jgi.p|Nanoce1779_2|298533, mRNA_2267 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|298533
Unique Name	mRNA_2267
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1085
Alignment location	scaffold_4:1223236..1224726 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	298619
Track	FilteredModels2
ProteinId	298533

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1223236..1224726 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|298533	gene_2267	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|298533	mRNA_2267-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2267	CDS_2267	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1223236..1224726+
coding sequence from alignment at scaffold_4:1223236..1224726+

mRNA sequence

>mRNA_2267 ID=mRNA_2267|Name=jgi.p|Nanoce1779_2|298533|organism=Nannochloropsis oceanica|type=mRNA|length=1085bp
GTGTGCTTGAGCAAAGCAAAAAGGTAAATCATATTTTTGTGGAAAAGGAA
CCATGAGGCAAACTCAGGCAGGAGGTCGGATTGTCGGTCCTCGCTCCAGA
CAAGTCTTTTGATGCCAAAATTTGGGTCATGGATGCACTGAAACCCATCC
CCATACCTCCACTACTTCGTAATCAGGCATATCAAGCCATTAGGACGCTG
CAGCGGTCCCTTGGTAGGCATGGCTCCTTCATCAGCCTCCTTCAAAGCAC
TGTTACCATTGGCCTCAACATTCCAGACGACGACATGCTGTGAAGCAACT
ACACCCCGGGCCTCCGACCAAGACATCACCAGCCGCAAGATCCTCCGGCT
CATGCGCGAACTTTCCCACAGTGCCTTCTCCGGTGTCCTTTTGCATGGTA
ACAAAGGTTCAAATGACAACCCGCACTCCCTCGAAACCCTTGACATCGGC
CCAGGGCCCCATGTCCGTGTACGGCTTTGCGTCCCTCCTCATCTCTGCGA
TAGTAATGCCTTATTAAATTCCGGGGCGATCATGGCCTGGTTTGATGAGG
TATCATCGTGGGGATTCGTTTCGGCTGATGGTCGGCATCGGCCAGGCGTT
AGTGTCAGCTTGAATACCACTGTGCTCGGATGGGTGTGGGCAGGGTCCGA
GGTGGAAATTGAGTCGCACTGCAAGAAGGTGGGGGACACGCTGGGCTTTG
CAGACATGGTGCTACGAGATGTGGCGACTGGAAGGGAGCTCGCCACTGGT
CGGCACGTTAAATTTTTGAAAATGGGAAATACTTGGGCAGTGGCCATGCA
CCCATGGGCTTTTCCTCTTGTGCACTTCCTGGTGTCTACCCTTTATCCAC
CATCCCTCCTCTCCTTCTTCCTCCTCATCACCCTTCTGCTACGAAGCTAC
CGCCAGCTTTTTCGTGGCCCCTGCAGTGTGTAATAGCTTCGGTTCTTTAC
ATGGAGGAGCCGTTGCTATGCTCGCGGAGCGTGCCGCCCTCCTCCTGTAC
CAACAAGCCGCGCGATGGGCAGGGAAGGAGGGAGAGACACAGTTAGCGAG
GGCACGGACATTGAGTGTGGACTACATGTCGCCAT

protein sequence of jgi.p|Nanoce1779_2|298533

>mRNA_2267-protein ID=mRNA_2267-protein|Name=jgi.p|Nanoce1779_2|298533|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MAPSSASFKALLPLASTFQTTTCCEATTPRASDQDITSRKILRLMRELSH
SAFSGVLLHGNKGSNDNPHSLETLDIGPGPHVRVRLCVPPHLCDSNALLN
SGAIMAWFDEVSSWGFVSADGRHRPGVSVSLNTTVLGWVWAGSEVEIESH
CKKVGDTLGFADMVLRDVATGRELATGRHVKFLKMGNTWAVAMHPWAFPL
VHFLVSTLYPPSLLSFFLLITLLLRSYRQLFRGPCSV*

