jgi.p|Nanoce1779_2|658597, mRNA_9784 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|658597
Unique Name	mRNA_9784
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2662
Alignment location	scaffold_32:45424..48085 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	658683
Track	FilteredModels2
ProteinId	658597

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_32	supercontig	scaffold_32:45424..48085 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|658597	gene_9784	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|658597	mRNA_9784-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9784	CDS_9784	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_32:45424..48085+
coding sequence from alignment at scaffold_32:45424..48085+

mRNA sequence

>mRNA_9784 ID=mRNA_9784|Name=jgi.p|Nanoce1779_2|658597|organism=Nannochloropsis oceanica|type=mRNA|length=2662bp
AATAGAATGGAAGAGTGACGAAGAGCTATGAAGGCTCTGAATCTTTCTGA
TTCATCATCCCCATATGGTAGGGAATGGTGATTTTGCGGCTCGATCATGA
GATCTTAACCTTAACTTGATGATCTTTGCTTTTGGATAAGACTTGCGATT
GATGATTCCGAGAAGGTCTTGCGATTGATTACTACATGCCCACCACACAT
ACACACACTTCGATTCAAGTTCGAACTCGGGCATCCAAGTCTCGGAATCA
CACTATCAAAGTCGAACTAGTTCAAAAATTAAACTTGCCAGGCTATCGTC
ATTTGCCTTCATCATGTGGCGATCCAAATTTATCATGGCATATGCCTTTG
TCTTACATTTCTTCGCCTTTCTTCTCATTGGGAAAATGACTCATTTGGAA
GAGGGAGAACTCCATCTACCGGCCAAAATTCTTGAAAGGACTCAAACGCC
CAATTTGGCTGTAGGACAAGATAAAAAAGTAATTGCTGTCTACTTCCCTC
AGTTCCACGAGATTGAGGAGAACAACAAATTTTGGGGGAAAGGCTTCACA
GATTTCTCCAATGTCGCAAAGGTTCACCAAAATCGGTACGGTCAGGCAAT
TATTAGGCCTGCCGAACGAATGGGCTTCTATGACTTGGTGTCTCCCAGCC
AACGGCGTTTCCAGGGGGAACTAGCAAGAAAGTATAATATTCATGGATTT
GCTATATACCATTACTGGTTCGGCACCAAAGCTATAATGACGAAGCCATT
GGAGTTGATGCTCTTAGACGGCTACCCTGACATTCCCTTCTGTTTAACTT
GGGCAAACGAGCCTTGGACACGACGGTGGAATGGAAATGACGGATCAGAG
GTTCTCCTCAATCAGACTTACGACCGAGAAACTTGGGAGCCTCACTTTGA
