jgi.p|Nanoce1779_2|569304, mRNA_9709 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|569304
Unique Name	mRNA_9709
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1476
Alignment location	scaffold_38:192269..193996 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	569390
Track	FilteredModels2
ProteinId	569304

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_38	supercontig	scaffold_38:192269..193996 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|569304	gene_9709	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|569304	mRNA_9709-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9709	CDS_9709	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_38:192269..193996+
coding sequence from alignment at scaffold_38:192269..193996+

mRNA sequence

>mRNA_9709 ID=mRNA_9709|Name=jgi.p|Nanoce1779_2|569304|organism=Nannochloropsis oceanica|type=mRNA|length=1476bp
ATGTCCAACATCTACCACTTGGAGCCCCCGACCAAGGGGAAGGTCGTCTT
GAAGACGTCCTTCGGGCCTGTCGACATTGAGCTGTGGCCACGCGAAGCAC
CATTGGCATGCAGAAATTTCGTCCAGCTCGCATTGGAAGGGTACTACGAC
CACACTATCTTCCATCGCGTCGTGCCTGGTCTGTGCGTGCAAGGCGGGGA
CCCGACGGGGACAGGCGGAGGAGGGGAGAGCATTTATGTCTGCGCCGAAC
CAGGGGAGAGCGGGCATATAGGCAAGGGGAGGGGAGGCGGCTTTCGGTCT
GAGATCCACACAAGACTTAAATTTAACCACCGAGGCATCCTGGCCATGGC
GAACGACGTGGCGGAAGGCGGGAGGGAGGCGAAGGAGAGTAATCGCAGCC
AGTTCTTTGTAACGCTCGACGCGTGCGAGCACTTGAATGGGAAGCACACG
ATCTTCGGAAAAGTGACCGGGGAGACCATTTACAACGTACTGAGGATGGG
AGAGGTGGGCACGGACAGAGAGGATCGGCCTGTGACGCCGGTAAAGCTGG
AGGCGGTGGAGGTGTTGATGAATCCGTTTGATGACATTGTGCCGAGGGAT
AGGGGGGGGGAATTGAGGAAGAGGAGGGAGGAAGGGAGGGAGGGCCCGGG
CGGGGGGGAGGAGGAGGAGGAGAGGAGGAGGGTGGAGAAGAAGAGGCAGG
AAAGGTTGGGAAGGGCGGCGAAGAAAGACTTGAATTTATTGTCGTTTGGC
GATGATGAGGGAGAGGATGAGAATGAGGAGGAGGAGGAGGGAGCGAGGGA
GCGAGGGAGGAAGAGGAAGGGGGGATTGAGAAGTGTTCATGATGTGGTTG
AGAATAATGCTCTTTTAAAGAATGAAGCGGCTGATGATGTTTTAGGGCTG
GGAGAAAGGAAGGAGGAGGAAGAAGAGGAGGAGGAGGAAGAGAAAAAGAG
GAGGAAAACTGCTCGTGGAGATGGAAGGGAGAGAGGGAAGGAGGGAGGGA
AGGAAGGAGGAAAGGAGGGGAGCAGCAAAAGCATCACCAGAGGGAGTTCA
ACGAAGGAGGAGGAGGAGGAGGAGGAGGAGGGCGGGGTGGGCGGTGATGT
GACCCTCCCCGGGGTGGATGATGAGGCTGCGGTCTTTGCGGCGCGGATGC
GGGCTAGGTTGCAACAGCGGAACAAGCAGCACAAAACGCATGGGAAGGAG
GAGAAAAGGGAGGAGGAGGGAGGGAGAGAGGGGGGGAATGGCCTGCGGGA
GACGTACGAAGATGTCCGAGCTGCAGAAGCGGCAGAGGCACAGGCGCGTC
TGGTGAAAGAGAAAGCGGCGGAGTTCCGAAGGCTCAAGGCTGAGGTGCTG
GGAAGGGGGGGGGGGGGGGGAGGGGTAAAGGTATCGGCGGCCGTGGCGGT
GGATACGGGGGAGGGTGCGAGGAGGAAGAGGGAGGAGGAGGGGTTGAAGG
AAATGCTGACACCCCCCTGGAGATGA

