jgi.p|Nanoce1779_2|578927, mRNA_2067 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578927
Unique NamemRNA_2067
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length979
Alignment locationscaffold_4:697611..699129 -

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Properties
Property NameValue
TranscriptId579013
TrackFilteredModels2
ProteinId578927
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:697611..699129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578927gene_2067Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578927mRNA_2067-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2067CDS_2067Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2067 ID=mRNA_2067|Name=jgi.p|Nanoce1779_2|578927|organism=Nannochloropsis oceanica|type=mRNA|length=979bp
ACAGGTGCAACTCCCTCCTTCTTTCCCAAGCATGAAGTTCCTGACCTTTG
CCACTGTCGTGGGCACGGCCTCGGCCTTCCTGGCCCCTGCCCCCATGCAC
ACCCGCACCCAAGGCCGCATGTACATGGCCGACCAGGCCCCTGTCGATGA
GGAAATGCGGTCCATCGCCCTGCCTTTTGCCGCCAAGCCCCAGAACTTGA
ACGGTGAGCTGGCCGGAGATGTGGGCTTTGATCCGTTCAAGTTTACGGAC
AAGGGTGATGTCGCCAAGTTCCGTGTGGCGGAGCTCAAGCACGGTCGTGT
GGCTATGTTGGCGGTTGTGGGTGTGTTTGTGCAGGAGCTGTACCAGTGGA
ACGACAACTTTCCCTCCAAGAACTTCCTCGAGGCCCTCAAGACCGCCCCC
CCCCTGGGTCTCCTCCAGCTTTTCGTCTTCCTCGGCGCCTATGACGTAAC
CACCTCCAAGTTCGATGGCCGCGTCCCGGGTGACATTGGCTTTGACCCCC
TCCGTTTGTCTGCTGATGGTCTCCGTGAGAACTGGCAGCTGGCTGAGCTC
AAGCATGGCCGACTTGCCATGATTGCCTTCTTGGCCTTCGTCGTCCAGGC
CTCCATCTCCGACAAGCCCATCCTCGAGCAGACTTTTGAGTGGGCCAAAA
GCTTCGCGTAGATGCTATACTTAACTAGCTAGCGCGGCAACAATAGATTC
AAAACGCAGCGTTCCCGCCTTGCCCCCGCGGGAGGTCGGGCGACATCAAC
CATTCGCACACACGCACGCACACACATCACCAACCAACAACGACAAGAAG
CCGGAGACTCGTCATTTCCAACAACAGCAAATTGTGGCATGAGTGAGCGA
GAGTGGCTGGCAAGGAGGAGGGCGAGGGGTGGTCAAGGAGACGAGGGAAG
AGTTTGACGTGATCCTTGGAAAGCCGCTGGCCACTCACACAAAACAGAAA
AGGAAAAGCAAAGCGCCTACTGGGTTTTA
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protein sequence of jgi.p|Nanoce1779_2|578927

>mRNA_2067-protein ID=mRNA_2067-protein|Name=jgi.p|Nanoce1779_2|578927|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MKFLTFATVVGTASAFLAPAPMHTRTQGRMYMADQAPVDEEMRSIALPFA
AKPQNLNGELAGDVGFDPFKFTDKGDVAKFRVAELKHGRVAMLAVVGVFV
QELYQWNDNFPSKNFLEALKTAPPLGLLQLFVFLGAYDVTTSKFDGRVPG