TTGGCTCTTGCCTTATCTGAAGCATAAGAATTATTTGAAATACAAGGGCC
TACCCGTCATCCTCATTTACAGAGCGGTCGACATTCCCGATTTGGAACAA
ATGATAAGTCTGTGGAGAATGTCGGCGAGGAATTCAAATTTAACGGGCCT
CCACGTGATACAAATAAATGGAGTAGGCTGGAATGGATCTTCTTCTTTAA
AATTGCAGCCAGGAATGGATTCTCTCGTTGAGGGTTTCCCAAGCTACATG
TCGACGTCAGGTTTCACTATGAACAACCTTGTGAGCACCCAGAAAAAGGC
AGACAGCTATTTCTATGGCGTTTCCGCCGCCTTTGATAATTCGCCTAGAT
ACCCCGACCCTACCGATGGTGCCACAATGTATCCGTTTCATCCGTCACAT
TTGTATTTTTGGCTACGTCAAAATTTGGCGAGGACGGAGCCCGGTGGATT
TGTGTTTTTAAATGCATGGAATGACTGGGGGCAGGGAGCTGCAATTGAGC
CCAGCATCCAATGGGGAAGGCGATGGCTTGAAGCCGTCCAAAAAGCTGTC
TTTGACGAACAGCGTGGCCATGTGTCAAAAATCATGTCTAATGGTTATGT
GAGCTCTGTGCCTTTGGATGAGAACCCTGGTATGCCTGTGAGCCAAAGGG
CGGGACAAGATAGAGTGTGCATAATAGTCCGCACCTATAAAGGCCACTCA
ACAGGAATCTACAATATTCATCAAACTCTCAACACGTTGCTTGCATTGAA
CCACAAAAATTGGAGAGCTTTTATCGTGAATACAGATGTTATTCCTTTTG
AGGACCTCCACCATATCACGGATCAATATGAACACGGAGGTAAAATTGAA
ATTTCACCGCTAACGGCCACTAAAAGCTTTACAGAGGATCCTAATTCAGC
CTATGATATAACGGATAGAGCCATAGAGCACCATTGTGGTTCTAGCAAGG
ATTTCAAATGGCTACTCGTCACAAATGGAGACAACTGGTACACTCCCGAT
GCTTTGGATTTCCTTCCCAATGATGTCGATCTTGTTTTGATGAATTTCTA
TTCACGATATTCCATCTGGGGTGCGATTTCATCGACAAATACTCCTCATG
ATCAGGCGTGCTGTGTAAGACTTCAAAATTATCGATGCATGGTAGCAGAT
GTCAAAATGGGCTACATAGATCTTGGTGCGGTGATATTTGATTATCAAAA
GTATCGGAAAGGGTACATCTCTTTTACAACATTTAATAAAGAGTCTGATA
CTCAATGTGGTCAGTTTGGCGGCTGCCACGATGGCCTCCTGATCGAGTAT
TTGATAGAAAATAAATGGTCTTATCGTGGTCATCCAGTTGATGTATGCAC
CATGCATCACAATTCAAACCCCAAAAGCTGCGAGCTTGTTGGTGGGACAT
GGTTCGACACAATGGATAGAAGTGCAATGGGCTGCTACTATGGGAATGTA
CTACCCATGCCGCTGGAATCAGTGAACTATCAGGCATATATGGCAGCTCA
TGCAGCATGCGTATGTTAATTTATACCTCCACAGACACAGGTCCCTGGGA
CAGGGAATGCTCGAAATACCAAACTCTGAGTTCACTATTGAGCTCGAGTT
CAGAGGGACCGAGTTCGATTTTTTTTCAAAAAACGATCATCACAAATGAG
CATACTCCAGCGTATTCAAGGGCCACAGAGGGAGCAGAACGCGTGTGATG
GATCGGAAATGGCAAAATAATTAAAAAGTGCATGGCTGGGACCCAAGAAC
GAGGTGGAAAGC

