jgi.p|Nanoce1779_2|605264, mRNA_9629 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|605264
Unique Name	mRNA_9629
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1840
Alignment location	scaffold_31:132376..134215 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	605350
Track	FilteredModels2
ProteinId	605264

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_31	supercontig	scaffold_31:132376..134215 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605264	gene_9629	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605264	mRNA_9629-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9629	CDS_9629	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_31:132376..134215+
coding sequence from alignment at scaffold_31:132376..134215+

mRNA sequence

>mRNA_9629 ID=mRNA_9629|Name=jgi.p|Nanoce1779_2|605264|organism=Nannochloropsis oceanica|type=mRNA|length=1840bp
GAAATGTAGGAGGAATTTGCCCTGTCCTCGCGCGTAAAATTCCAGTGTGA
TATGGAGAAGCAGAAACAGACACACAGAGCAGACCTTCGATTTCTCTCTT
CCAACACGTGCTATCTCTGCATGCTTGGCAAACAACAACTTGTTCTGCAA
ACAACAACTTGTTTTCCGGACGTCCGAACACGTCCCGGACGTTCCTGTCT
CCTTGTCCATAGGTCTTTATTTTGGGGGGACTATGTCTCTTCCCATGTTA
CAAACCACAAAATGTGCTGCATACAAGGAAGTCGTGTACTGTTTCAAAAC
TAGGGAAGTGTGTCGCCTAGGTAATGATAGGGTGTATCTGTGGCGCAGGC
ATGTACCATGAGCGTATTCAGATAATGCGTTTGTGCACGTGACGCAGGCA
GGTACCACTCTTCCCTTCAACTCCAGGAGAGGAGCACAGGAGCGCGAGGA
AGCGAGCGATAGATGCCGCTGAAAACAAAGTCCACAAGTTGTCATGGCAA
TTCTGACGATGTTTGTTGGAAAGGCAGGGGATACATGGTTCGTATTTGTC
CTTCCTTTCTTCCTTCGTCTTTGCCAGCCTCTTCTCTTCCTCGAGCCCTT
TCTCCTCCTCTTCGACTTCCAGCCTATCCTCTCCGAGGTAGAACTCTGAA
TGGGATAGCATGTTTTTCTTTCACCCCTCCTCTTTCAAAAAGACGTGAGT
TAGGACCTGGGACTGTAAAGCACACAGCAAGCACACGACGAGGAGGCTTG
CTGCAAGACAGCTTGAACGTGGTGAGCACGTTTTGTCCCCGTCGTATTTT
TCCCTCCTTGTTTCACCAAGGTCATGAAAAAGGATTTGGTGCTTCAAGTC
TGTGGAAACAGCGCACTCTTCGGTGGAACCTATCGTGGCCCTGTCGACTT
CCAAGCGAGATCGCACTCGCATTGTTCTACGACGCCGGCAGTTGGGTGGG
CAATGTGTTGTATCGTTTTGATTTGTTCTGGTTTTCAATATTGATTTCGG
TCTCGTCGCTATGATAGAAGTAGATGCCATCGTGCCCCGGTGGCAAGGCT
CGTGATGGTAGATTAAAACCCCCAAAAAAGAGCAAAATACGTACATAACT
TTCTGTGTAGTCCGTCATGAGACGAAGGGGAGGACGTCTTTGTCTTTGAT
CTCTACTTTTCGCCAACAATTTGTGAGAGGATAAAGGGGGGGAGATCCAG
ATTAAAAATCTCTGCGCATTGGGCAAAGGATTTACGAGCAGCCTCGATCG
GTTTGTATTTCTCTAGGCAGGGAGGAATGGAGGCATTATTATTGTATTGT
CCTGTCATTCCCTCTTCTACATAGAACGAACGTGGGCAACATTCGATAGA
GAACAAGTGCATGACATTCTGATCGCCCTTCCATGGACGTCCTTTTACTT
CATGGCCTGTGGTCCCACGTCAGATGTGGAGATGTCGCTTGCTTATCTTG
CTTCCCAGTTGTAACGTCAGGGCTGAGCAAGGGAAGGGGAGAATATCGTC
CGAGGTAGAAGTGGTGCTTAAATGGAAAATGACAAAAATACTTTTCAAGC
ATGACGTTTGGATATGTGATTGGGTGGAGCCTCCACCGTGGAGGTGCACT
CTGTAAAAATATGTCAAGGCAAGCCAAGGAAAGATGACGTTGTGCAAGCG
GGAGCATCGAGATGGCAAAGATATTGTCCGAGCAGGGATTATTATTTATT
ATCATCTCTCGTTAACAGGTGGGCAGGCTTTCTTTGCAGGAAGACTTGAG
GTGGGTGTGGAGGGCTGGTAGTATCGTGATTGTATGGGTGTGGTATGCAT
CGTACGATAAAAAGGGGGGAGAGAACGGGGTGTGGCCGTG

