_9794 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|261906
Unique Name	mRNA_9794
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1919
Alignment location	scaffold_32:86602..88520 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	261992
Track	FilteredModels2
ProteinId	261906

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_32	supercontig	scaffold_32:86602..88520 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|261906	gene_9794	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|261906	mRNA_9794-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9794	CDS_9794	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_32:86602..88520+
coding sequence from alignment at scaffold_32:86602..88520+

mRNA sequence

>mRNA_9794 ID=mRNA_9794|Name=jgi.p|Nanoce1779_2|261906|organism=Nannochloropsis oceanica|type=mRNA|length=1919bp
CTAAGACAGGGTGGTGAAATGACGAAAAGGCACGCGAATATGAGCAAGCC
TGCCTTCATGCTGCTGATCCTTATTACAAGGTGAGAAATACATGTTCAAA
CAAACGACCCGTCATAGTTTTATTTTCTAGGTTCACAATAATAATCGCTT
TTGCAGTCTATTGATAAGCCTTTGGGTTTCACAGATACCCACCTTGGCGT
CCCCCCCATCATATCCTTGGGACCATATGTTGTTACTCCAAGTGGGTAAT
AAATATAATTTGACAGCAAAGGATTTCTCCGAATGGCAACTATTGACTGA
TCAAAACAAGAGCAAGGTATTCCGTCGACAGAATATCATCTTAAAGATTT
CAGATGCTCTGTTTCCGCATACTCAATATGAGATAGGGCGGACTGAATGC
ATCGTGCTCAATTATATTGAGGCCAAGATGCCTGAAACTCATCACTTTCC
CCGGTGCTTAATGTCGTCCACAGTTTGGATTGATGGAGCCAAAAGATATG
CAACCGCAATCCCCTTCTTAAAAGGCGAGCCTTTTGAGGATGCAATAATA
AAATCCAATGCAACACAGATTTACAGTATTGTTGATTCATTGCTATCAGC
GTTAGAGAGGATGAATGAGATGGGTATTACTCATAGGGATATCGATACAA
GAAATGTTCTCGTTGACAATCTGGAATCAGTGAAAATCTTAGACTTTGCA
TTAGCGACGTCGCCGGTCGTCCCAGCAGAAGGGCAGACAGTAATGAGTTT
GGGGCGTCATAAGCCGCCTGACGTTGATCTTTGCGGATTTGATGATCTCT
TTTCTGCTGGCGTCATGTTAAGACAAGCACTTGTCAAGCGGCGCGGTAAT
GTTCCCAAAGGGATACATAATATTGTGTACCACATTACAAGAGACAAATG
CATTGATAGGATTCGTGATTTCGCAAGATTAAGGGCTATACTCTATCAGT
ATGGCAAAGTATCGGATACCGTCGCACCGTGCTATAATGCCAATGCACAT
GTTATGAACACCACAGTCGGTCAAGAGGAAGAGTGCCTACAGGTAACCGG
CTATCAGGTATTCAAAGCATGCAAAAATAGCTACGTGACATCGACAAACG
ATTATTTGGATCTAAGACTTCGAGCGTTTGATGGTATCGATTTAAACGGT
ACGCGATTGACGGACATGGGTGGAAACTCCGGATTTTACAGTCTTTGGGC
TCTCCAACACGGCTCTTTGTCGAGTGTAATTATTGAACAAGATATCTACG
CTATCTCAGCTGGACAGATGGTCGCTGACTTTCTCTCGCTGGACCTGAAG
TATACCTCTTTCCTAAATATCCAAGAGGCTGACATCGTTATGGCCTTTGC
CATCGTACACTGGCTTATGTCCTGCTCACAATCGTTCGGAAATTTAGCTG
ATGTGGTGTATTTCTTAAGAAAGCTTACACGCTCCACGTTGCTGGTCGAA
TGGATCGACCCTTTAGATGACGCCATCCAAACCTTTGGGCACGTCGATCC
CTCCTTCTCTTATACGCGAATCAATTTTGAAATGTTGTTGAAGCAATACT
TCTCCTCATTTCGATTTGTAGTGAAATCACGAGACCACCGGTATATTTAT
CAGGCCAAGGTTTGATTTCCCAAGTTGCGTGAACGGCCGTGCTATTCATG
ATGTGGATGCGTACACAAATCGAGCCATTTGTCGCACCCCCCAAGAAAGA
GGATTACGAATGGCTGTCGATAAGCTACCGGCCAGAACTGCAGAGACAAA
TTGATGAAACAGATAGATTGCTCAATATCACACCATCCATCAGACCAAAA
TCTACCATTGAAATCATTTAAGGAAACAATTTTAAGCAATCCGCGTATAG
ACCGAGCCATAGGCTTCAATCAAAAAAATAATTCTAAATATACACGGTGG
CAGAGCATTTACATAAAAT

