jgi.p|Nanoce1779_2|578968, mRNA_2077 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578968
Unique Name	mRNA_2077
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2182
Alignment location	scaffold_4:734428..736609 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579054
Track	FilteredModels2
ProteinId	578968

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:734428..736609 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578968	gene_2077	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578968	mRNA_2077-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2077	CDS_2077	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:734428..736609+
coding sequence from alignment at scaffold_4:734428..736609+

mRNA sequence

>mRNA_2077 ID=mRNA_2077|Name=jgi.p|Nanoce1779_2|578968|organism=Nannochloropsis oceanica|type=mRNA|length=2182bp
AGGACGCGCCACCACGACAGTCTGGTGCCAGGGCCGCCTTCGCTCCCCCC
TCTCAGCAAGGTAGACAGGCCTCCCAGGCCCATCGCCTTTCTTCTCATGG
TGGAGAATAGGAGGCCCCGCGGAGCTTTCGAGGGCCTGTCTGCCCCATCA
TTACCCACTACGGTCGTAGCCTTGCTCGCTCTTCTCCAGTTTATAGCCAC
CCCTACTCTCGCTGCGGCTAAGCGTGGGATCCGTTTCACGGGGCGAAAGG
CAAAGGTGCCGGCCAACATGACGGTACGTGCGCGCATCTAGTGGGGCCAG
TAATGTATGTTCATAGTTCAAGCTTTTTCAGCAATCAGAATTGAGAGGGC
CGTGATTTCTTTCCCCCCCCCCCGACTCAAAATATAGAGTCTTTTATTCA
AGTGATGACCTGCACGCACGACACATCTTTCTAACCCCTTGTCGCTGTAG
CAACACAACAATACATTATCTCTTACATCATCCGACGAACACAGGACTAT
ACATGGCACACTCGAGCACACGTCGTTTCCCTATTCCCTTTCTATAACAG
CTCCTCGCCCCTGGCCTATGGCGGCACCTCGGCCAGCTTTCATGGTCAAG
AAGAGTTTCGGTCCGGGGAAGTAGAGGAGATGGTGGCGTTTGCACAGCAA
CAAGGTCTCTTCGCAGTTCCACCTGCATTGGAGGAATGTACCTTCGACAG
TTACTCTGAAGAAAGTGAGCAAGGGGCGGCAGCAGCAGCAGCAGCAGCAT
CACCACCACCTGTGATCTTGTTGGGCGCACGGCGGTTGGACTGTGAGATT
GCGATCGATGGGCCAATGTGCGAGCAGCTGGTGATGGAGGCAGTGGTGTA
CGGCCCTGACGTAGAACCACAAAAATTATGGTATCGTCCCTCTACAGGTA
GCATCTATCATGTCGAGTTGCAGCAGGATAAGCCCTCCCGGCGGCATCAC
GTCACAGTTTCGCGCGATAGCCATCAGCACCTTTCCATCTTGCAGCATAC
ACATTTTGATCCCTCCGACCTATCCGCATCAAGCACAAAGAAGGAGTTCC
CCTCCATATCGTGCCTCTCCTATAATATGTGGCATAACCAACCAGCAGCA
TGGGTGTATCCTGACGCCTCAACGCGCTGGTCCAAGTACTGGGAGAGGCT
AGCGTACCTTGCCTCGATCATTTGGGCGAGCGGTGCGGACGTAGTTGGGC
TGCAGGAAGTTAGATATGATCAGACGTTCGGTCCTGCGGGATATCATTCG
GGATTGAGTCACTTGCTGGACTTGCTGGGGGCCCTAGCTGTTGGTGAGGA
AAATAAGGGAAAAGAAGGCGGGAGTCAGGGGCAGTCGGCGCCTTACCAAT
ATGTGTATCAGCCGGCCATGTCTTTTGCAGGGCACCAAGGCCATGTGTTA
CGGGAGGAGGAAGGGGTTGCCATCCTGAGTCGGTTTCCAGTACGTCGGAC
AGATTATCTTTTGCTGCGGCGGGATTTTTCTGACCCCCAAGACGGGCATC
AACGCATAGTGTTGCATGCGCAAGTGGAGCCTCTGCCAGGGGGTCCATTT
GTGGACGTGTACGTCACGCACTTTTCCTTGAGTTCTCCCGCGCGCGATGC
GGCTGCTGGAAGTATAGTCGCGTGGGCTGCAGAGCAGGGGCATGAGCATG
TGGTGTTGATGGGGGACCTTAATGCTGAGCCTGAGGAGGAGAGTTTGCGG
GTTCTTCATGAAGGAGGGTTCCATGACGCGTGGGATGAGATGCATCCTTT
CGTACCGACGCCGGCCGAGGTGTGCGAGGTAGATAACCAAAATGAGCTAA
AGGAGGAAGAGGGAATAAAGGAAGGTGAGACTTACAAGAGGAGAGAGGGC
CTCGCAGGCGCTACAGAAAAAGATGCCTGCGTAAGGAGTGTGAGAGGAAG
AGAGAAAAAGGTGCAGGAAAGGCTAGCTAAAGCTTCCTTCACCTTTCCTA
CGTGCGACCCTGTAAAGAGAATAGACTACATTTTGTTCCGAAGCAAAAGT
CTTCGGCCCATTGGTGCGCGTTTACATGGGGCGGGGCCTACGGAGGAAAG
CAAGGATTCGGACAGTCCGGGTGGAGGCATGCTTGAACGAAATGGGCCTG
TGTTCGCCTCTGACCACGTTGCTGTCCTTGTCAAATTTGTGCTGATGGGC
ACATAGAAGAAATAAATAAAATTCTATCTAGA