protein sequence of jgi.p|Nanoce1779_2|605264

>mRNA_9629-protein ID=mRNA_9629-protein|Name=jgi.p|Nanoce1779_2|605264|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MPLKTKSTSCHGNSDDVCWKGRGYMVRICPSFLPSSLPASSLPRALSPPL
RLPAYPLRGRTLNGIACFSFTPPLSKRRELGPGTVKHTASTRRGGLLQDS
LNVVSTFCPRRIFPSLFHQGHEKGFGASSLWKQRTLRWNLSWPCRLPSEI
ALALFYDAGSWVGNVLYRFDLFWFSILISVSSL*

mRNA from alignment at scaffold_31:132376..134215+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9629 ID=mRNA_9629|Name=jgi.p|Nanoce1779_2|605264|organism=Nannochloropsis oceanica|type=mRNA|length=1840bp|location=Sequence derived from alignment at scaffold_31:132376..134215+ (Nannochloropsis oceanica)
GAAATGTAGGAGGAATTTGCCCTGTCCTCGCGCGTAAAATTCCAGTGTGA
TATGGAGAAGCAGAAACAGACACACAGAGCAGACCTTCGATTTCTCTCTT
CCAACACGTGCTATCTCTGCATGCTTGGCAAACAACAACTTGTTCTGCAA
ACAACAACTTGTTTTCCGGACGTCCGAACACGTCCCGGACGTTCCTGTCT
CCTTGTCCATAGGTCTTTATTTTGGGGGGACTATGTCTCTTCCCATGTTA
CAAACCACAAAATGTGCTGCATACAAGGAAGTCGTGTACTGTTTCAAAAC
TAGGGAAGTGTGTCGCCTAGGTAATGATAGGGTGTATCTGTGGCGCAGGC
ATGTACCATGAGCGTATTCAGATAATGCGTTTGTGCACGTGACGCAGGCA
GGTACCACTCTTCCCTTCAACTCCAGGAGAGGAGCACAGGAGCGCGAGGA
AGCGAGCGATAGATGCCGCTGAAAACAAAGTCCACAAGTTGTCATGGCAA
TTCTGACGATGTTTGTTGGAAAGGCAGGGGATACATGGTTCGTATTTGTC
CTTCCTTTCTTCCTTCGTCTTTGCCAGCCTCTTCTCTTCCTCGAGCCCTT
TCTCCTCCTCTTCGACTTCCAGCCTATCCTCTCCGAGGTAGAACTCTGAA
TGGGATAGCATGTTTTTCTTTCACCCCTCCTCTTTCAAAAAGACGTGAGT
TAGGACCTGGGACTGTAAAGCACACAGCAAGCACACGACGAGGAGGCTTG
CTGCAAGACAGCTTGAACGTGGTGAGCACGTTTTGTCCCCGTCGTATTTT
TCCCTCCTTGTTTCACCAAGGTCATGAAAAAGGATTTGGTGCTTCAAGTC
TGTGGAAACAGCGCACTCTTCGGTGGAACCTATCGTGGCCCTGTCGACTT
CCAAGCGAGATCGCACTCGCATTGTTCTACGACGCCGGCAGTTGGGTGGG
CAATGTGTTGTATCGTTTTGATTTGTTCTGGTTTTCAATATTGATTTCGG
TCTCGTCGCTATGATAGAAGTAGATGCCATCGTGCCCCGGTGGCAAGGCT
CGTGATGGTAGATTAAAACCCCCAAAAAAGAGCAAAATACGTACATAACT
TTCTGTGTAGTCCGTCATGAGACGAAGGGGAGGACGTCTTTGTCTTTGAT
CTCTACTTTTCGCCAACAATTTGTGAGAGGATAAAGGGGGGGAGATCCAG
ATTAAAAATCTCTGCGCATTGGGCAAAGGATTTACGAGCAGCCTCGATCG
GTTTGTATTTCTCTAGGCAGGGAGGAATGGAGGCATTATTATTGTATTGT
CCTGTCATTCCCTCTTCTACATAGAACGAACGTGGGCAACATTCGATAGA
GAACAAGTGCATGACATTCTGATCGCCCTTCCATGGACGTCCTTTTACTT
CATGGCCTGTGGTCCCACGTCAGATGTGGAGATGTCGCTTGCTTATCTTG
CTTCCCAGTTGTAACGTCAGGGCTGAGCAAGGGAAGGGGAGAATATCGTC
CGAGGTAGAAGTGGTGCTTAAATGGAAAATGACAAAAATACTTTTCAAGC
ATGACGTTTGGATATGTGATTGGGTGGAGCCTCCACCGTGGAGGTGCACT
CTGTAAAAATATGTCAAGGCAAGCCAAGGAAAGATGACGTTGTGCAAGCG
GGAGCATCGAGATGGCAAAGATATTGTCCGAGCAGGGATTATTATTTATT
ATCATCTCTCGTTAACAGGTGGGCAGGCTTTCTTTGCAGGAAGACTTGAG
GTGGGTGTGGAGGGCTGGTAGTATCGTGATTGTATGGGTGTGGTATGCAT
CGTACGATAAAAAGGGGGGAGAGAACGGGGTGTGGCCGTG