protein sequence of jgi.p|Nanoce1779_2|569304

>mRNA_9709-protein ID=mRNA_9709-protein|Name=jgi.p|Nanoce1779_2|569304|organism=Nannochloropsis oceanica|type=polypeptide|length=492bp
MSNIYHLEPPTKGKVVLKTSFGPVDIELWPREAPLACRNFVQLALEGYYD
HTIFHRVVPGLCVQGGDPTGTGGGGESIYVCAEPGESGHIGKGRGGGFRS
EIHTRLKFNHRGILAMANDVAEGGREAKESNRSQFFVTLDACEHLNGKHT
IFGKVTGETIYNVLRMGEVGTDREDRPVTPVKLEAVEVLMNPFDDIVPRD
RGGELRKRREEGREGPGGGEEEEERRRVEKKRQERLGRAAKKDLNLLSFG
DDEGEDENEEEEEGARERGRKRKGGLRSVHDVVENNALLKNEAADDVLGL
GERKEEEEEEEEEEKKRRKTARGDGRERGKEGGKEGGKEGSSKSITRGSS
TKEEEEEEEEGGVGGDVTLPGVDDEAAVFAARMRARLQQRNKQHKTHGKE
EKREEEGGREGGNGLRETYEDVRAAEAAEAQARLVKEKAAEFRRLKAEVL
GRGGGGGGVKVSAAVAVDTGEGARRKREEEGLKEMLTPPWR*

mRNA from alignment at scaffold_38:192269..193996+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9709 ID=mRNA_9709|Name=jgi.p|Nanoce1779_2|569304|organism=Nannochloropsis oceanica|type=mRNA|length=1728bp|location=Sequence derived from alignment at scaffold_38:192269..193996+ (Nannochloropsis oceanica)
ATGTCCAACATCTACCACTTGGAGCCCCCGACCAAGGGGAAGGTCGTCTT
GAAGACGTCCTTCGGGCCTGTCGACATTGAGCTGTGGCCACGCGAAGCAC
CATTGGCATGCAGGTGGGTAGAAATTGATTCCAAGAAAGCGAGAGGAAAA
AGGGGCGATGGGATGGTGCGGTGAGGCCGCCTCTGTTGCCTCCATCTCTC
CTTCCCTCCCTCCCTCCACAGTGAATCATTGCTGTGTTTCGTGCTCATTT
TGCATCTCACATCGCTTAACCACCCACCTAGTCCCACTTCTGGCCAATGC
ATCGTCTATCATTCTCTGAGACAATCCCACCCTCCCTCCCTCCCACACTC
CCTTCTCCCTCCCAGAAATTTCGTCCAGCTCGCATTGGAAGGGTACTACG
ACCACACTATCTTCCATCGCGTCGTGCCTGGTCTGTGCGTGCAAGGCGGG
GACCCGACGGGGACAGGCGGAGGAGGGGAGAGCATTTATGTCTGCGCCGA
ACCAGGGGAGAGCGGGCATATAGGCAAGGGGAGGGGAGGCGGCTTTCGGT
CTGAGATCCACACAAGACTTAAATTTAACCACCGAGGCATCCTGGCCATG
GCGAACGACGTGGCGGAAGGCGGGAGGGAGGCGAAGGAGAGTAATCGCAG
CCAGTTCTTTGTAACGCTCGACGCGTGCGAGCACTTGAATGGGAAGCACA
CGATCTTCGGAAAAGTGACCGGGGAGACCATTTACAACGTACTGAGGATG
GGAGAGGTGGGCACGGACAGAGAGGATCGGCCTGTGACGCCGGTAAAGCT
GGAGGCGGTGGAGGTGTTGATGAATCCGTTTGATGACATTGTGCCGAGGG
ATAGGGGGGGGGAATTGAGGAAGAGGAGGGAGGAAGGGAGGGAGGGCCCG
GGCGGGGGGGAGGAGGAGGAGGAGAGGAGGAGGGTGGAGAAGAAGAGGCA
GGAAAGGTTGGGAAGGGCGGCGAAGAAAGACTTGAATTTATTGTCGTTTG
GCGATGATGAGGGAGAGGATGAGAATGAGGAGGAGGAGGAGGGAGCGAGG
GAGCGAGGGAGGAAGAGGAAGGGGGGATTGAGAAGTGTTCATGATGTGGT
TGAGAATAATGCTCTTTTAAAGAATGAAGCGGCTGATGATGTTTTAGGGC
TGGGAGAAAGGAAGGAGGAGGAAGAAGAGGAGGAGGAGGAAGAGAAAAAG
AGGAGGAAAACTGCTCGTGGAGATGGAAGGGAGAGAGGGAAGGAGGGAGG
GAAGGAAGGAGGAAAGGAGGGGAGCAGCAAAAGCATCACCAGAGGGAGTT
CAACGAAGGAGGAGGAGGAGGAGGAGGAGGAGGGCGGGGTGGGCGGTGAT
GTGACCCTCCCCGGGGTGGATGATGAGGCTGCGGTCTTTGCGGCGCGGAT
GCGGGCTAGGTTGCAACAGCGGAACAAGCAGCACAAAACGCATGGGAAGG
AGGAGAAAAGGGAGGAGGAGGGAGGGAGAGAGGGGGGGAATGGCCTGCGG
GAGACGTACGAAGATGTCCGAGCTGCAGAAGCGGCAGAGGCACAGGCGCG
TCTGGTGAAAGAGAAAGCGGCGGAGTTCCGAAGGCTCAAGGCTGAGGTGC
TGGGAAGGGGGGGGGGGGGGGGAGGGGTAAAGGTATCGGCGGCCGTGGCG
GTGGATACGGGGGAGGGTGCGAGGAGGAAGAGGGAGGAGGAGGGGTTGAA
GGAAATGCTGACACCCCCCTGGAGATGA