protein sequence of jgi.p|Nanoce1779_2|658597

>mRNA_9784-protein ID=mRNA_9784-protein|Name=jgi.p|Nanoce1779_2|658597|organism=Nannochloropsis oceanica|type=polypeptide|length=702bp
MWRSKFIMAYAFVLHFFAFLLIGKMTHLEEGELHLPAKILERTQTPNLAV
GQDKKVIAVYFPQFHEIEENNKFWGKGFTDFSNVAKVHQNRYGQAIIRPA
ERMGFYDLVSPSQRRFQGELARKYNIHGFAIYHYWFGTKAIMTKPLELML
LDGYPDIPFCLTWANEPWTRRWNGNDGSEVLLNQTYDRETWEPHFDWLLP
YLKHKNYLKYKGLPVILIYRAVDIPDLEQMISLWRMSARNSNLTGLHVIQ
INGVGWNGSSSLKLQPGMDSLVEGFPSYMSTSGFTMNNLVSTQKKADSYF
YGVSAAFDNSPRYPDPTDGATMYPFHPSHLYFWLRQNLARTEPGGFVFLN
AWNDWGQGAAIEPSIQWGRRWLEAVQKAVFDEQRGHVSKIMSNGYVSSVP
LDENPGMPVSQRAGQDRVCIIVRTYKGHSTGIYNIHQTLNTLLALNHKNW
RAFIVNTDVIPFEDLHHITDQYEHGGKIEISPLTATKSFTEDPNSAYDIT
DRAIEHHCGSSKDFKWLLVTNGDNWYTPDALDFLPNDVDLVLMNFYSRYS
IWGAISSTNTPHDQACCVRLQNYRCMVADVKMGYIDLGAVIFDYQKYRKG
YISFTTFNKESDTQCGQFGGCHDGLLIEYLIENKWSYRGHPVDVCTMHHN
SNPKSCELVGGTWFDTMDRSAMGCYYGNVLPMPLESVNYQAYMAAHAACV
C*