protein sequence of jgi.p|Nanoce1779_2|261906

>mRNA_9794-protein ID=mRNA_9794-protein|Name=jgi.p|Nanoce1779_2|261906|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MLLLQVGNKYNLTAKDFSEWQLLTDQNKSKVFRRQNIILKISDALFPHTQ
YEIGRTECIVLNYIEAKMPETHHFPRCLMSSTVWIDGAKRYATAIPFLKG
EPFEDAIIKSNATQIYSIVDSLLSALERMNEMGITHRDIDTRNVLVDNLE
SVKILDFALATSPVVPAEGQTVMSLGRHKPPDVDLCGFDDLFSAGVMLRQ
ALVKRRGNVPKGIHNIVYHITRDKCIDRIRDFARLRAILYQYGKVSDTVA
PCYNANAHVMNTTVGQEEECLQVTGYQVFKACKNSYVTSTNDYLDLRLRA
FDGIDLNGTRLTDMGGNSGFYSLWALQHGSLSSVIIEQDIYAISAGQMVA
DFLSLDLKYTSFLNIQEADIVMAFAIVHWLMSCSQSFGNLADVVYFLRKL
TRSTLLVEWIDPLDDAIQTFGHVDPSFSYTRINFEMLLKQYFSSFRFVVK
SRDHRYIYQAKV*

mRNA from alignment at scaffold_32:86602..88520+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9794 ID=mRNA_9794|Name=jgi.p|Nanoce1779_2|261906|organism=Nannochloropsis oceanica|type=mRNA|length=1919bp|location=Sequence derived from alignment at scaffold_32:86602..88520+ (Nannochloropsis oceanica)
CTAAGACAGGGTGGTGAAATGACGAAAAGGCACGCGAATATGAGCAAGCC
TGCCTTCATGCTGCTGATCCTTATTACAAGGTGAGAAATACATGTTCAAA
CAAACGACCCGTCATAGTTTTATTTTCTAGGTTCACAATAATAATCGCTT
TTGCAGTCTATTGATAAGCCTTTGGGTTTCACAGATACCCACCTTGGCGT
CCCCCCCATCATATCCTTGGGACCATATGTTGTTACTCCAAGTGGGTAAT
AAATATAATTTGACAGCAAAGGATTTCTCCGAATGGCAACTATTGACTGA
TCAAAACAAGAGCAAGGTATTCCGTCGACAGAATATCATCTTAAAGATTT
CAGATGCTCTGTTTCCGCATACTCAATATGAGATAGGGCGGACTGAATGC
ATCGTGCTCAATTATATTGAGGCCAAGATGCCTGAAACTCATCACTTTCC
CCGGTGCTTAATGTCGTCCACAGTTTGGATTGATGGAGCCAAAAGATATG
CAACCGCAATCCCCTTCTTAAAAGGCGAGCCTTTTGAGGATGCAATAATA
AAATCCAATGCAACACAGATTTACAGTATTGTTGATTCATTGCTATCAGC
GTTAGAGAGGATGAATGAGATGGGTATTACTCATAGGGATATCGATACAA
GAAATGTTCTCGTTGACAATCTGGAATCAGTGAAAATCTTAGACTTTGCA
TTAGCGACGTCGCCGGTCGTCCCAGCAGAAGGGCAGACAGTAATGAGTTT
GGGGCGTCATAAGCCGCCTGACGTTGATCTTTGCGGATTTGATGATCTCT
TTTCTGCTGGCGTCATGTTAAGACAAGCACTTGTCAAGCGGCGCGGTAAT
GTTCCCAAAGGGATACATAATATTGTGTACCACATTACAAGAGACAAATG
CATTGATAGGATTCGTGATTTCGCAAGATTAAGGGCTATACTCTATCAGT
ATGGCAAAGTATCGGATACCGTCGCACCGTGCTATAATGCCAATGCACAT
GTTATGAACACCACAGTCGGTCAAGAGGAAGAGTGCCTACAGGTAACCGG
CTATCAGGTATTCAAAGCATGCAAAAATAGCTACGTGACATCGACAAACG
ATTATTTGGATCTAAGACTTCGAGCGTTTGATGGTATCGATTTAAACGGT
ACGCGATTGACGGACATGGGTGGAAACTCCGGATTTTACAGTCTTTGGGC
TCTCCAACACGGCTCTTTGTCGAGTGTAATTATTGAACAAGATATCTACG
CTATCTCAGCTGGACAGATGGTCGCTGACTTTCTCTCGCTGGACCTGAAG
TATACCTCTTTCCTAAATATCCAAGAGGCTGACATCGTTATGGCCTTTGC
CATCGTACACTGGCTTATGTCCTGCTCACAATCGTTCGGAAATTTAGCTG
ATGTGGTGTATTTCTTAAGAAAGCTTACACGCTCCACGTTGCTGGTCGAA
TGGATCGACCCTTTAGATGACGCCATCCAAACCTTTGGGCACGTCGATCC
CTCCTTCTCTTATACGCGAATCAATTTTGAAATGTTGTTGAAGCAATACT
TCTCCTCATTTCGATTTGTAGTGAAATCACGAGACCACCGGTATATTTAT
CAGGCCAAGGTTTGATTTCCCAAGTTGCGTGAACGGCCGTGCTATTCATG
ATGTGGATGCGTACACAAATCGAGCCATTTGTCGCACCCCCCAAGAAAGA
GGATTACGAATGGCTGTCGATAAGCTACCGGCCAGAACTGCAGAGACAAA
TTGATGAAACAGATAGATTGCTCAATATCACACCATCCATCAGACCAAAA
TCTACCATTGAAATCATTTAAGGAAACAATTTTAAGCAATCCGCGTATAG
ACCGAGCCATAGGCTTCAATCAAAAAAATAATTCTAAATATACACGGTGG
CAGAGCATTTACATAAAAT

