jgi.p|Nanoce1779_2|298689, mRNA_2273 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|298689
Unique NamemRNA_2273
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length768
Alignment locationscaffold_4:1239661..1240428 -

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Properties
Property NameValue
TranscriptId298775
TrackFilteredModels2
ProteinId298689
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1239661..1240428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|298689gene_2273Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|298689mRNA_2273-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2273CDS_2273Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2273 ID=mRNA_2273|Name=jgi.p|Nanoce1779_2|298689|organism=Nannochloropsis oceanica|type=mRNA|length=768bp
TTCTCCGAATAGTATGTCATAAAAGTGCGCACTCCGGGGTCGAGCGCCCC
TACTCGCTTCCCCCACCTTTTTTTTTACTTCTTGCTCTTCTTATTCCACC
TTGTAAGGCATCAAAATGTACCATATCCCTGAACAATGCTGAGTACGACA
GTCTGCGTCAACTCCATGCTTGGGGTTCTCGCACATCTTAAAACCTTTCT
CCATCCCAAGATTGTGCTGGGTTGAAAAGAGGAAGAGCTCCGGCAATTTT
TGGTCCTCGCTTGGCGCGCGTGCGAATAGCCGATGGAGTCTCTTTCATTT
AAACACATTGGACCCGTTCTCCTCTGGGGCACTCACGAACTTTTTAAAAT
CTGGCTATCCGGCTTGGCCTTTTTATCCTTGATAAGACGAAGACCTGAGC
TTCATGTGTCCCGGGCCGCCATCATCCACACACGCATCTTCCTGGCCTGT
ACAACCGTCGGACATAGGCGAGTCTTTTTCACGCGCCAGAGATCTTGGCT
GCTCTCTGTGTTCGTGTGTGTTGAGGGGTGGGGAAGGGAGATGATAACAC
TCTTCCTCCTACATCTGCTTGGAGGGGTGCCTCCCATCCTAAATCTCCAC
CTTTTATTGCAATATATATTTACCCCTAGATCTACTCGCCAGATCTACTT
GCTGGCTTGCCTTTGGAGGCCTTGGTCTCTTTTGTAGAATAATTTATGTA
CAAAGGTCACGCGACAATCTCCTCGTCCGCGTCGCGCTTCCGGTATGAGT
CAATCCTTACCCATGACA
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protein sequence of jgi.p|Nanoce1779_2|298689

>mRNA_2273-protein ID=mRNA_2273-protein|Name=jgi.p|Nanoce1779_2|298689|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MESLSFKHIGPVLLWGTHELFKIWLSGLAFLSLIRRRPELHVSRAAIIHT
RIFLACTTVGHRRVFFTRQRSWLLSVFVCVEGWGREMITLFLLHLLGGVP
PILNLHLLLQYIFTPRSTRQIYLLACLWRPWSLL*
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mRNA from alignment at scaffold_4:1239661..1240428-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2273 ID=mRNA_2273|Name=jgi.p|Nanoce1779_2|298689|organism=Nannochloropsis oceanica|type=mRNA|length=768bp|location=Sequence derived from alignment at scaffold_4:1239661..1240428- (Nannochloropsis oceanica)
TTCTCCGAATAGTATGTCATAAAAGTGCGCACTCCGGGGTCGAGCGCCCC
TACTCGCTTCCCCCACCTTTTTTTTTACTTCTTGCTCTTCTTATTCCACC
TTGTAAGGCATCAAAATGTACCATATCCCTGAACAATGCTGAGTACGACA
GTCTGCGTCAACTCCATGCTTGGGGTTCTCGCACATCTTAAAACCTTTCT
CCATCCCAAGATTGTGCTGGGTTGAAAAGAGGAAGAGCTCCGGCAATTTT
TGGTCCTCGCTTGGCGCGCGTGCGAATAGCCGATGGAGTCTCTTTCATTT
AAACACATTGGACCCGTTCTCCTCTGGGGCACTCACGAACTTTTTAAAAT
CTGGCTATCCGGCTTGGCCTTTTTATCCTTGATAAGACGAAGACCTGAGC
TTCATGTGTCCCGGGCCGCCATCATCCACACACGCATCTTCCTGGCCTGT
ACAACCGTCGGACATAGGCGAGTCTTTTTCACGCGCCAGAGATCTTGGCT
GCTCTCTGTGTTCGTGTGTGTTGAGGGGTGGGGAAGGGAGATGATAACAC
TCTTCCTCCTACATCTGCTTGGAGGGGTGCCTCCCATCCTAAATCTCCAC
CTTTTATTGCAATATATATTTACCCCTAGATCTACTCGCCAGATCTACTT
GCTGGCTTGCCTTTGGAGGCCTTGGTCTCTTTTGTAGAATAATTTATGTA
CAAAGGTCACGCGACAATCTCCTCGTCCGCGTCGCGCTTCCGGTATGAGT
CAATCCTTACCCATGACA
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Coding sequence (CDS) from alignment at scaffold_4:1239661..1240428-

>mRNA_2273 ID=mRNA_2273|Name=jgi.p|Nanoce1779_2|298689|organism=Nannochloropsis oceanica|type=CDS|length=405bp|location=Sequence derived from alignment at scaffold_4:1239661..1240428- (Nannochloropsis oceanica)
ATGGAGTCTCTTTCATTTAAACACATTGGACCCGTTCTCCTCTGGGGCAC
TCACGAACTTTTTAAAATCTGGCTATCCGGCTTGGCCTTTTTATCCTTGA
TAAGACGAAGACCTGAGCTTCATGTGTCCCGGGCCGCCATCATCCACACA
CGCATCTTCCTGGCCTGTACAACCGTCGGACATAGGCGAGTCTTTTTCAC
GCGCCAGAGATCTTGGCTGCTCTCTGTGTTCGTGTGTGTTGAGGGGTGGG
GAAGGGAGATGATAACACTCTTCCTCCTACATCTGCTTGGAGGGGTGCCT
CCCATCCTAAATCTCCACCTTTTATTGCAATATATATTTACCCCTAGATC
TACTCGCCAGATCTACTTGCTGGCTTGCCTTTGGAGGCCTTGGTCTCTTT
TGTAG
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Synonyms
Publications