protein sequence of jgi.p|Nanoce1779_2|578968

>mRNA_2077-protein ID=mRNA_2077-protein|Name=jgi.p|Nanoce1779_2|578968|organism=Nannochloropsis oceanica|type=polypeptide|length=509bp
MVAFAQQQGLFAVPPALEECTFDSYSEESEQGAAAAAAAASPPPVILLGA
RRLDCEIAIDGPMCEQLVMEAVVYGPDVEPQKLWYRPSTGSIYHVELQQD
KPSRRHHVTVSRDSHQHLSILQHTHFDPSDLSASSTKKEFPSISCLSYNM
WHNQPAAWVYPDASTRWSKYWERLAYLASIIWASGADVVGLQEVRYDQTF
GPAGYHSGLSHLLDLLGALAVGEENKGKEGGSQGQSAPYQYVYQPAMSFA
GHQGHVLREEEGVAILSRFPVRRTDYLLLRRDFSDPQDGHQRIVLHAQVE
PLPGGPFVDVYVTHFSLSSPARDAAAGSIVAWAAEQGHEHVVLMGDLNAE
PEEESLRVLHEGGFHDAWDEMHPFVPTPAEVCEVDNQNELKEEEGIKEGE
TYKRREGLAGATEKDACVRSVRGREKKVQERLAKASFTFPTCDPVKRIDY
ILFRSKSLRPIGARLHGAGPTEESKDSDSPGGGMLERNGPVFASDHVAVL
VKFVLMGT*