mRNA from alignment at scaffold_32:45424..48085+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9784 ID=mRNA_9784|Name=jgi.p|Nanoce1779_2|658597|organism=Nannochloropsis oceanica|type=mRNA|length=2662bp|location=Sequence derived from alignment at scaffold_32:45424..48085+ (Nannochloropsis oceanica)
AATAGAATGGAAGAGTGACGAAGAGCTATGAAGGCTCTGAATCTTTCTGA
TTCATCATCCCCATATGGTAGGGAATGGTGATTTTGCGGCTCGATCATGA
GATCTTAACCTTAACTTGATGATCTTTGCTTTTGGATAAGACTTGCGATT
GATGATTCCGAGAAGGTCTTGCGATTGATTACTACATGCCCACCACACAT
ACACACACTTCGATTCAAGTTCGAACTCGGGCATCCAAGTCTCGGAATCA
CACTATCAAAGTCGAACTAGTTCAAAAATTAAACTTGCCAGGCTATCGTC
ATTTGCCTTCATCATGTGGCGATCCAAATTTATCATGGCATATGCCTTTG
TCTTACATTTCTTCGCCTTTCTTCTCATTGGGAAAATGACTCATTTGGAA
GAGGGAGAACTCCATCTACCGGCCAAAATTCTTGAAAGGACTCAAACGCC
CAATTTGGCTGTAGGACAAGATAAAAAAGTAATTGCTGTCTACTTCCCTC
AGTTCCACGAGATTGAGGAGAACAACAAATTTTGGGGGAAAGGCTTCACA
GATTTCTCCAATGTCGCAAAGGTTCACCAAAATCGGTACGGTCAGGCAAT
TATTAGGCCTGCCGAACGAATGGGCTTCTATGACTTGGTGTCTCCCAGCC
AACGGCGTTTCCAGGGGGAACTAGCAAGAAAGTATAATATTCATGGATTT
GCTATATACCATTACTGGTTCGGCACCAAAGCTATAATGACGAAGCCATT
GGAGTTGATGCTCTTAGACGGCTACCCTGACATTCCCTTCTGTTTAACTT
GGGCAAACGAGCCTTGGACACGACGGTGGAATGGAAATGACGGATCAGAG
GTTCTCCTCAATCAGACTTACGACCGAGAAACTTGGGAGCCTCACTTTGA
TTGGCTCTTGCCTTATCTGAAGCATAAGAATTATTTGAAATACAAGGGCC
TACCCGTCATCCTCATTTACAGAGCGGTCGACATTCCCGATTTGGAACAA
ATGATAAGTCTGTGGAGAATGTCGGCGAGGAATTCAAATTTAACGGGCCT
CCACGTGATACAAATAAATGGAGTAGGCTGGAATGGATCTTCTTCTTTAA
AATTGCAGCCAGGAATGGATTCTCTCGTTGAGGGTTTCCCAAGCTACATG
TCGACGTCAGGTTTCACTATGAACAACCTTGTGAGCACCCAGAAAAAGGC
AGACAGCTATTTCTATGGCGTTTCCGCCGCCTTTGATAATTCGCCTAGAT
ACCCCGACCCTACCGATGGTGCCACAATGTATCCGTTTCATCCGTCACAT
TTGTATTTTTGGCTACGTCAAAATTTGGCGAGGACGGAGCCCGGTGGATT
TGTGTTTTTAAATGCATGGAATGACTGGGGGCAGGGAGCTGCAATTGAGC
CCAGCATCCAATGGGGAAGGCGATGGCTTGAAGCCGTCCAAAAAGCTGTC
TTTGACGAACAGCGTGGCCATGTGTCAAAAATCATGTCTAATGGTTATGT
GAGCTCTGTGCCTTTGGATGAGAACCCTGGTATGCCTGTGAGCCAAAGGG
CGGGACAAGATAGAGTGTGCATAATAGTCCGCACCTATAAAGGCCACTCA
ACAGGAATCTACAATATTCATCAAACTCTCAACACGTTGCTTGCATTGAA
CCACAAAAATTGGAGAGCTTTTATCGTGAATACAGATGTTATTCCTTTTG
AGGACCTCCACCATATCACGGATCAATATGAACACGGAGGTAAAATTGAA
ATTTCACCGCTAACGGCCACTAAAAGCTTTACAGAGGATCCTAATTCAGC
CTATGATATAACGGATAGAGCCATAGAGCACCATTGTGGTTCTAGCAAGG
ATTTCAAATGGCTACTCGTCACAAATGGAGACAACTGGTACACTCCCGAT
GCTTTGGATTTCCTTCCCAATGATGTCGATCTTGTTTTGATGAATTTCTA
TTCACGATATTCCATCTGGGGTGCGATTTCATCGACAAATACTCCTCATG
ATCAGGCGTGCTGTGTAAGACTTCAAAATTATCGATGCATGGTAGCAGAT
GTCAAAATGGGCTACATAGATCTTGGTGCGGTGATATTTGATTATCAAAA
GTATCGGAAAGGGTACATCTCTTTTACAACATTTAATAAAGAGTCTGATA
CTCAATGTGGTCAGTTTGGCGGCTGCCACGATGGCCTCCTGATCGAGTAT
TTGATAGAAAATAAATGGTCTTATCGTGGTCATCCAGTTGATGTATGCAC
CATGCATCACAATTCAAACCCCAAAAGCTGCGAGCTTGTTGGTGGGACAT
GGTTCGACACAATGGATAGAAGTGCAATGGGCTGCTACTATGGGAATGTA
CTACCCATGCCGCTGGAATCAGTGAACTATCAGGCATATATGGCAGCTCA
TGCAGCATGCGTATGTTAATTTATACCTCCACAGACACAGGTCCCTGGGA
CAGGGAATGCTCGAAATACCAAACTCTGAGTTCACTATTGAGCTCGAGTT
CAGAGGGACCGAGTTCGATTTTTTTTCAAAAAACGATCATCACAAATGAG
CATACTCCAGCGTATTCAAGGGCCACAGAGGGAGCAGAACGCGTGTGATG
GATCGGAAATGGCAAAATAATTAAAAAGTGCATGGCTGGGACCCAAGAAC
GAGGTGGAAAGC