Coding sequence (CDS) from alignment at scaffold_31:132376..134215+

>mRNA_9629 ID=mRNA_9629|Name=jgi.p|Nanoce1779_2|605264|organism=Nannochloropsis oceanica|type=CDS|length=552bp|location=Sequence derived from alignment at scaffold_31:132376..134215+ (Nannochloropsis oceanica)
ATGCCGCTGAAAACAAAGTCCACAAGTTGTCATGGCAATTCTGACGATGT
TTGTTGGAAAGGCAGGGGATACATGGTTCGTATTTGTCCTTCCTTTCTTC
CTTCGTCTTTGCCAGCCTCTTCTCTTCCTCGAGCCCTTTCTCCTCCTCTT
CGACTTCCAGCCTATCCTCTCCGAGGTAGAACTCTGAATGGGATAGCATG
TTTTTCTTTCACCCCTCCTCTTTCAAAAAGACGTGAGTTAGGACCTGGGA
CTGTAAAGCACACAGCAAGCACACGACGAGGAGGCTTGCTGCAAGACAGC
TTGAACGTGGTGAGCACGTTTTGTCCCCGTCGTATTTTTCCCTCCTTGTT
TCACCAAGGTCATGAAAAAGGATTTGGTGCTTCAAGTCTGTGGAAACAGC
GCACTCTTCGGTGGAACCTATCGTGGCCCTGTCGACTTCCAAGCGAGATC
GCACTCGCATTGTTCTACGACGCCGGCAGTTGGGTGGGCAATGTGTTGTA
TCGTTTTGATTTGTTCTGGTTTTCAATATTGATTTCGGTCTCGTCGCTAT
GA

Synonyms

Publications