mRNA from alignment at scaffold_4:734428..736609+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2077 ID=mRNA_2077|Name=jgi.p|Nanoce1779_2|578968|organism=Nannochloropsis oceanica|type=mRNA|length=2182bp|location=Sequence derived from alignment at scaffold_4:734428..736609+ (Nannochloropsis oceanica)
AGGACGCGCCACCACGACAGTCTGGTGCCAGGGCCGCCTTCGCTCCCCCC
TCTCAGCAAGGTAGACAGGCCTCCCAGGCCCATCGCCTTTCTTCTCATGG
TGGAGAATAGGAGGCCCCGCGGAGCTTTCGAGGGCCTGTCTGCCCCATCA
TTACCCACTACGGTCGTAGCCTTGCTCGCTCTTCTCCAGTTTATAGCCAC
CCCTACTCTCGCTGCGGCTAAGCGTGGGATCCGTTTCACGGGGCGAAAGG
CAAAGGTGCCGGCCAACATGACGGTACGTGCGCGCATCTAGTGGGGCCAG
TAATGTATGTTCATAGTTCAAGCTTTTTCAGCAATCAGAATTGAGAGGGC
CGTGATTTCTTTCCCCCCCCCCCGACTCAAAATATAGAGTCTTTTATTCA
AGTGATGACCTGCACGCACGACACATCTTTCTAACCCCTTGTCGCTGTAG
CAACACAACAATACATTATCTCTTACATCATCCGACGAACACAGGACTAT
ACATGGCACACTCGAGCACACGTCGTTTCCCTATTCCCTTTCTATAACAG
CTCCTCGCCCCTGGCCTATGGCGGCACCTCGGCCAGCTTTCATGGTCAAG
AAGAGTTTCGGTCCGGGGAAGTAGAGGAGATGGTGGCGTTTGCACAGCAA
CAAGGTCTCTTCGCAGTTCCACCTGCATTGGAGGAATGTACCTTCGACAG
TTACTCTGAAGAAAGTGAGCAAGGGGCGGCAGCAGCAGCAGCAGCAGCAT
CACCACCACCTGTGATCTTGTTGGGCGCACGGCGGTTGGACTGTGAGATT
GCGATCGATGGGCCAATGTGCGAGCAGCTGGTGATGGAGGCAGTGGTGTA
CGGCCCTGACGTAGAACCACAAAAATTATGGTATCGTCCCTCTACAGGTA
GCATCTATCATGTCGAGTTGCAGCAGGATAAGCCCTCCCGGCGGCATCAC
GTCACAGTTTCGCGCGATAGCCATCAGCACCTTTCCATCTTGCAGCATAC
ACATTTTGATCCCTCCGACCTATCCGCATCAAGCACAAAGAAGGAGTTCC
CCTCCATATCGTGCCTCTCCTATAATATGTGGCATAACCAACCAGCAGCA
TGGGTGTATCCTGACGCCTCAACGCGCTGGTCCAAGTACTGGGAGAGGCT
AGCGTACCTTGCCTCGATCATTTGGGCGAGCGGTGCGGACGTAGTTGGGC
TGCAGGAAGTTAGATATGATCAGACGTTCGGTCCTGCGGGATATCATTCG
GGATTGAGTCACTTGCTGGACTTGCTGGGGGCCCTAGCTGTTGGTGAGGA
AAATAAGGGAAAAGAAGGCGGGAGTCAGGGGCAGTCGGCGCCTTACCAAT
ATGTGTATCAGCCGGCCATGTCTTTTGCAGGGCACCAAGGCCATGTGTTA
CGGGAGGAGGAAGGGGTTGCCATCCTGAGTCGGTTTCCAGTACGTCGGAC
AGATTATCTTTTGCTGCGGCGGGATTTTTCTGACCCCCAAGACGGGCATC
AACGCATAGTGTTGCATGCGCAAGTGGAGCCTCTGCCAGGGGGTCCATTT
GTGGACGTGTACGTCACGCACTTTTCCTTGAGTTCTCCCGCGCGCGATGC
GGCTGCTGGAAGTATAGTCGCGTGGGCTGCAGAGCAGGGGCATGAGCATG
TGGTGTTGATGGGGGACCTTAATGCTGAGCCTGAGGAGGAGAGTTTGCGG
GTTCTTCATGAAGGAGGGTTCCATGACGCGTGGGATGAGATGCATCCTTT
CGTACCGACGCCGGCCGAGGTGTGCGAGGTAGATAACCAAAATGAGCTAA
AGGAGGAAGAGGGAATAAAGGAAGGTGAGACTTACAAGAGGAGAGAGGGC
CTCGCAGGCGCTACAGAAAAAGATGCCTGCGTAAGGAGTGTGAGAGGAAG
AGAGAAAAAGGTGCAGGAAAGGCTAGCTAAAGCTTCCTTCACCTTTCCTA
CGTGCGACCCTGTAAAGAGAATAGACTACATTTTGTTCCGAAGCAAAAGT
CTTCGGCCCATTGGTGCGCGTTTACATGGGGCGGGGCCTACGGAGGAAAG
CAAGGATTCGGACAGTCCGGGTGGAGGCATGCTTGAACGAAATGGGCCTG
TGTTCGCCTCTGACCACGTTGCTGTCCTTGTCAAATTTGTGCTGATGGGC
ACATAGAAGAAATAAATAAAATTCTATCTAGA