DIGFDPLRLSADGLRENWQLAELKHGRLAMIAFLAFVVQASISDKPILEQ
TFEWAKSFA*
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mRNA from alignment at scaffold_4:697611..699129-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2067 ID=mRNA_2067|Name=jgi.p|Nanoce1779_2|578927|organism=Nannochloropsis oceanica|type=mRNA|length=1519bp|location=Sequence derived from alignment at scaffold_4:697611..699129- (Nannochloropsis oceanica)
ACAGGTGCAACTCCCTCCTTCTTTCCCAAGCATGAAGTTCCTGACCTTTG
CCACTGTCGTGGGCACGGCCTCGGCCTTCCTGGCCCCTGCCCCCATGCAC
ACCCGCACCCAAGGCCGCGTAAGTAGTATACCGCTTGCTTAATATTGTAT
ATTGATAGTACTTGATATAGGAGGGTACCTTATAGCTAAGCTGGCATTCT
TCGCCGGAGCAACCCACAAGCGCAGGAGGAAGGGGATGATGCAGTTGTCT
GGATGCGAGGCATGCTATCAACCACATGATGTATTGGTATATATCACGTG
GTTCTGTGCACTCAGAAAAGAGCATATGTTCAACGTATTTATCTCTCCTC
CACTCCAATCATGAACATGTTGGACTTACCCCCTCCTTTTCCACCTTTCT
AATCCTCCCCGCAGATGTACATGGCCGACCAGGCCCCTGTCGATGAGGAA
ATGCGGTCCATCGCCCTGCCTTTTGCCGCCAAGCCCCAGAACTTGAACGG
TGAGCTGGCCGGAGATGTGGGCTTTGATCCGTTCAAGTTTACGGACAAGG
GTGATGTCGCCAAGTTCCGTGTGGCGGAGCTCAAGCACGGTACGTTCTCG
AGGAGTGAAGAGGACAAAGCTGTCTGGATTGAAAGGATGGACCTCGGCAG
TGTTCACCACTTGTCAGGTTTTCCTACTTCAGGATGGTAGTTATAATAAC
GACGTGAATATAGGGAGGGGAGACCCTGCGCTTCGTTCCACCTCTTCTGC
TCTCTGTTCCGAGGCATAAAGATAGACCTTAAGAACACTTTTCTTCCTTC
CTTCCCTTTTTTTCCTTTTCTTTCAAATTATAGGTCGTGTGGCTATGTTG
GCGGTTGTGGGTGTGTTTGTGCAGGAGCTGTACCAGTGGAACGACAACTT
TCCCTCCAAGAACTTCCTCGAGGCCCTCAAGACCGCCCCCCCCCTGGGTC
TCCTCCAGCTTTTCGTCTTCCTCGGCGCCTATGACGTAACCACCTCCAAG
TTCGATGGCCGCGTCCCGGGTGACATTGGCTTTGACCCCCTCCGTTTGTC
TGCTGATGGTCTCCGTGAGAACTGGCAGCTGGCTGAGCTCAAGCATGGCC
GACTTGCCATGATTGCCTTCTTGGCCTTCGTCGTCCAGGCCTCCATCTCC
GACAAGCCCATCCTCGAGCAGACTTTTGAGTGGGCCAAAAGCTTCGCGTA
GATGCTATACTTAACTAGCTAGCGCGGCAACAATAGATTCAAAACGCAGC
GTTCCCGCCTTGCCCCCGCGGGAGGTCGGGCGACATCAACCATTCGCACA
CACGCACGCACACACATCACCAACCAACAACGACAAGAAGCCGGAGACTC
GTCATTTCCAACAACAGCAAATTGTGGCATGAGTGAGCGAGAGTGGCTGG
CAAGGAGGAGGGCGAGGGGTGGTCAAGGAGACGAGGGAAGAGTTTGACGT
GATCCTTGGAAAGCCGCTGGCCACTCACACAAAACAGAAAAGGAAAAGCA
AAGCGCCTACTGGGTTTTA
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Coding sequence (CDS) from alignment at scaffold_4:697611..699129-