Coding sequence (CDS) from alignment at scaffold_32:45424..48085+

>mRNA_9784 ID=mRNA_9784|Name=jgi.p|Nanoce1779_2|658597|organism=Nannochloropsis oceanica|type=CDS|length=2106bp|location=Sequence derived from alignment at scaffold_32:45424..48085+ (Nannochloropsis oceanica)
ATGTGGCGATCCAAATTTATCATGGCATATGCCTTTGTCTTACATTTCTT
CGCCTTTCTTCTCATTGGGAAAATGACTCATTTGGAAGAGGGAGAACTCC
ATCTACCGGCCAAAATTCTTGAAAGGACTCAAACGCCCAATTTGGCTGTA
GGACAAGATAAAAAAGTAATTGCTGTCTACTTCCCTCAGTTCCACGAGAT
TGAGGAGAACAACAAATTTTGGGGGAAAGGCTTCACAGATTTCTCCAATG
TCGCAAAGGTTCACCAAAATCGGTACGGTCAGGCAATTATTAGGCCTGCC
GAACGAATGGGCTTCTATGACTTGGTGTCTCCCAGCCAACGGCGTTTCCA
GGGGGAACTAGCAAGAAAGTATAATATTCATGGATTTGCTATATACCATT
ACTGGTTCGGCACCAAAGCTATAATGACGAAGCCATTGGAGTTGATGCTC
TTAGACGGCTACCCTGACATTCCCTTCTGTTTAACTTGGGCAAACGAGCC
TTGGACACGACGGTGGAATGGAAATGACGGATCAGAGGTTCTCCTCAATC
AGACTTACGACCGAGAAACTTGGGAGCCTCACTTTGATTGGCTCTTGCCT
TATCTGAAGCATAAGAATTATTTGAAATACAAGGGCCTACCCGTCATCCT
CATTTACAGAGCGGTCGACATTCCCGATTTGGAACAAATGATAAGTCTGT
GGAGAATGTCGGCGAGGAATTCAAATTTAACGGGCCTCCACGTGATACAA
ATAAATGGAGTAGGCTGGAATGGATCTTCTTCTTTAAAATTGCAGCCAGG
AATGGATTCTCTCGTTGAGGGTTTCCCAAGCTACATGTCGACGTCAGGTT
TCACTATGAACAACCTTGTGAGCACCCAGAAAAAGGCAGACAGCTATTTC
TATGGCGTTTCCGCCGCCTTTGATAATTCGCCTAGATACCCCGACCCTAC
CGATGGTGCCACAATGTATCCGTTTCATCCGTCACATTTGTATTTTTGGC
TACGTCAAAATTTGGCGAGGACGGAGCCCGGTGGATTTGTGTTTTTAAAT
GCATGGAATGACTGGGGGCAGGGAGCTGCAATTGAGCCCAGCATCCAATG
GGGAAGGCGATGGCTTGAAGCCGTCCAAAAAGCTGTCTTTGACGAACAGC
GTGGCCATGTGTCAAAAATCATGTCTAATGGTTATGTGAGCTCTGTGCCT
TTGGATGAGAACCCTGGTATGCCTGTGAGCCAAAGGGCGGGACAAGATAG
AGTGTGCATAATAGTCCGCACCTATAAAGGCCACTCAACAGGAATCTACA
ATATTCATCAAACTCTCAACACGTTGCTTGCATTGAACCACAAAAATTGG
AGAGCTTTTATCGTGAATACAGATGTTATTCCTTTTGAGGACCTCCACCA
TATCACGGATCAATATGAACACGGAGGTAAAATTGAAATTTCACCGCTAA
CGGCCACTAAAAGCTTTACAGAGGATCCTAATTCAGCCTATGATATAACG
GATAGAGCCATAGAGCACCATTGTGGTTCTAGCAAGGATTTCAAATGGCT
ACTCGTCACAAATGGAGACAACTGGTACACTCCCGATGCTTTGGATTTCC
TTCCCAATGATGTCGATCTTGTTTTGATGAATTTCTATTCACGATATTCC
ATCTGGGGTGCGATTTCATCGACAAATACTCCTCATGATCAGGCGTGCTG
TGTAAGACTTCAAAATTATCGATGCATGGTAGCAGATGTCAAAATGGGCT
ACATAGATCTTGGTGCGGTGATATTTGATTATCAAAAGTATCGGAAAGGG
TACATCTCTTTTACAACATTTAATAAAGAGTCTGATACTCAATGTGGTCA
GTTTGGCGGCTGCCACGATGGCCTCCTGATCGAGTATTTGATAGAAAATA
AATGGTCTTATCGTGGTCATCCAGTTGATGTATGCACCATGCATCACAAT
TCAAACCCCAAAAGCTGCGAGCTTGTTGGTGGGACATGGTTCGACACAAT
GGATAGAAGTGCAATGGGCTGCTACTATGGGAATGTACTACCCATGCCGC
TGGAATCAGTGAACTATCAGGCATATATGGCAGCTCATGCAGCATGCGTA
TGTTAA

Synonyms

Publications