Coding sequence (CDS) from alignment at scaffold_32:86602..88520+

>mRNA_9794 ID=mRNA_9794|Name=jgi.p|Nanoce1779_2|261906|organism=Nannochloropsis oceanica|type=CDS|length=1389bp|location=Sequence derived from alignment at scaffold_32:86602..88520+ (Nannochloropsis oceanica)
ATGTTGTTACTCCAAGTGGGTAATAAATATAATTTGACAGCAAAGGATTT
CTCCGAATGGCAACTATTGACTGATCAAAACAAGAGCAAGGTATTCCGTC
GACAGAATATCATCTTAAAGATTTCAGATGCTCTGTTTCCGCATACTCAA
TATGAGATAGGGCGGACTGAATGCATCGTGCTCAATTATATTGAGGCCAA
GATGCCTGAAACTCATCACTTTCCCCGGTGCTTAATGTCGTCCACAGTTT
GGATTGATGGAGCCAAAAGATATGCAACCGCAATCCCCTTCTTAAAAGGC
GAGCCTTTTGAGGATGCAATAATAAAATCCAATGCAACACAGATTTACAG
TATTGTTGATTCATTGCTATCAGCGTTAGAGAGGATGAATGAGATGGGTA
TTACTCATAGGGATATCGATACAAGAAATGTTCTCGTTGACAATCTGGAA
TCAGTGAAAATCTTAGACTTTGCATTAGCGACGTCGCCGGTCGTCCCAGC
AGAAGGGCAGACAGTAATGAGTTTGGGGCGTCATAAGCCGCCTGACGTTG
ATCTTTGCGGATTTGATGATCTCTTTTCTGCTGGCGTCATGTTAAGACAA
GCACTTGTCAAGCGGCGCGGTAATGTTCCCAAAGGGATACATAATATTGT
GTACCACATTACAAGAGACAAATGCATTGATAGGATTCGTGATTTCGCAA
GATTAAGGGCTATACTCTATCAGTATGGCAAAGTATCGGATACCGTCGCA
CCGTGCTATAATGCCAATGCACATGTTATGAACACCACAGTCGGTCAAGA
GGAAGAGTGCCTACAGGTAACCGGCTATCAGGTATTCAAAGCATGCAAAA
ATAGCTACGTGACATCGACAAACGATTATTTGGATCTAAGACTTCGAGCG
TTTGATGGTATCGATTTAAACGGTACGCGATTGACGGACATGGGTGGAAA
CTCCGGATTTTACAGTCTTTGGGCTCTCCAACACGGCTCTTTGTCGAGTG
TAATTATTGAACAAGATATCTACGCTATCTCAGCTGGACAGATGGTCGCT
GACTTTCTCTCGCTGGACCTGAAGTATACCTCTTTCCTAAATATCCAAGA
GGCTGACATCGTTATGGCCTTTGCCATCGTACACTGGCTTATGTCCTGCT
CACAATCGTTCGGAAATTTAGCTGATGTGGTGTATTTCTTAAGAAAGCTT
ACACGCTCCACGTTGCTGGTCGAATGGATCGACCCTTTAGATGACGCCAT
CCAAACCTTTGGGCACGTCGATCCCTCCTTCTCTTATACGCGAATCAATT
TTGAAATGTTGTTGAAGCAATACTTCTCCTCATTTCGATTTGTAGTGAAA
TCACGAGACCACCGGTATATTTATCAGGCCAAGGTTTGA

Synonyms

Publications