Coding sequence (CDS) from alignment at scaffold_38:192269..193996+

>mRNA_9709 ID=mRNA_9709|Name=jgi.p|Nanoce1779_2|569304|organism=Nannochloropsis oceanica|type=CDS|length=2952bp|location=Sequence derived from alignment at scaffold_38:192269..193996+ (Nannochloropsis oceanica)
ATGTCCAACATCTACCACTTGGAGCCCCCGACCAAGGGGAAGGTCGTCTT
GAAGACGTCCTTCGGGCCTGTCGACATTGAGCTGTGGCCACGCGAAGCAC
CATTGGCATGCAGAAATTTCGTCCAGCTCGCATTGGAAGGGTACTACGAC
CACACTATCTTCCATCGCGTCGTGCCTGGTCTGTGCGTGCAAGGCGGGGA
CCCGACGGGGACAGGCGGAGGAGGGGAGAGCATTTATGTCTGCGCCGAAC
CAGGGGAGAGCGGGCATATAGGCAAGGGGAGGGGAGGCGGCTTTCGGTCT
GAGATCCACACAAGACTTAAATTTAACCACCGAGGCATCCTGGCCATGGC
GAACGACGTGGCGGAAGGCGGGAGGGAGGCGAAGGAGAGTAATCGCAGCC
AGTTCTTTGTAACGCTCGACGCGTGCGAGCACTTGAATGGGAAGCACACG
ATCTTCGGAAAAGTGACCGGGGAGACCATTTACAACGTACTGAGGATGGG
AGAGGTGGGCACGGACAGAGAGGATCGGCCTGTGACGCCGGTAAAGCTGG
AGGCGGTGGAGGTGTTGATGAATCCGTTTGATGACATTGTGCCGAGGGAT
AGGGGGGGGGAATTGAGGAAGAGGAGGGAGGAAGGGAGGGAGGGCCCGGG
CGGGGGGGAGGAGGAGGAGGAGAGGAGGAGGGTGGAGAAGAAGAGGCAGG
AAAGGTTGGGAAGGGCGGCGAAGAAAGACTTGAATTTATTGTCGTTTGGC
GATGATGAGGGAGAGGATGAGAATGAGGAGGAGGAGGAGGGAGCGAGGGA
GCGAGGGAGGAAGAGGAAGGGGGGATTGAGAAGTGTTCATGATGTGGTTG
AGAATAATGCTCTTTTAAAGAATGAAGCGGCTGATGATGTTTTAGGGCTG
GGAGAAAGGAAGGAGGAGGAAGAAGAGGAGGAGGAGGAAGAGAAAAAGAG
GAGGAAAACTGCTCGTGGAGATGGAAGGGAGAGAGGGAAGGAGGGAGGGA
AGGAAGGAGGAAAGGAGGGGAGCAGCAAAAGCATCACCAGAGGGAGTTCA
ACGAAGGAGGAGGAGGAGGAGGAGGAGGAGGGCGGGGTGGGCGGTGATGT
GACCCTCCCCGGGGTGGATGATGAGGCTGCGGTCTTTGCGGCGCGGATGC
GGGCTAGGTTGCAACAGCGGAACAAGCAGCACAAAACGCATGGGAAGGAG
GAGAAAAGGGAGGAGGAGGGAGGGAGAGAGGGGGGGAATGGCCTGCGGGA
GACGTACGAAGATGTCCGAGCTGCAGAAGCGGCAGAGGCACAGGCGCGTC
TGGTGAAAGAGAAAGCGGCGGAGTTCCGAAGGCTCAAGGCTGAGGTGCTG