mRNA from alignment at scaffold_4:1223236..1224726+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2267 ID=mRNA_2267|Name=jgi.p|Nanoce1779_2|298533|organism=Nannochloropsis oceanica|type=mRNA|length=1491bp|location=Sequence derived from alignment at scaffold_4:1223236..1224726+ (Nannochloropsis oceanica)
GTGTGCTTGAGCAAAGCAAAAAGGTAAATCATATTTTTGTGGAAAAGGAA
CCATGAGGCAAACTCAGGCAGGAGGTCGGATTGTCGGTCCTCGCTCCAGA
CAAGTCTTTTGATGCCAAAATTTGGGTCATGGATGCACTGAAACCCATCC
CCATACCTCCACTACTTCGTAATCAGGCATATCAAGCCATTAGGACGCTG
CAGCGGTCCCTTGGTAGGCATGGCTCCTTCATCAGCCTCCTTCAAAGCAC
TGTTACCATTGGCCTCAACATTCCAGACGACGACATGCTGTGAAGCAACT
ACACCCCGGGCCTCCGACCAAGACATCACCAGCCGCAAGATCCTCCGGCT
CATGCGCGAACTTTCCCACAGTGCCTTCTCCGGTGTCCTTTTGCATGGTA
ACAAAGGTTCAAATGACAACCCGCACTCCCTCGAAACCCTTGACATCGGC
CCAGGGCCCCATGTCCGTGTACGGCTTTGCGTCCCTCCTCATCTCTGCGA
TAGTAATGCCTTATTAAATTCCGGGGCGATCATGGCCTGGTTTGATGAGG
TATCATCGTGGGGATTCGTTTCGGCTGATGGTCGGCATCGGCCAGGCGTT
AGTGTCAGCTTGAATACCACTGTGCTCGGATGGGTGTGGGCAGGGTCCGA
GGTGGAAATTGAGTCGCACTGCAAGAAGGTGGGGGACACGCTGGGCTTTG
CAGACATGGTGCTACGAGATGTGGCGACTGGAAGGGAGGTATGTAGCCGT
TGGTGGGAAAGAGGGGGAGGGGACGTGTCATCTTAAACATACTGCTTATC
CTTTTCTTCCTTCCTTCTTCCCTCCTCTTCTTCCAGCTCGCCACTGGTCG
GCACGTTAAATTTTTGAAAATGGGAAATACTTGGGCAGTGGCCATGCACC
CATGGGCTTTTCCTCTTGTGCACTTCCTGGTGTCTACCCTTTATCTACCA
GTATTACGAGGAGGAGAAGGAGGAGGAGGAGGAGGTGGAGGAGGAGGAGG
AGGAGGAGGAGGGGGAGGCGGAAAGAAGGGCAATCAGCATCCTGACTCGG
AGGGAGGGGCAGTCATTGCACGGCGGGAAATTAAAGGTAGGGTGGTACAT
GTCCGGGAATTTGGAAGGGTAGTAGTGCGTAACCTTATCGTTCTCCCACA
CTTGCTCACGTCTCCAATCCTCCTTCTCTCCCTTCCTCCCTCACTCCCTC
CCTCCCCAGTCGACGTCAACCAACTGCTCGACTTGCAAAACTTCCTCATC
ATCCACCATCCCTCCTCTCCTTCTTCCTCCTCATCACCCTTCTGCTACGA
AGCTACCGCCAGCTTTTTCGTGGCCCCTGCAGTGTGTAATAGCTTCGGTT
CTTTACATGGAGGAGCCGTTGCTATGCTCGCGGAGCGTGCCGCCCTCCTC
CTGTACCAACAAGCCGCGCGATGGGCAGGGAAGGAGGGAGAGACACAGTT
AGCGAGGGCACGGACATTGAGTGTGGACTACATGTCGCCAT