>mRNA_2067 ID=mRNA_2067|Name=jgi.p|Nanoce1779_2|578927|organism=Nannochloropsis oceanica|type=CDS|length=1890bp|location=Sequence derived from alignment at scaffold_4:697611..699129- (Nannochloropsis oceanica)
GTCGTGTGGCTATGTTGGCGGTTGTGGGTGTGTTTGTGCAGGAGCTGTAC
CAGTGGAACGACAACTTTCCCTCCAAGAACTTCCTCGAGGCCCTCAAGAC
CGCCCCCCCCCTGGGTCTCCTCCAGCTTTTCGTCTTCCTCGGCGCCTATG
ACGTAACCACCTCCAAGTTCGATGGCCGCGTCCCGGGTGACATTGGCTTT
GACCCCCTCCGTTTGTCTGCTGATGGTCTCCGTGAGAACTGGCAGCTGGC
TGAGCTCAAGCATGGCCGACTTGCCATGATTGCCTTCTTGGCCTTCGTCG
TCCAGGCCTCCATCTCCGACAAGCCCATCCTCGAGCAGACTTTTGAGTGG
GCCAAAAGCTTCGCGTAGATGTACATGGCCGACCAGGCCCCTGTCGATGA
GGAAATGCGGTCCATCGCCCTGCCTTTTGCCGCCAAGCCCCAGAACTTGA
ACGGTGAGCTGGCCGGAGATGTGGGCTTTGATCCGTTCAAGTTTACGGAC
AAGGGTGATGTCGCCAAGTTCCGTGTGGCGGAGCTCAAGCACGATGAAGT
TCCTGACCTTTGCCACTGTCGTGGGCACGGCCTCGGCCTTCCTGGCCCCT
GCCCCCATGCACACCCGCACCCAAGGCCGCGTCGTGTGGCTATGTTGGCG
GTTGTGGGTGTGTTTGTGCAGGAGCTGTACCAGTGGAACGACAACTTTCC
CTCCAAGAACTTCCTCGAGGCCCTCAAGACCGCCCCCCCCCTGGGTCTCC
TCCAGCTTTTCGTCTTCCTCGGCGCCTATGACGTAACCACCTCCAAGTTC
GATGGCCGCGTCCCGGGTGACATTGGCTTTGACCCCCTCCGTTTGTCTGC
TGATGGTCTCCGTGAGAACTGGCAGCTGGCTGAGCTCAAGCATGGCCGAC
TTGCCATGATTGCCTTCTTGGCCTTCGTCGTCCAGGCCTCCATCTCCGAC
AAGCCCATCCTCGAGCAGACTTTTGAGTGGGCCAAAAGCTTCGCGTAGAT
GTACATGGCCGACCAGGCCCCTGTCGATGAGGAAATGCGGTCCATCGCCC
TGCCTTTTGCCGCCAAGCCCCAGAACTTGAACGGTGAGCTGGCCGGAGAT
GTGGGCTTTGATCCGTTCAAGTTTACGGACAAGGGTGATGTCGCCAAGTT
CCGTGTGGCGGAGCTCAAGCACGATGAAGTTCCTGACCTTTGCCACTGTC
GTGGGCACGGCCTCGGCCTTCCTGGCCCCTGCCCCCATGCACACCCGCAC
CCAAGGCCGCGTCGTGTGGCTATGTTGGCGGTTGTGGGTGTGTTTGTGCA
GGAGCTGTACCAGTGGAACGACAACTTTCCCTCCAAGAACTTCCTCGAGG
CCCTCAAGACCGCCCCCCCCCTGGGTCTCCTCCAGCTTTTCGTCTTCCTC
GGCGCCTATGACGTAACCACCTCCAAGTTCGATGGCCGCGTCCCGGGTGA
CATTGGCTTTGACCCCCTCCGTTTGTCTGCTGATGGTCTCCGTGAGAACT
GGCAGCTGGCTGAGCTCAAGCATGGCCGACTTGCCATGATTGCCTTCTTG
GCCTTCGTCGTCCAGGCCTCCATCTCCGACAAGCCCATCCTCGAGCAGAC
TTTTGAGTGGGCCAAAAGCTTCGCGTAGATGTACATGGCCGACCAGGCCC
CTGTCGATGAGGAAATGCGGTCCATCGCCCTGCCTTTTGCCGCCAAGCCC
CAGAACTTGAACGGTGAGCTGGCCGGAGATGTGGGCTTTGATCCGTTCAA
GTTTACGGACAAGGGTGATGTCGCCAAGTTCCGTGTGGCGGAGCTCAAGC
ACGATGAAGTTCCTGACCTTTGCCACTGTCGTGGGCACGGCCTCGGCCTT
CCTGGCCCCTGCCCCCATGCACACCCGCACCCAAGGCCGC
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Synonyms
Publications