GGAAGGGGGGGGGGGGGGGGAGGGGTAAAGGTATCGGCGGCCGTGGCGGT
GGATACGGGGGAGGGTGCGAGGAGGAAGAGGGAGGAGGAGGGGTTGAAGG
AAATGCTGACACCCCCCTGGAGATGAATGTCCAACATCTACCACTTGGAG
CCCCCGACCAAGGGGAAGGTCGTCTTGAAGACGTCCTTCGGGCCTGTCGA
CATTGAGCTGTGGCCACGCGAAGCACCATTGGCATGCAGAAATTTCGTCC
AGCTCGCATTGGAAGGGTACTACGACCACACTATCTTCCATCGCGTCGTG
CCTGGTCTGTGCGTGCAAGGCGGGGACCCGACGGGGACAGGCGGAGGAGG
GGAGAGCATTTATGTCTGCGCCGAACCAGGGGAGAGCGGGCATATAGGCA
AGGGGAGGGGAGGCGGCTTTCGGTCTGAGATCCACACAAGACTTAAATTT
AACCACCGAGGCATCCTGGCCATGGCGAACGACGTGGCGGAAGGCGGGAG
GGAGGCGAAGGAGAGTAATCGCAGCCAGTTCTTTGTAACGCTCGACGCGT
GCGAGCACTTGAATGGGAAGCACACGATCTTCGGAAAAGTGACCGGGGAG
ACCATTTACAACGTACTGAGGATGGGAGAGGTGGGCACGGACAGAGAGGA
TCGGCCTGTGACGCCGGTAAAGCTGGAGGCGGTGGAGGTGTTGATGAATC
CGTTTGATGACATTGTGCCGAGGGATAGGGGGGGGGAATTGAGGAAGAGG
AGGGAGGAAGGGAGGGAGGGCCCGGGCGGGGGGGAGGAGGAGGAGGAGAG
GAGGAGGGTGGAGAAGAAGAGGCAGGAAAGGTTGGGAAGGGCGGCGAAGA
AAGACTTGAATTTATTGTCGTTTGGCGATGATGAGGGAGAGGATGAGAAT
GAGGAGGAGGAGGAGGGAGCGAGGGAGCGAGGGAGGAAGAGGAAGGGGGG
ATTGAGAAGTGTTCATGATGTGGTTGAGAATAATGCTCTTTTAAAGAATG
AAGCGGCTGATGATGTTTTAGGGCTGGGAGAAAGGAAGGAGGAGGAAGAA
GAGGAGGAGGAGGAAGAGAAAAAGAGGAGGAAAACTGCTCGTGGAGATGG
AAGGGAGAGAGGGAAGGAGGGAGGGAAGGAAGGAGGAAAGGAGGGGAGCA
GCAAAAGCATCACCAGAGGGAGTTCAACGAAGGAGGAGGAGGAGGAGGAG
GAGGAGGGCGGGGTGGGCGGTGATGTGACCCTCCCCGGGGTGGATGATGA
GGCTGCGGTCTTTGCGGCGCGGATGCGGGCTAGGTTGCAACAGCGGAACA
AGCAGCACAAAACGCATGGGAAGGAGGAGAAAAGGGAGGAGGAGGGAGGG
AGAGAGGGGGGGAATGGCCTGCGGGAGACGTACGAAGATGTCCGAGCTGC
AGAAGCGGCAGAGGCACAGGCGCGTCTGGTGAAAGAGAAAGCGGCGGAGT
TCCGAAGGCTCAAGGCTGAGGTGCTGGGAAGGGGGGGGGGGGGGGGAGGG
GTAAAGGTATCGGCGGCCGTGGCGGTGGATACGGGGGAGGGTGCGAGGAG
GAAGAGGGAGGAGGAGGGGTTGAAGGAAATGCTGACACCCCCCTGGAGAT
GA

Synonyms

Publications