Coding sequence (CDS) from alignment at scaffold_4:1223236..1224726+

>mRNA_2267 ID=mRNA_2267|Name=jgi.p|Nanoce1779_2|298533|organism=Nannochloropsis oceanica|type=CDS|length=2142bp|location=Sequence derived from alignment at scaffold_4:1223236..1224726+ (Nannochloropsis oceanica)
ATGGCTCCTTCATCAGCCTCCTTCAAAGCACTGTTACCATTGGCCTCAAC
ATTCCAGACGACGACATGCTGTGAAGCAACTACACCCCGGGCCTCCGACC
AAGACATCACCAGCCGCAAGATCCTCCGGCTCATGCGCGAACTTTCCCAC
AGTGCCTTCTCCGGTGTCCTTTTGCATGGTAACAAAGGTTCAAATGACAA
CCCGCACTCCCTCGAAACCCTTGACATCGGCCCAGGGCCCCATGTCCGTG
TACGGCTTTGCGTCCCTCCTCATCTCTGCGATAGTAATGCCTTATTAAAT
TCCGGGGCGATCATGGCCTGGTTTGATGAGGTATCATCGTGGGGATTCGT
TTCGGCTGATGGTCGGCATCGGCCAGGCGTTAGTGTCAGCTTGAATACCA
CTGTGCTCGGATGGGTGTGGGCAGGGTCCGAGGTGGAAATTGAGTCGCAC
TGCAAGAAGGTGGGGGACACGCTGGGCTTTGCAGACATGGTGCTACGAGA
TGTGGCGACTGGAAGGGAGCTCGCCACTGGTCGGCACGTTAAATTTTTGA
AAATGGGAAATACTTGGGCAGTGGCCATGCACCCATGGGCTTTTCCTCTT
GTGCACTTCCTGGTGTCTACCCTTTATCCACCATCCCTCCTCTCCTTCTT
CCTCCTCATCACCCTTCTGCTACGAAGCTACCGCCAGCTTTTTCGTGGCC
CCTGCAGTGTGTAAATGGCTCCTTCATCAGCCTCCTTCAAAGCACTGTTA
CCATTGGCCTCAACATTCCAGACGACGACATGCTGTGAAGCAACTACACC
CCGGGCCTCCGACCAAGACATCACCAGCCGCAAGATCCTCCGGCTCATGC
GCGAACTTTCCCACAGTGCCTTCTCCGGTGTCCTTTTGCATGGTAACAAA
GGTTCAAATGACAACCCGCACTCCCTCGAAACCCTTGACATCGGCCCAGG
GCCCCATGTCCGTGTACGGCTTTGCGTCCCTCCTCATCTCTGCGATAGTA
ATGCCTTATTAAATTCCGGGGCGATCATGGCCTGGTTTGATGAGGTATCA
TCGTGGGGATTCGTTTCGGCTGATGGTCGGCATCGGCCAGGCGTTAGTGT
CAGCTTGAATACCACTGTGCTCGGATGGGTGTGGGCAGGGTCCGAGGTGG
AAATTGAGTCGCACTGCAAGAAGGTGGGGGACACGCTGGGCTTTGCAGAC
ATGGTGCTACGAGATGTGGCGACTGGAAGGGAGCTCGCCACTGGTCGGCA
CGTTAAATTTTTGAAAATGGGAAATACTTGGGCAGTGGCCATGCACCCAT
GGGCTTTTCCTCTTGTGCACTTCCTGGTGTCTACCCTTTATCCACCATCC
CTCCTCTCCTTCTTCCTCCTCATCACCCTTCTGCTACGAAGCTACCGCCA
GCTTTTTCGTGGCCCCTGCAGTGTGTAAATGGCTCCTTCATCAGCCTCCT
TCAAAGCACTGTTACCATTGGCCTCAACATTCCAGACGACGACATGCTGT
GAAGCAACTACACCCCGGGCCTCCGACCAAGACATCACCAGCCGCAAGAT
CCTCCGGCTCATGCGCGAACTTTCCCACAGTGCCTTCTCCGGTGTCCTTT
TGCATGGTAACAAAGGTTCAAATGACAACCCGCACTCCCTCGAAACCCTT
GACATCGGCCCAGGGCCCCATGTCCGTGTACGGCTTTGCGTCCCTCCTCA
TCTCTGCGATAGTAATGCCTTATTAAATTCCGGGGCGATCATGGCCTGGT
TTGATGAGGTATCATCGTGGGGATTCGTTTCGGCTGATGGTCGGCATCGG
CCAGGCGTTAGTGTCAGCTTGAATACCACTGTGCTCGGATGGGTGTGGGC
AGGGTCCGAGGTGGAAATTGAGTCGCACTGCAAGAAGGTGGGGGACACGC
TGGGCTTTGCAGACATGGTGCTACGAGATGTGGCGACTGGAAGGGAGCTC
GCCACTGGTCGGCACGTTAAATTTTTGAAAATGGGAAATACTTGGGCAGT
GGCCATGCACCCATGGGCTTTTCCTCTTGTGCACTTCCTGGTGTCTACCC
TTTATCCACCATCCCTCCTCTCCTTCTTCCTCCTCATCACCCTTCTGCTA
CGAAGCTACCGCCAGCTTTTTCGTGGCCCCTGCAGTGTGTAA

Synonyms

Publications