Coding sequence (CDS) from alignment at scaffold_4:734428..736609+

>mRNA_2077 ID=mRNA_2077|Name=jgi.p|Nanoce1779_2|578968|organism=Nannochloropsis oceanica|type=CDS|length=1527bp|location=Sequence derived from alignment at scaffold_4:734428..736609+ (Nannochloropsis oceanica)
ATGGTGGCGTTTGCACAGCAACAAGGTCTCTTCGCAGTTCCACCTGCATT
GGAGGAATGTACCTTCGACAGTTACTCTGAAGAAAGTGAGCAAGGGGCGG
CAGCAGCAGCAGCAGCAGCATCACCACCACCTGTGATCTTGTTGGGCGCA
CGGCGGTTGGACTGTGAGATTGCGATCGATGGGCCAATGTGCGAGCAGCT
GGTGATGGAGGCAGTGGTGTACGGCCCTGACGTAGAACCACAAAAATTAT
GGTATCGTCCCTCTACAGGTAGCATCTATCATGTCGAGTTGCAGCAGGAT
AAGCCCTCCCGGCGGCATCACGTCACAGTTTCGCGCGATAGCCATCAGCA
CCTTTCCATCTTGCAGCATACACATTTTGATCCCTCCGACCTATCCGCAT
CAAGCACAAAGAAGGAGTTCCCCTCCATATCGTGCCTCTCCTATAATATG
TGGCATAACCAACCAGCAGCATGGGTGTATCCTGACGCCTCAACGCGCTG
GTCCAAGTACTGGGAGAGGCTAGCGTACCTTGCCTCGATCATTTGGGCGA
GCGGTGCGGACGTAGTTGGGCTGCAGGAAGTTAGATATGATCAGACGTTC
GGTCCTGCGGGATATCATTCGGGATTGAGTCACTTGCTGGACTTGCTGGG
GGCCCTAGCTGTTGGTGAGGAAAATAAGGGAAAAGAAGGCGGGAGTCAGG
GGCAGTCGGCGCCTTACCAATATGTGTATCAGCCGGCCATGTCTTTTGCA
GGGCACCAAGGCCATGTGTTACGGGAGGAGGAAGGGGTTGCCATCCTGAG
TCGGTTTCCAGTACGTCGGACAGATTATCTTTTGCTGCGGCGGGATTTTT
CTGACCCCCAAGACGGGCATCAACGCATAGTGTTGCATGCGCAAGTGGAG
CCTCTGCCAGGGGGTCCATTTGTGGACGTGTACGTCACGCACTTTTCCTT
GAGTTCTCCCGCGCGCGATGCGGCTGCTGGAAGTATAGTCGCGTGGGCTG
CAGAGCAGGGGCATGAGCATGTGGTGTTGATGGGGGACCTTAATGCTGAG
CCTGAGGAGGAGAGTTTGCGGGTTCTTCATGAAGGAGGGTTCCATGACGC
GTGGGATGAGATGCATCCTTTCGTACCGACGCCGGCCGAGGTGTGCGAGG
TAGATAACCAAAATGAGCTAAAGGAGGAAGAGGGAATAAAGGAAGGTGAG
ACTTACAAGAGGAGAGAGGGCCTCGCAGGCGCTACAGAAAAAGATGCCTG
CGTAAGGAGTGTGAGAGGAAGAGAGAAAAAGGTGCAGGAAAGGCTAGCTA
AAGCTTCCTTCACCTTTCCTACGTGCGACCCTGTAAAGAGAATAGACTAC
ATTTTGTTCCGAAGCAAAAGTCTTCGGCCCATTGGTGCGCGTTTACATGG
GGCGGGGCCTACGGAGGAAAGCAAGGATTCGGACAGTCCGGGTGGAGGCA
TGCTTGAACGAAATGGGCCTGTGTTCGCCTCTGACCACGTTGCTGTCCTT
GTCAAATTTGTGCTGATGGGCACATAG

Synonyms

Publications